HEADER OXIDOREDUCTASE 04-JUN-07 2V28 TITLE APO STRUCTURE OF THE COLD ACTIVE PHENYLALANINE HYDROXYLASE FROM TITLE 2 COLWELLIA PSYCHRERYTHRAEA 34H COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHENYLALANINE-4-HYDROXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PHENYLALANINE HYDROXYLASE; COMPND 5 EC: 1.14.16.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COLWELLIA PSYCHRERYTHRAEA 34H; SOURCE 3 ORGANISM_TAXID: 167879; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: STAR KEYWDS COLD ADAPTATION, TETRAHYDROBIOPTERIN, COLWELLIA PSYCHRERYTHRAEA, KEYWDS 2 PHENYLALANINE HYDROXYLASE, STABILITY, FLEXIBILITY, ALKAPTONURIA, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.-K.S.LEIROS,A.L.PEY,M.INNSELSET,E.MOE,I.LEIROS,I.H.STEEN,A.MARTINEZ REVDAT 4 08-MAY-24 2V28 1 REMARK REVDAT 3 24-OCT-18 2V28 1 SOURCE REMARK REVDAT 2 24-FEB-09 2V28 1 VERSN REVDAT 1 19-JUN-07 2V28 0 JRNL AUTH H.-K.S.LEIROS,A.L.PEY,M.INNSELSET,E.MOE,I.LEIROS,I.H.STEEN, JRNL AUTH 2 A.MARTINEZ JRNL TITL STRUCTURE OF PHENYLALANINE HYDROXYLASE FROM COLWELLIA JRNL TITL 2 PSYCHRERYTHRAEA 34H, A MONOMERIC COLD ACTIVE ENZYME WITH JRNL TITL 3 LOCAL FLEXIBILITY AROUND THE ACTIVE SITE AND HIGH OVERALL JRNL TITL 4 STABILITY. JRNL REF J.BIOL.CHEM. V. 282 21973 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17537732 JRNL DOI 10.1074/JBC.M610174200 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 40310 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2173 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2917 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.3640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4264 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 629 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.89000 REMARK 3 B22 (A**2) : -1.20000 REMARK 3 B33 (A**2) : 0.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.58000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.196 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.187 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.150 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.270 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.886 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4460 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6075 ; 1.337 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 555 ; 5.855 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 207 ;32.083 ;24.155 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 746 ;14.645 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;20.638 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 664 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3444 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2455 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3138 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 600 ; 0.181 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 63 ; 0.161 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 30 ; 0.157 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2793 ; 0.690 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4425 ; 1.145 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1906 ; 1.728 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1650 ; 2.558 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2V28 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1290032782. