HEADER OXIDOREDUCTASE 03-JUN-07 2V27 TITLE STRUCTURE OF THE COLD ACTIVE PHENYLALANINE HYDROXYLASE FROM COLWELLIA TITLE 2 PSYCHRERYTHRAEA 34H COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHENYLALANINE HYDROXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.14.16.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COLWELLIA PSYCHRERYTHRAEA 34H; SOURCE 3 ORGANISM_TAXID: 167879; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: STAR KEYWDS COLD ADAPTATION, TETRAHYDROBIOPTERIN, COLWELLIA PSYCHRERYTHRAEA, KEYWDS 2 PHENYLALANINE HYDROXYLASE, STABILITY, FLEXIBILITY, ALKAPTONURIA, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.-K.S.LEIROS,A.L.PEY,M.INNSELSET,E.MOE,I.LEIROS,I.H.STEEN,A.MARTINEZ REVDAT 4 13-DEC-23 2V27 1 REMARK LINK REVDAT 3 24-OCT-18 2V27 1 SOURCE REMARK REVDAT 2 24-FEB-09 2V27 1 VERSN REVDAT 1 19-JUN-07 2V27 0 JRNL AUTH H.-K.S.LEIROS,A.L.PEY,M.INNSELSET,E.MOE,I.LEIROS,I.H.STEEN, JRNL AUTH 2 A.MARTINEZ JRNL TITL STRUCTURE OF PHENYLALANINE HYDROXYLASE FROM COLWELLIA JRNL TITL 2 PSYCHRERYTHRAEA 34H, A MONOMERIC COLD ACTIVE ENZYME WITH JRNL TITL 3 LOCAL FLEXIBILITY AROUND THE ACTIVE SITE AND HIGH OVERALL JRNL TITL 4 STABILITY. JRNL REF J.BIOL.CHEM. V. 282 21973 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17537732 JRNL DOI 10.1074/JBC.M610174200 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 89373 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4712 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6297 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 355 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4362 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 768 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.71000 REMARK 3 B22 (A**2) : -0.37000 REMARK 3 B33 (A**2) : -0.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.34000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.069 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.073 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.313 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4620 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6301 ; 1.675 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 580 ; 5.974 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 214 ;30.126 ;24.019 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 769 ;12.740 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;17.792 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 688 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3583 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2539 ; 0.237 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3302 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 592 ; 0.182 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 56 ; 0.173 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 33 ; 0.147 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2884 ; 1.151 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4598 ; 1.770 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1971 ; 2.622 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1703 ; 3.785 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2V27 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1290032781. