HEADER STRUCTURAL PROTEIN 03-JUN-07 2V26 TITLE MYOSIN VI (MD) PRE-POWERSTROKE STATE (MG.ADP.VO4) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOSIN VI; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DOMAIN MOTOR, RESIDUES 5-377,379-789; COMPND 5 SYNONYM: UNCONVENTIONAL MYOSIN VI; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS CALMODULIN-BINDING, NUCLEOTIDE-BINDING, MYOSIN, MEMBRANE, VANADATE, KEYWDS 2 MYOSIN VI, TRANSPORT, PRE- POWERSTROKE, TRANSITION STATE, PROTEIN KEYWDS 3 TRANSPORT, ACTIN-BINDING, MOTOR PROTEIN, NUCLEAR PROTEIN, KEYWDS 4 ENDOCYTOSIS, ATP-BINDING, COILED COIL, DOMAIN MOTOR, GOLGI KEYWDS 5 APPARATUS, PHOSPHORYLATION, MOLECULAR MOTOR, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.MENETREY,P.LLINAS,M.MUKHERJEA,H.L.SWEENEY,A.HOUDUSSE REVDAT 3 13-DEC-23 2V26 1 LINK REVDAT 2 24-FEB-09 2V26 1 VERSN REVDAT 1 20-NOV-07 2V26 0 JRNL AUTH J.MENETREY,P.LLINAS,M.MUKHERJEA,H.L.SWEENEY,A.HOUDUSSE JRNL TITL THE STRUCTURAL BASIS FOR THE LARGE POWERSTROKE OF MYOSIN VI. JRNL REF CELL(CAMBRIDGE,MASS.) V. 131 300 2007 JRNL REFN ISSN 0092-8674 JRNL PMID 17956731 JRNL DOI 10.1016/J.CELL.2007.08.027 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 81037 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 9071 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5939 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 643 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6023 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 71 REMARK 3 SOLVENT ATOMS : 536 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.20000 REMARK 3 B22 (A**2) : 0.77000 REMARK 3 B33 (A**2) : -0.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.128 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.122 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6252 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8429 ; 1.062 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 760 ; 5.036 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 309 ;35.161 ;24.175 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1126 ;12.493 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;14.632 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 919 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4700 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3011 ; 0.186 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4323 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 461 ; 0.097 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 54 ; 0.145 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.068 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3872 ; 0.517 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6044 ; 0.832 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2669 ; 1.355 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2376 ; 2.113 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2V26 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1290032777. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0080 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 90108 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 70.