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42547 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6-1.8 M AMMONIUM SULFATE 100 MM NACL REMARK 280 20 MM NAHEPES PH 7.5, PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.14500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 LYS B 3 REMARK 465 GLY B 4 REMARK 465 THR B 5 REMARK 465 LYS B 6 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 6 CD REMARK 480 LYS A 10 NZ REMARK 480 VAL A 11 CG1 CG2 REMARK 480 GLU A 14 CA CB CG CD OE2 REMARK 480 HIS A 15 CG CD2 CE1 NE2 REMARK 480 LYS A 40 CG CD CE NZ REMARK 480 LYS A 72 CD CE NZ REMARK 480 LEU A 85 CG CD2 REMARK 480 PHE A 88 CE2 CZ REMARK 480 GLN A 116 CD NE2 REMARK 480 LYS A 152 CD CE REMARK 480 LYS A 175 CE NZ REMARK 480 LYS A 229 NZ REMARK 480 MET A 245 CE REMARK 480 LYS B 40 CG CD CE REMARK 480 ARG B 60 NE REMARK 480 ASP B 65 OD1 REMARK 480 PRO B 83 CG REMARK 480 ALA B 84 C CB REMARK 480 LEU B 85 CG CD1 CD2 REMARK 480 GLU B 110 CG CD OE1 OE2 REMARK 480 GLN B 116 CD OE1 REMARK 480 GLU B 117 CG CD OE1 OE2 REMARK 480 LYS B 152 CD REMARK 480 LYS B 175 CE NZ REMARK 480 LYS B 203 CE NZ REMARK 480 GLU B 240 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 10 O HOH A 2010 1.85 REMARK 500 OD2 ASP B 201 NZ LYS B 260 2.06 REMARK 500 N ASP B 41 O HOH B 2048 2.15 REMARK 500 O HOH B 2188 O HOH B 2196 2.17 REMARK 500 O HOH A 2353 O HOH A 2355 2.17 REMARK 500 O HOH A 2219 O HOH A 2225 2.18 REMARK 500 O HOH A 2212 O HOH A 2216 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 6 CG LYS A 6 CD 0.379 REMARK 500 LYS A 6 CD LYS A 6 CE 1.973 REMARK 500 LYS A 6 CE LYS A 6 NZ 0.285 REMARK 500 VAL A 11 CB VAL A 11 CG1 0.326 REMARK 500 VAL A 11 CB VAL A 11 CG2 -0.587 REMARK 500 LYS A 40 CB LYS A 40 CG 0.497 REMARK 500 LEU A 85 CA LEU A 85 CB 0.146 REMARK 500 GLN A 116 CG GLN A 116 CD 0.378 REMARK 500 GLN A 116 CD GLN A 116 OE1 0.497 REMARK 500 LYS A 152 CE LYS A 152 NZ -1.069 REMARK 500 LYS A 229 CE LYS A 229 NZ 0.473 REMARK 500 LYS B 40 CE LYS B 40 NZ -0.473 REMARK 500 ARG B 60 CD ARG B 60 NE 0.632 REMARK 500 ARG B 60 NE ARG B 60 CZ 0.166 REMARK 500 ASP B 65 CG ASP B 65 OD1 0.208 REMARK 500 ALA B 84 CA ALA B 84 C 0.625 REMARK 500 ALA B 84 C ALA B 84 O 0.547 REMARK 500 ALA B 84 C LEU B 85 N 0.308 REMARK 500 LEU B 85 CB LEU B 85 CG 0.562 REMARK 500 GLN B 116 CG GLN B 116 CD 0.169 REMARK 500 LYS B 152 CG LYS B 152 CD 0.318 REMARK 500 LYS B 152 CD LYS B 152 CE 0.366 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 6 CD - CE - NZ ANGL. DEV. = -86.0 DEGREES REMARK 500 VAL A 11 CG1 - CB - CG2 ANGL. DEV. = 14.3 DEGREES