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94151 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1LTV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6-1.8 M AMMONIUM SULFATE, 100 MM REMARK 280 NACL, 20 MM NAHEPESPH 7.5, PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.01000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 LEU A 1000 REMARK 465 GLU A 1001 REMARK 465 HIS A 1002 REMARK 465 HIS A 1003 REMARK 465 HIS A 1004 REMARK 465 HIS A 1005 REMARK 465 HIS A 1006 REMARK 465 HIS A 1007 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 LYS B 3 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 6 CD REMARK 480 LYS A 10 NZ REMARK 480 VAL A 11 CG1 CG2 REMARK 480 GLU A 14 CA CB CG CD OE2 REMARK 480 HIS A 15 CG CD2 CE1 NE2 REMARK 480 LYS A 40 CG CD CE NZ REMARK 480 LYS A 72 CD CE NZ REMARK 480 LEU A 85 CG CD2 REMARK 480 PHE A 88 CE2 CZ REMARK 480 GLN A 116 CD NE2 REMARK 480 LYS A 152 CD CE REMARK 480 LYS A 175 CD CE NZ REMARK 480 LYS A 229 NZ REMARK 480 GLU A 235 CD REMARK 480 MET A 245 CE REMARK 480 LYS B 6 CD REMARK 480 LYS B 40 CG CD CE REMARK 480 ARG B 60 NE REMARK 480 ASP B 65 OD1 REMARK 480 PRO B 83 CG REMARK 480 ALA B 84 C CB REMARK 480 LEU B 85 CG CD1 CD2 REMARK 480 GLU B 110 CG CD OE1 OE2 REMARK 480 GLN B 116 CD OE1 REMARK 480 GLU B 117 CG CD OE1 OE2 REMARK 480 LYS B 152 CD REMARK 480 LYS B 175 CE NZ REMARK 480 LYS B 203 CE NZ REMARK 480 GLU B 240 OE2 REMARK 480 LEU B 1000 CG CD2 REMARK 480 GLU B 1001 OE1 REMARK 480 HIS B 1004 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2286 O HOH A 2287 1.41 REMARK 500 OE1 GLU B 1001 O HOH B 2350 1.41 REMARK 500 O HOH A 2232 O HOH A 2286 1.74 REMARK 500 O HOH B 2209 O HOH B 2211 1.97 REMARK 500 O HOH B 2291 O HOH B 2339 2.00 REMARK 500 NZ LYS A 10 O HOH A 2011 2.00 REMARK 500 O HOH A 2253 O HOH A 2254 2.04 REMARK 500 CA CYS A 38 O HOH A 2095 2.10 REMARK 500 OE1 GLN A 35 O HOH A 2087 2.12 REMARK 500 CD GLN A 35 O HOH A 2087 2.12 REMARK 500 CG2 THR A 33 O HOH A 2137 2.17 REMARK 500 O HOH A 2305 O HOH A 2309 2.18 REMARK 500 O ALA A 37 O HOH A 2091 2.19 REMARK 500 O HOH A 2326 O HOH A 2330 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 6 CD LYS A 6 CE 1.496 REMARK 500 LYS A 6 CE LYS A 6 NZ 0.240 REMARK 500 GLU A 14 CD GLU A 14 OE1 0.984 REMARK 500 GLU A 14 CA GLU A 14 C 0.402 REMARK 500 HIS A 15 CG HIS A 15 ND1 0.447 REMARK 500 HIS A 15 ND1 HIS A 15 CE1 -0.176 REMARK 500 GLU A 49 CG GLU A 49 CD 0.105 REMARK 500 LEU A 85 CG LEU A 85 CD1 0.731 REMARK 500 PHE A 88 CE1 PHE A 88 CZ 0.121 REMARK 500 GLN A 116 CD GLN A 116 OE1 0.288 REMARK 500 LYS A 152 CE LYS A 152 NZ -0.796 REMARK 500 LYS A 229 CE LYS A 229 NZ -0.200 REMARK 500 GLU A 235 CG GLU A 235 CD 0.100 REMARK 500 GLU A 235 CD GLU A 235 OE1 -0.228 REMARK 500 GLU A 235 CD GLU A 235 OE2 0.478 REMARK 500 LYS B 6 CD LYS B 6 CE 1.530 REMARK 500 LYS B 40 CE LYS B 40 NZ -0.520 REMARK 500 ARG B 60 CD ARG B 60 NE 0.181 REMARK 500 ARG B 60 NE ARG B 60 CZ 0.418 REMARK 500 PRO B 83 CG PRO B 83 CD 0.355 REMARK 500 ALA B 84 CA ALA B 84 CB -0.406 REMARK 500 ALA B 84 CA ALA B 84 C 0.179 REMARK 500 LYS B 152 CD LYS B 152 CE 0.417 REMARK 500 LYS B 175 CD LYS B 175 CE -0.273 REMARK 500 LYS B 203 CD LYS B 203 CE 0.248 