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2BKH REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3-4% PEG 8000, 50MM MES PH 6.75, 100MM REMARK 280 SAM, 1MM TCEP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 46.75600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.48800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.92250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.48800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.75600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.92250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 34 REMARK 465 ASN A 35 REMARK 465 GLN A 36 REMARK 465 LYS A 37 REMARK 465 THR A 174 REMARK 465 GLY A 175 REMARK 465 GLN A 176 REMARK 465 ASP A 177 REMARK 465 ILE A 178 REMARK 465 ASP A 179 REMARK 465 LEU A 396 REMARK 465 THR A 397 REMARK 465 THR A 398 REMARK 465 ALA A 399 REMARK 465 GLY A 400 REMARK 465 GLY A 401 REMARK 465 ALA A 402 REMARK 465 LYS A 403 REMARK 465 GLY A 404 REMARK 465 THR A 405 REMARK 465 VAL A 406 REMARK 465 GLU A 622 REMARK 465 SER A 623 REMARK 465 SER A 624 REMARK 465 THR A 625 REMARK 465 ASN A 626 REMARK 465 ASN A 627 REMARK 465 ASN A 628 REMARK 465 LYS A 629 REMARK 465 ASP A 630 REMARK 465 THR A 631 REMARK 465 LYS A 632 REMARK 465 GLN A 633 REMARK 465 LYS A 634 REMARK 465 ALA A 635 REMARK 465 GLY A 636 REMARK 465 LYS A 637 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 91 -119.72 52.75 REMARK 500 LYS A 105 -18.21 78.89 REMARK 500 ASN A 244 -176.40 -69.52 REMARK 500 SER A 467 -161.82 -122.29 REMARK 500 LEU A 522 -48.35 69.99 REMARK 500 ASP A 553 -4.66 76.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2036 DISTANCE = 6.33 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1801 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 158 OG1 REMARK 620 2 SER A 204 OG 82.3 REMARK 620 3 ADP A1789 O1B 91.3 172.1 REMARK 620 4 VO4 A1791 O2 170.8 88.6 97.9 REMARK 620 5 HOH A2314 O 84.5 87.6 96.3 94.1 REMARK 620 6 HOH A2527 O 86.5 82.9 92.2 93.4 167.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VO4 A1791 V REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A1789 O2B REMARK 620 2 VO4 A1791 O1 178.6 REMARK 620 3 VO4 A1791 O2 85.4 95.8 REMARK 620 4 VO4 A1791 O3 83.2 95.6 119.1 REMARK 620 5 VO4 A1791 O4 86.3 93.7 119.5 119.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A1789 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VO4 A1791 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1792 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1793 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1794 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1795 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1796 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1797 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1798 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1799 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1800 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BKH RELATED DB: PDB REMARK 900 MYOSIN VI NUCLEOTIDE-FREE (MD) CRYSTAL STRUCTURE REMARK 900 RELATED ID: 2BKI RELATED DB: PDB REMARK 900 MYOSIN VI NUCLEOTIDE-FREE (LONG.S1) CRYSTAL STRUCTURE. REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHORS STATE THAT THE ORIGINAL SEQUENCE (UNIPROT REMARK 999 Q29122) OF MYOSIN VI FROM PIG WAS