REMARK 500 VAL A 11 CA - CB - CG1 ANGL. DEV. = -10.4 DEGREES REMARK 500 VAL A 11 CA - CB - CG2 ANGL. DEV. = 23.4 DEGREES REMARK 500 GLU A 14 C - N - CA ANGL. DEV. = -32.5 DEGREES REMARK 500 LEU A 85 CA - CB - CG ANGL. DEV. = 19.7 DEGREES REMARK 500 GLN A 116 CB - CG - CD ANGL. DEV. = -18.1 DEGREES REMARK 500 GLN A 116 OE1 - CD - NE2 ANGL. DEV. = -25.8 DEGREES REMARK 500 GLN A 116 CG - CD - OE1 ANGL. DEV. = 19.6 DEGREES REMARK 500 LYS A 152 CD - CE - NZ ANGL. DEV. = -23.2 DEGREES REMARK 500 LYS A 229 CD - CE - NZ ANGL. DEV. = -23.3 DEGREES REMARK 500 LYS B 40 CA - CB - CG ANGL. DEV. = 18.4 DEGREES REMARK 500 LYS B 40 CD - CE - NZ ANGL. DEV. = -45.6 DEGREES REMARK 500 ARG B 60 CG - CD - NE ANGL. DEV. = -28.6 DEGREES REMARK 500 ARG B 60 NE - CZ - NH1 ANGL. DEV. = 10.8 DEGREES REMARK 500 ARG B 60 NE - CZ - NH2 ANGL. DEV. = -12.0 DEGREES REMARK 500 ASP B 65 CB - CG - OD1 ANGL. DEV. = -6.1 DEGREES REMARK 500 ALA B 84 CB - CA - C ANGL. DEV. = -26.0 DEGREES REMARK 500 ALA B 84 N - CA - CB ANGL. DEV. = -14.2 DEGREES REMARK 500 ALA B 84 N - CA - C ANGL. DEV. = -21.0 DEGREES REMARK 500 ALA B 84 CA - C - O ANGL. DEV. = -17.6 DEGREES REMARK 500 ALA B 84 O - C - N ANGL. DEV. = 13.3 DEGREES REMARK 500 LEU B 85 C - N - CA ANGL. DEV. = -23.2 DEGREES REMARK 500 LEU B 85 CA - CB - CG ANGL. DEV. = -30.4 DEGREES REMARK 500 LEU B 85 CB - CG - CD2 ANGL. DEV. = 17.8 DEGREES REMARK 500 GLN B 116 CB - CG - CD ANGL. DEV. = -17.6 DEGREES REMARK 500 GLN B 116 OE1 - CD - NE2 ANGL. DEV. = -24.8 DEGREES REMARK 500 GLN B 116 CG - CD - NE2 ANGL. DEV. = 31.8 DEGREES REMARK 500 LYS B 152 CB - CG - CD ANGL. DEV. = -16.4 DEGREES REMARK 500 LYS B 152 CG - CD - CE ANGL. DEV. = 40.0 DEGREES REMARK 500 LYS B 152 CD - CE - NZ ANGL. DEV. = -27.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 55 55.40 39.21 REMARK 500 TYR A 114 141.78 -173.65 REMARK 500 THR A 165 -84.88 -123.28 REMARK 500 LEU B 85 115.46 22.12 REMARK 500 THR B 104 55.76 -94.83 REMARK 500 THR B 165 -78.82 -118.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA B 84 LEU B 85 124.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASP B 65 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA B 84 20.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2016 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A2147 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH B2002 DISTANCE = 7.26 ANGSTROMS REMARK 525 HOH B2021 DISTANCE = 5.99 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1268 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1268 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2V27 RELATED DB: PDB REMARK 900 STRUCTURE OF THE COLD ACTIVE PHENYLALANINE HYDROXYLASE FROM REMARK 900 COLWELLIA PSYCHRERYTHRAEA 34H DBREF 2V28 A 1 267 UNP Q47XN7 Q47XN7_COLP3 1 267 DBREF 2V28 B 1 267 UNP Q47XN7 Q47XN7_COLP3 1 267 SEQRES 1 A 267 MET ALA LYS GLY THR LYS TYR VAL SER LYS VAL PRO ASP SEQRES 2 A 267 GLU HIS GLY PHE ILE GLU TRP SER THR GLU GLU ASN LEU SEQRES 3 A 267 