REMARK 500 LEU B1000 CG LEU B1000 CD1 0.892 REMARK 500 HIS B1004 CB HIS B1004 CG -0.185 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 6 CD - CE - NZ ANGL. DEV. = -71.5 DEGREES REMARK 500 GLU A 14 CB - CA - C ANGL. DEV. = -15.1 DEGREES REMARK 500 GLU A 14 N - CA - C ANGL. DEV. = 17.0 DEGREES REMARK 500 GLU A 14 CA - C - N ANGL. DEV. = -18.4 DEGREES REMARK 500 HIS A 15 ND1 - CG - CD2 ANGL. DEV. = -31.3 DEGREES REMARK 500 HIS A 15 CB - CG - ND1 ANGL. DEV. = 17.2 DEGREES REMARK 500 HIS A 15 CG - ND1 - CE1 ANGL. DEV. = -13.3 DEGREES REMARK 500 HIS A 15 ND1 - CE1 - NE2 ANGL. DEV. = -28.1 DEGREES REMARK 500 ASP A 45 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 LEU A 85 CD1 - CG - CD2 ANGL. DEV. = -24.8 DEGREES REMARK 500 PHE A 88 CZ - CE2 - CD2 ANGL. DEV. = -9.0 DEGREES REMARK 500 GLN A 116 OE1 - CD - NE2 ANGL. DEV. = -29.0 DEGREES REMARK 500 GLN A 116 CG - CD - OE1 ANGL. DEV. = 17.7 DEGREES REMARK 500 LYS A 152 CD - CE - NZ ANGL. DEV. = -35.0 DEGREES REMARK 500 LYS A 229 CD - CE - NZ ANGL. DEV. = 19.2 DEGREES REMARK 500 LYS B 6 CB - CG - CD ANGL. DEV. = 17.3 DEGREES REMARK 500 LYS B 6 CD - CE - NZ ANGL. DEV. = -75.4 DEGREES REMARK 500 ALA B 84 CB - CA - C ANGL. DEV. = 14.0 DEGREES REMARK 500 GLN B 116 OE1 - CD - NE2 ANGL. DEV. = -28.5 DEGREES REMARK 500 GLN B 116 CG - CD - NE2 ANGL. DEV. = 22.6 DEGREES REMARK 500 LYS B 152 CG - CD - CE ANGL. DEV. = 29.4 DEGREES REMARK 500 LYS B 152 CD - CE - NZ ANGL. DEV. = 19.2 DEGREES REMARK 500 LYS B 175 CG - CD - CE ANGL. DEV. = 22.1 DEGREES REMARK 500 LYS B 175 CD - CE - NZ ANGL. DEV. = 14.7 DEGREES REMARK 500 ARG B 212 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 GLU B 240 OE1 - CD - OE2 ANGL. DEV. = -19.0 DEGREES REMARK 500 GLU B 240 CG - CD - OE2 ANGL. DEV. = 12.6 DEGREES REMARK 500 LEU B1000 CB - CG - CD1 ANGL. DEV. = 12.2 DEGREES REMARK 500 GLU B1001 OE1 - CD - OE2 ANGL. DEV. = -7.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 114 131.64 -170.87 REMARK 500 THR A 165 -80.76 -119.35 REMARK 500 TYR B 7 -54.67 69.89 REMARK 500 TYR B 114 135.79 -170.09 REMARK 500 THR B 165 -83.06 -120.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU A 14 0.10 SIDE CHAIN REMARK 500 HIS A 15 0.30 SIDE CHAIN REMARK 500 ARG B 60 0.14 SIDE CHAIN REMARK 500 GLU B 240 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 14 -19.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2017 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A2022 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A2023 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH B2057 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH B2059 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH B2111 DISTANCE = 7.47 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A1268 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 122 NE2 REMARK 620 2 HIS A 127 NE2 94.7 REMARK 620 3 GLU A 167 OE1 161.3 92.5 REMARK 620 4 GLU A 167 OE2 106.1 94.1 56.1 REMARK 620 5 HOH A2231 O 100.6 90.5 96.6 152.4 REMARK 620 6 HOH A2273 O 94.0 170.6 80.3 86.9 84.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B3008 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 122 NE2 REMARK 620 2 HIS B 127 NE2 97.1 REMARK 620 3 GLU B 167 OE2 103.4 93.6 REMARK 620 4 GLU B 167 OE1 158.8 96.5 59.5 REMARK 620 5 HOH B2201 O 100.7 94.9 153.3 94.3 REMARK 620 6 HOH B2357 O 88.1 172.6 90.3 80.1 79.