MOST LIKELY REMARK 999 INCORRECT BECAUSE THE CHANGES THAT ARE IN THEIR CLONE REMARK 999 (LYS DELETION AND THE 6 MUTATIONS) ARE CONSERVED ACROSS REMARK 999 THE MYOSIN VI FAMILY. DBREF 2V26 A 5 377 UNP Q29122 MYO6_PIG 5 377 DBREF 2V26 A 378 788 UNP Q29122 MYO6_PIG 379 789 SEQADV 2V26 VAL A 547 UNP Q29122 GLY 548 CONFLICT SEQADV 2V26 ARG A 572 UNP Q29122 ALA 573 CONFLICT SEQADV 2V26 ASP A 573 UNP Q29122 TYR 574 CONFLICT SEQADV 2V26 LEU A 714 UNP Q29122 VAL 715 CONFLICT SEQADV 2V26 TYR A 721 UNP Q29122 SER 722 CONFLICT SEQADV 2V26 MET A 722 UNP Q29122 LEU 723 CONFLICT SEQRES 1 A 784 LYS PRO VAL TRP ALA PRO HIS PRO THR ASP GLY PHE GLN SEQRES 2 A 784 VAL GLY ASN ILE VAL ASP ILE GLY PRO ASP SER LEU THR SEQRES 3 A 784 ILE GLU PRO LEU ASN GLN LYS GLY LYS THR PHE LEU ALA SEQRES 4 A 784 LEU ILE ASN GLN VAL PHE PRO ALA GLU GLU ASP SER LYS SEQRES 5 A 784 LYS ASP VAL GLU ASP ASN CYS SER LEU MET TYR LEU ASN SEQRES 6 A 784 GLU ALA THR LEU LEU HIS ASN ILE LYS VAL ARG TYR SER SEQRES 7 A 784 LYS ASP ARG ILE TYR THR TYR VAL ALA ASN ILE LEU ILE SEQRES 8 A 784 ALA VAL ASN PRO TYR PHE ASP ILE PRO LYS ILE TYR SER SEQRES 9 A 784 SER GLU THR ILE LYS SER TYR GLN GLY LYS SER LEU GLY SEQRES 10 A 784 THR MET PRO PRO HIS VAL PHE ALA ILE ALA ASP LYS ALA SEQRES 11 A 784 PHE ARG ASP MET LYS VAL LEU LYS LEU SER GLN SER ILE SEQRES 12 A 784 ILE VAL SER GLY GLU SER GLY ALA GLY LYS THR GLU ASN SEQRES 13 A 784 THR LYS PHE VAL LEU ARG TYR LEU THR GLU SER TYR GLY SEQRES 14 A 784 THR GLY GLN ASP ILE ASP ASP ARG ILE VAL GLU ALA ASN SEQRES 15 A 784 PRO LEU LEU GLU ALA PHE GLY ASN ALA LYS THR VAL ARG SEQRES 16 A 784 ASN ASN ASN SER SER ARG PHE GLY LYS PHE VAL GLU ILE SEQRES 17 A 784 HIS PHE ASN GLU LYS SER SER VAL VAL GLY GLY PHE VAL SEQRES 18 A 784 SER HIS TYR LEU LEU GLU LYS SER ARG ILE CYS VAL GLN SEQRES 19 A 784 GLY LYS GLU GLU ARG ASN TYR HIS ILE PHE TYR ARG LEU SEQRES 20 A 784 CYS ALA GLY ALA SER GLU ASP ILE ARG GLU ARG LEU HIS SEQRES 21 A 784 LEU SER SER PRO ASP ASN PHE ARG TYR LEU ASN ARG GLY SEQRES 22 A 784 CYS THR ARG TYR PHE ALA ASN LYS GLU THR ASP LYS GLN SEQRES 23 A 784 ILE LEU GLN ASN ARG LYS SER PRO GLU TYR LEU LYS ALA SEQRES 24 A 784 GLY SER LEU LYS ASP PRO LEU LEU ASP ASP HIS GLY ASP SEQRES 25 A 784 PHE ILE ARG MET CYS THR ALA MET LYS LYS ILE GLY LEU SEQRES 26 A 784 ASP ASP GLU GLU LYS LEU ASP LEU PHE ARG VAL VAL ALA SEQRES 27 A 784 GLY VAL LEU HIS LEU GLY ASN ILE ASP PHE GLU GLU ALA SEQRES 28 A 784 GLY SER THR SER GLY GLY CYS ASN LEU LYS ASN LYS SER SEQRES 29 A 784 THR GLN ALA LEU GLU TYR CYS ALA GLU LEU LEU GLY LEU SEQRES 30 A 784 ASP GLN ASP ASP LEU ARG VAL SER LEU THR THR ARG VAL SEQRES 31 A 784 MET LEU THR THR ALA GLY GLY ALA LYS GLY THR VAL ILE SEQRES 32 A 784 LYS VAL PRO LEU LYS VAL GLU GLN ALA ASN ASN ALA ARG SEQRES 33 A 784 ASP ALA LEU ALA LYS THR VAL TYR SER HIS LEU PHE ASP SEQRES 34 A 784 HIS VAL VAL ASN ARG VAL ASN GLN CYS PHE PRO PHE GLU SEQRES 35 A 784 THR SER SER TYR PHE ILE GLY VAL LEU ASP ILE ALA GLY SEQRES 36 A 784 PHE GLU TYR PHE GLU HIS ASN SER PHE GLU GLN PHE CYS SEQRES 37 A 784 ILE ASN TYR CYS ASN GLU LYS LEU GLN GLN PHE PHE ASN SEQRES 38 A 784 GLU ARG ILE LEU LYS GLU GLU GLN GLU LEU TYR GLN LYS SEQRES 39 A 784 GLU GLY LEU GLY VAL ASN GLU VAL HIS TYR VAL ASP ASN