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A1268 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1269 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B3008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B3009 DBREF 2V27 A 1 267 UNP Q47XN7 Q47XN7_COLP3 1 267 DBREF 2V27 A 1000 1007 PDB 2V27 2V27 1000 1007 DBREF 2V27 B 1 267 UNP Q47XN7 Q47XN7_COLP3 1 267 DBREF 2V27 B 1000 1007 PDB 2V27 2V27 1000 1007 SEQRES 1 A 275 MET ALA LYS GLY THR LYS TYR VAL SER LYS VAL PRO ASP SEQRES 2 A 275 GLU HIS GLY PHE ILE GLU TRP SER THR GLU GLU ASN LEU SEQRES 3 A 275 ILE TRP GLN GLU LEU PHE THR ARG GLN ILE ALA CYS ILE SEQRES 4 A 275 LYS ASP LYS ALA CYS ASP GLU TYR HIS GLU GLY LEU ALA SEQRES 5 A 275 LYS LEU ASN LEU PRO THR ASP ARG ILE PRO GLN LEU ASP SEQRES 6 A 275 GLU VAL SER LYS VAL LEU LYS VAL SER THR GLY TRP GLU SEQRES 7 A 275 CYS TYR PRO VAL PRO ALA LEU ILE GLY PHE GLY GLU PHE SEQRES 8 A 275 PHE ARG LEU LEU SER GLU LYS LYS PHE PRO VAL ALA THR SEQRES 9 A 275 PHE ILE ARG SER ARG GLU GLU MET ASP TYR LEU GLN GLU SEQRES 10 A 275 PRO ASP ILE PHE HIS GLU ILE PHE GLY HIS CYS PRO LEU SEQRES 11 A 275 LEU THR ASN SER SER PHE ALA ASN TYR THR GLU ALA TYR SEQRES 12 A 275 GLY LYS MET GLY LEU ASN ALA THR LYS GLU GLN ARG VAL SEQRES 13 A 275 PHE LEU ALA ARG LEU TYR TRP PHE THR ILE GLU PHE GLY SEQRES 14 A 275 LEU LEU ASP THR PRO LYS GLY LEU ARG ILE TYR GLY GLY SEQRES 15 A 275 GLY VAL LEU SER SER PRO GLY GLU THR ASP TYR ALA MET SEQRES 16 A 275 ASN ASN THR ASP VAL ASP ARG LYS PRO PHE ASP ILE LEU SEQRES 17 A 275 ASP VAL LEU ARG THR PRO TYR ARG ILE ASP ILE MET GLN SEQRES 18 A 275 PRO ILE TYR TYR MET LEU THR LYS VAL SER ASP LEU ASP SEQRES 19 A 275 GLU ILE ARG LYS PHE GLU VAL ASP ASP ILE MET GLU LEU SEQRES 20 A 275 VAL ALA GLN ALA GLU ALA LEU GLY LEU HIS GLU ALA LYS SEQRES 21 A 275 PHE PRO VAL LYS LYS ALA SER LEU GLU HIS HIS HIS HIS SEQRES 22 A 275 HIS HIS SEQRES 1 B 275 MET ALA LYS GLY THR LYS TYR VAL SER LYS VAL PRO ASP SEQRES 2 B 275 GLU HIS GLY PHE ILE GLU TRP SER THR GLU GLU ASN LEU SEQRES 3 B 275 ILE TRP GLN GLU LEU PHE THR ARG GLN ILE ALA CYS ILE SEQRES 4 B 275 LYS ASP LYS ALA CYS ASP GLU TYR HIS GLU GLY LEU ALA SEQRES 5 B 275 LYS LEU ASN LEU PRO THR ASP ARG ILE PRO GLN LEU ASP SEQRES 6 B 275 GLU VAL SER LYS VAL LEU LYS VAL SER THR GLY TRP GLU SEQRES 7 B 275 CYS TYR PRO VAL PRO ALA LEU ILE GLY PHE GLY GLU PHE SEQRES 8 B 275 PHE ARG LEU LEU SER GLU LYS LYS PHE PRO VAL ALA THR SEQRES 9 B 275 PHE ILE ARG SER ARG GLU GLU MET ASP TYR LEU GLN GLU SEQRES 10 B 275 PRO ASP ILE PHE HIS GLU ILE PHE GLY HIS CYS PRO LEU SEQRES 11 B 275 LEU THR ASN SER SER PHE ALA ASN TYR THR GLU ALA TYR SEQRES 12 B 275 GLY LYS MET GLY LEU ASN ALA THR LYS GLU GLN ARG VAL SEQRES 13 B 275 PHE LEU ALA ARG LEU TYR TRP PHE THR ILE GLU PHE GLY SEQRES 14 B 275 LEU LEU ASP THR PRO LYS GLY LEU ARG ILE TYR GLY GLY SEQRES 15 B 275 GLY VAL LEU SER SER PRO GLY GLU THR ASP TYR ALA MET SEQRES 16 B 275 ASN ASN THR ASP VAL ASP ARG LYS PRO PHE ASP ILE LEU SEQRES 17 B 275 ASP VAL LEU ARG THR PRO TYR ARG ILE ASP ILE MET GLN SEQRES 18 B 275 PRO ILE TYR TYR MET LEU THR LYS VAL SER ASP LEU ASP SEQRES 19 B 275 GLU ILE ARG LYS PHE GLU VAL ASP ASP ILE MET GLU LEU SEQRES 20 B 275 VAL ALA GLN ALA GLU ALA LEU GLY LEU HIS GLU ALA LYS SEQRES 21 B 275 PHE PRO VAL LYS LYS ALA SER LEU GLU HIS HIS HIS HIS SEQRES 22 B 275 HIS HIS HET FE A1268 1 HET SO4 A1269 5 HET FE B3008 1 HET SO4 B3009 5 HETNAM FE FE (III) ION HETNAM SO4 SULFATE ION FORMUL 3 FE 2(FE 3+) FORMUL 4 SO4 2(O4 S 2-) FORMUL 7 HOH *768(H2 O) HELIX 1 1 SER A 21 LYS A 40 1 20 HELIX 2 2 CYS A 44 ASN A 55 1 12 HELIX 3 3 GLN A 63 GLY A 76 1 14 HELIX 4 4 GLY A 87 GLU A 97 1 11 HELIX 5 5 ASP A 119 HIS A 127 1 9 HELIX 6 6 CYS A 128 THR A 132 5 5 HELIX 7 7 ASN A 133 LEU A 148 1 16 HELIX 8 8 THR A 151 THR A 165 1 15 HELIX 9 9 GLY A 181 SER A 186 1 6 HELIX 10 10 SER A 187 ASN A 197 1 11 HELIX 11 11 ASP A 206 ARG A 212 1 7 HELIX 12 12 LYS A 229 ASP A 232 5 4 HELIX 13 13 LEU A 233 PHE A 239 1 7 HELIX 14 14 GLU A 240 GLY A 255 1 16 HELIX 15 15 LYS A 260 ALA A 266 1 7 HELIX 16 16 SER B 21 ILE B 39 1 19 HELIX 17 17 CYS B 44 ASN B 55 1 12 HELIX 18 18 GLN B 63 GLY B 76 1 14 HELIX 19 19 GLY B 87 GLU B 97 1 11 HELIX 20 20 SER B 108 MET B 112 5 5 HELIX 21 21 ASP B 119 HIS B 127 1 9 HELIX 22 22 HIS B 127 THR B 132 1 6 HELIX 23 23 ASN B 133 LEU B 148 1 16 HELIX 24 24 THR B 151 THR B 165 1 15 HELIX 25 25 GLY B 181 SER B 186 1 6 HELIX 26 26 SER B 187 ASN B 197 1 11 HELIX 27 27 ASP B 206 ARG B 212 1 7 HELIX 28 28 LYS B 229 SER B 231 5 3 HELIX 29 29 ASP B 232 LYS B 238 1 7 HELIX 30 30 GLU B 240 GLY B 255 1 16 HELIX 31 31 LYS B 260 ALA B 266 1 7 SHEET 1 AA 2 GLU A 78 VAL A 82 0 SHEET 2 AA 2 LYS A 99 ALA A 103 1 O PHE A 100 N TYR A 80 SHEET 1 AB 4 GLY A 176 ILE A 179 0 SHEET 2 AB 4 LEU A 170 THR A 173 -1 O LEU A 171 N ARG A 178 SHEET 3 AB 4 ILE A 223 LEU A 227 1 O TYR A 225 N LEU A 170 SHEET 4 AB 4 ASP A 201 PRO A 204 1 O ASP A 201 N TYR A 224 SHEET 1 BA 2 GLU B 78 VAL B 82 0 SHEET 2 BA 2 LYS B 99 ALA B 103 1 O PHE B 100 N TYR B 80 SHEET 1 BB 4 GLY B 176 ILE B 179 0 SHEET 2 BB 4 LEU B 170 THR B 173 -1 O LEU B 171 N ARG B 178 SHEET 3 BB 4 ILE B 223 LEU B 227 1 O TYR B 225 N LEU B 170 SHEET 4 BB 4 ASP B 201 PRO B 204 1 O ASP B 201 N TYR B 224 LINK NE2 HIS A 122 FE FE A1268 1555 1555 2.10 LINK NE2 HIS A 127 FE FE A1268 1555 1555 2.06 LINK OE1 GLU A 167 FE FE A1268 1555 1555 2.25 LINK OE2 GLU A 167 FE FE A1268 1555 1555 2.36 LINK FE FE A1268 O HOH A2231 1555 1555 2.17 LINK FE FE A1268 O HOH A2273 1555 1555 2.12 LINK NE2 HIS B 122 FE FE B3008 1555 1555 2.03 LINK NE2 HIS B 127 FE FE B3008 1555 1555 2.15 LINK OE2 GLU B 167 FE FE B3008 1555 1555 2.29 LINK OE1 GLU B 167 FE FE B3008 1555 1555 2.11 LINK O HOH B2201 FE FE B3008 1555 1555 2.09 LINK O HOH B2357 FE FE B3008 1555 1555 2.26 SITE 1 AC1 5 HIS A 122 HIS A 127 GLU A 167 HOH A2231 SITE 2 AC1 5 HOH A2273 SITE 1 AC2 5 ARG A 212 HIS A 257 GLU A 258 HOH A2408 SITE 2 AC2 5 HOH A2409 SITE 1 AC3 5 HIS B 122 HIS B 127 GLU B 167 HOH B2201 SITE 2 AC3 5 HOH B2357 SITE 1 AC4 5 TYR B 80 ARG B 93 LYS B 99 HOH B2358 SITE 2 AC4 5 HOH B2359 CRYST1 40.280 86.020 87.570 90.00 97.01 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024826 0.000000 0.003053 0.00000 SCALE2 0.000000 0.011625 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011505 0.00000