SEQRES 40 A 784 GLN ASP CYS ILE ASP LEU ILE GLU ALA ARG LEU VAL GLY SEQRES 41 A 784 ILE LEU ASP ILE LEU ASP GLU GLU ASN ARG LEU PRO GLN SEQRES 42 A 784 PRO SER ASP GLN HIS PHE THR SER ALA VAL HIS GLN LYS SEQRES 43 A 784 HIS LYS ASP HIS PHE ARG LEU SER ILE PRO ARG LYS SER SEQRES 44 A 784 LYS LEU ALA ILE HIS ARG ASN ILE ARG ASP ASP GLU GLY SEQRES 45 A 784 PHE ILE ILE ARG HIS PHE ALA GLY ALA VAL CYS TYR GLU SEQRES 46 A 784 THR THR GLN PHE VAL GLU LYS ASN ASN ASP ALA LEU HIS SEQRES 47 A 784 MET SER LEU GLU SER LEU ILE CYS GLU SER ARG ASP LYS SEQRES 48 A 784 PHE ILE ARG GLU LEU PHE GLU SER SER THR ASN ASN ASN SEQRES 49 A 784 LYS ASP THR LYS GLN LYS ALA GLY LYS LEU SER PHE ILE SEQRES 50 A 784 SER VAL GLY ASN LYS PHE LYS THR GLN LEU ASN LEU LEU SEQRES 51 A 784 LEU ASP LYS LEU ARG SER THR GLY ALA SER PHE ILE ARG SEQRES 52 A 784 CYS ILE LYS PRO ASN LEU LYS MET THR SER HIS HIS PHE SEQRES 53 A 784 GLU GLY ALA GLN ILE LEU SER GLN LEU GLN CYS SER GLY SEQRES 54 A 784 MET VAL SER VAL LEU ASP LEU MET GLN GLY GLY PHE PRO SEQRES 55 A 784 SER ARG ALA SER PHE HIS GLU LEU TYR ASN MET TYR LYS SEQRES 56 A 784 LYS TYR MET PRO ASP LYS LEU ALA ARG LEU ASP PRO ARG SEQRES 57 A 784 LEU PHE CYS LYS ALA LEU PHE LYS ALA LEU GLY LEU ASN SEQRES 58 A 784 GLU ILE ASP TYR LYS PHE GLY LEU THR LYS VAL PHE PHE SEQRES 59 A 784 ARG PRO GLY LYS PHE ALA GLU PHE ASP GLN ILE MET LYS SEQRES 60 A 784 SER ASP PRO ASP HIS LEU ALA GLU LEU VAL LYS ARG VAL SEQRES 61 A 784 ASN HIS TRP LEU HET ADP A1789 27 HET VO4 A1791 5 HET EDO A1792 4 HET EDO A1793 4 HET EDO A1794 4 HET EDO A1795 4 HET EDO A1796 4 HET EDO A1797 4 HET EDO A1798 4 HET SO4 A1799 5 HET SO4 A1800 5 HET MG A1801 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM VO4 VANADATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 VO4 O4 V 3- FORMUL 4 EDO 7(C2 H6 O2) FORMUL 11 SO4 2(O4 S 2-) FORMUL 13 MG MG 2+ FORMUL 14 HOH *536(H2 O) HELIX 1 1 ASN A 46 VAL A 48 5 3 HELIX 2 2 ASN A 62 LEU A 65 5 4 HELIX 3 3 ASN A 69 LYS A 83 1 15 HELIX 4 4 SER A 108 GLN A 116 1 9 HELIX 5 5 HIS A 126 LYS A 142 1 17 HELIX 6 6 GLY A 156 GLY A 173 1 18 HELIX 7 7 ASP A 180 ALA A 185 1 6 HELIX 8 8 ALA A 185 GLY A 193 1 9 HELIX 9 9 LYS A 232 CYS A 236 5 5 HELIX 10 10 TYR A 245 ALA A 255 1 11 HELIX 11 11 SER A 256 LEU A 263 1 8 HELIX 12 12 SER A 267 ASN A 270 5 4 HELIX 13 13 PHE A 271 ARG A 276 1 6 HELIX 14 14 ASN A 284 LYS A 289 1 6 HELIX 15 15 LEU A 292 LYS A 296 5 5 HELIX 16 16 SER A 297 GLY A 304 1 8 HELIX 17 17 ASP A 312 GLY A 328 1 17 HELIX 18 18 ASP A 330 ASN A 349 1 20 HELIX 19 19 SER A 368 GLY A 380 1 13 HELIX 20 20 ASP A 382 THR A 391 1 10 HELIX 21 21 LYS A 412 GLN A 441 1 30 HELIX 22 22 SER A 467 LEU A 489 1 23 HELIX 23 23 LYS A 490 GLU A 499 1 10 HELIX 24 24 ASN A 511 ALA A 520 1 10 HELIX 25 25 GLY A 524 LEU A 535 1 12 HELIX 26 26 SER A 539 HIS A 551 1 13 HELIX 27 27 ILE A 559 SER A 563 5 5 HELIX 28 28 LEU A 565 ARG A 569 5 5 HELIX 29 29 GLN A 592 ASN A 597 1 6 HELIX 30 30 HIS A 602 GLU A 611 1 10 HELIX 31 31 ASP A 614 PHE A 621 1 8 HELIX 32 32 SER A 642 SER A 660 1 19 HELIX 33 33 GLU A 681 SER A 692 1 12 HELIX 34 34 GLY A 693 GLN A 702 1 10 HELIX 35 35 PHE A 711 LYS A 719 1 9 HELIX 36 36 LYS A 720 MET A 722 5 3 HELIX 37 37 PRO A 723 ARG A 728 1 6 HELIX 38 38 ASP A 730 LEU A 742 1 13 HELIX 39 39 ASN A 745 ILE A 747 5 3 HELIX 40 40 LYS A 762 LYS A 771 1 10 HELIX 41 41 ASP A 773 LEU A 788 1 16 SHEET 1 AA 5 PHE A 41 LEU A 44 0 SHEET 2 AA 5 SER A 28 GLU A 32 -1 O LEU A 29 N ALA A 43 SHEET 3 AA 5 GLY A 15 ILE A 24 -1 O ASN A 20 N GLU A 32 SHEET 4 AA 5 VAL A 7 HIS A 11 -1 O VAL A 7 N GLY A 19 SHEET 5 AA 5 PHE A 49 PRO A 50 -1 O PHE A 49 N TRP A 8 SHEET 1 AB 7 TYR A 87 VAL A 90 0 SHEET 2 AB 7 ILE A 93 VAL A 97 -1 O ILE A 93 N VAL A 90 SHEET 3 AB 7 GLY A 662 ILE A 669 1 O PHE A 665 N LEU A 94 SHEET 4 AB 7 GLN A 145 SER A 150 1 O SER A 146 N SER A 664 SHEET 5 AB 7 TYR A 450 ASP A 456 1 O PHE A 451 N GLN A 145 SHEET 6 AB 7 GLY A 207 PHE A 214 -1 O LYS A 208 N ASP A 456 SHEET 7 AB 7 VAL A 220 TYR A 228 -1 N VAL A 221 O HIS A 213 SHEET 1 AC 2 ASN A 194 ALA A 195 0 SHEET 2 AC 2 SER A 203 SER A 204 -1 O SER A 203 N ALA A 195 SHEET 1 AD 2 PHE A 352 GLU A 354 0 SHEET 2 AD 2 CYS A 362 LEU A 364 -1 O ASN A 363 N GLU A 353 SHEET 1 AE 2 THR A 392 VAL A 394 0 SHEET 2 AE 2 LYS A 408 PRO A 410 -1 O VAL A 409 N ARG A 393 SHEET 1 AF 3 LEU A 557 SER A 558 0 SHEET 2 AF 3 GLY A 576 HIS A 581 -1 O ILE A 578 N SER A 558 SHEET 3 AF 3 GLY A 584 GLU A 589 -1 O GLY A 584 N HIS A 581 SHEET 1 AG 3 SER A 707 SER A 710 0 SHEET 2 AG 3 LYS A 755 PHE A 758 -1 O VAL A 756 N ALA A 709 SHEET 3 AG 3 TYR A 749 PHE A 751 -1 O LYS A 750 N PHE A 757 LINK OG1 THR A 158 MG MG A1801 1555 1555 2.10 LINK OG SER A 204 MG MG A1801 1555 1555 2.22 LINK O2B ADP A1789 V VO4 A1791 1555 1555 2.16 LINK O1B ADP A1789 MG MG A1801 1555 1555 2.06 LINK O2 VO4 A1791 MG MG A1801 1555 1555 1.79 LINK MG MG A1801 O HOH A2314 1555 1555 2.15 LINK MG MG A1801 O HOH A2527 1555 1555 2.16 SITE 1 AC1 23 ASN A 98 PRO A 99 TYR A 100 PHE A 101 SITE 2 AC1 23 ASP A 102 TYR A 107 GLY A 154 ALA A 155 SITE 3 AC1 23 GLY A 156 LYS A 157 THR A 158 GLU A 159 SITE 4 AC1 23 PHE A 163 ASN A 200 LEU A 310 VO4 A1791 SITE 5 AC1 23 MG A1801 HOH A2524 HOH A2525 HOH A2526 SITE 6 AC1 23 HOH A2527 HOH A2528 HOH A2529 SITE 1 AC2 6 THR A 158 SER A 204 ADP A1789 VO4 A1791 SITE 2 AC2 6 HOH A2314 HOH A2527 SITE 1 AC3 13 SER A 153 GLY A 154 LYS A 157 ASN A 200 SITE 2 AC3 13 SER A 203 SER A 204 ALA A 458 GLY A 459 SITE 3 AC3 13 ADP A1789 MG A1801 HOH A2314 HOH A2315 SITE 4 AC3 13 HOH A2527 SITE 1 AC4 5 HIS A 227 TYR A 228 LEU A 229 GLN A 650 SITE 2 AC4 5 HOH A2530 SITE 1 AC5 5 PHE A 206 GLY A 207 ALA A 458 CYS A 476 SITE 2 AC5 5 EDO A1798 SITE 1 AC6 7 GLU A 152 ARG A 199 GLU A 461 TYR A 462 SITE 2 AC6 7 LYS A 670 LEU A 673 HOH A2531 SITE 1 AC7 6 ASP A 84 ARG A 85 ILE A 86 TYR A 87 SITE 2 AC7 6 ILE A 106 HOH A2134 SITE 1 AC8 6 TRP A 8 HIS A 75 LYS A 78 HOH A2017 SITE 2 AC8 6 HOH A2532 HOH A2533 SITE 1 AC9 7 TYR A 462 ASN A 466 LEU A 565 HIS A 568 SITE 2 AC9 7 ALA A 585 VAL A 586 CYS A 587 SITE 1 BC1 8 ARG A 205 PHE A 206 LEU A 229 GLU A 231 SITE 2 BC1 8 ILE A 473 PHE A 647 EDO A1793 HOH A2534 SITE 1 BC2 6 LYS A 83 ARG A 85 SER A 256 GLU A 257 SITE 2 BC2 6 HOH A2535 HOH A2536 SITE 1 BC3 2 ARG A 521 LYS A 782 CRYST1 93.512 93.845 100.976 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010694 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010656 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009903 0.00000