ILE TRP GLN GLU LEU PHE THR ARG GLN ILE ALA CYS ILE SEQRES 4 A 267 LYS ASP LYS ALA CYS ASP GLU TYR HIS GLU GLY LEU ALA SEQRES 5 A 267 LYS LEU ASN LEU PRO THR ASP ARG ILE PRO GLN LEU ASP SEQRES 6 A 267 GLU VAL SER LYS VAL LEU LYS VAL SER THR GLY TRP GLU SEQRES 7 A 267 CYS TYR PRO VAL PRO ALA LEU ILE GLY PHE GLY GLU PHE SEQRES 8 A 267 PHE ARG LEU LEU SER GLU LYS LYS PHE PRO VAL ALA THR SEQRES 9 A 267 PHE ILE ARG SER ARG GLU GLU MET ASP TYR LEU GLN GLU SEQRES 10 A 267 PRO ASP ILE PHE HIS GLU ILE PHE GLY HIS CYS PRO LEU SEQRES 11 A 267 LEU THR ASN SER SER PHE ALA ASN TYR THR GLU ALA TYR SEQRES 12 A 267 GLY LYS MET GLY LEU ASN ALA THR LYS GLU GLN ARG VAL SEQRES 13 A 267 PHE LEU ALA ARG LEU TYR TRP PHE THR ILE GLU PHE GLY SEQRES 14 A 267 LEU LEU ASP THR PRO LYS GLY LEU ARG ILE TYR GLY GLY SEQRES 15 A 267 GLY VAL LEU SER SER PRO GLY GLU THR ASP TYR ALA MET SEQRES 16 A 267 ASN ASN THR ASP VAL ASP ARG LYS PRO PHE ASP ILE LEU SEQRES 17 A 267 ASP VAL LEU ARG THR PRO TYR ARG ILE ASP ILE MET GLN SEQRES 18 A 267 PRO ILE TYR TYR MET LEU THR LYS VAL SER ASP LEU ASP SEQRES 19 A 267 GLU ILE ARG LYS PHE GLU VAL ASP ASP ILE MET GLU LEU SEQRES 20 A 267 VAL ALA GLN ALA GLU ALA LEU GLY LEU HIS GLU ALA LYS SEQRES 21 A 267 PHE PRO VAL LYS LYS ALA SER SEQRES 1 B 267 MET ALA LYS GLY THR LYS TYR VAL SER LYS VAL PRO ASP SEQRES 2 B 267 GLU HIS GLY PHE ILE GLU TRP SER THR GLU GLU ASN LEU SEQRES 3 B 267 ILE TRP GLN GLU LEU PHE THR ARG GLN ILE ALA CYS ILE SEQRES 4 B 267 LYS ASP LYS ALA CYS ASP GLU TYR HIS GLU GLY LEU ALA SEQRES 5 B 267 LYS LEU ASN LEU PRO THR ASP ARG ILE PRO GLN LEU ASP SEQRES 6 B 267 GLU VAL SER LYS VAL LEU LYS VAL SER THR GLY TRP GLU SEQRES 7 B 267 CYS TYR PRO VAL PRO ALA LEU ILE GLY PHE GLY GLU PHE SEQRES 8 B 267 PHE ARG LEU LEU SER GLU LYS LYS PHE PRO VAL ALA THR SEQRES 9 B 267 PHE ILE ARG SER ARG GLU GLU MET ASP TYR LEU GLN GLU SEQRES 10 B 267 PRO ASP ILE PHE HIS GLU ILE PHE GLY HIS CYS PRO LEU SEQRES 11 B 267 LEU THR ASN SER SER PHE ALA ASN TYR THR GLU ALA TYR SEQRES 12 B 267 GLY LYS MET GLY LEU ASN ALA THR LYS GLU GLN ARG VAL SEQRES 13 B 267 PHE LEU ALA ARG LEU TYR TRP PHE THR ILE GLU PHE GLY SEQRES 14 B 267 LEU LEU ASP THR PRO LYS GLY LEU ARG ILE TYR GLY GLY SEQRES 15 B 267 GLY VAL LEU SER SER PRO GLY GLU THR ASP TYR ALA MET SEQRES 16 B 267 ASN ASN THR ASP VAL ASP ARG LYS PRO PHE ASP ILE LEU SEQRES 17 B 267 ASP VAL LEU ARG THR PRO TYR ARG ILE ASP ILE MET GLN SEQRES 18 B 267 PRO ILE TYR TYR MET LEU THR LYS VAL SER ASP LEU ASP SEQRES 19 B 267 GLU ILE ARG LYS PHE GLU VAL ASP ASP ILE MET GLU LEU SEQRES 20 B 267 VAL ALA GLN ALA GLU ALA LEU GLY LEU HIS GLU ALA LYS SEQRES 21 B 267 PHE PRO VAL LYS LYS ALA SER HET SO4 A1268 5 HET SO4 B1268 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *629(H2 O) HELIX 1 1 GLU A 23 PHE A 32 1 10 HELIX 2 2 CYS A 44 ASN A 55 1 12 HELIX 3 3 GLN A 63 LYS A 69 1 7 HELIX 4 4 GLY A 87 GLU A 97 1 11 HELIX 5 5 ASP A 119 HIS A 127 1 9 HELIX 6 6 CYS A 128 ASN A 133 5 6 HELIX 7 7 SER A 135 GLY A 147 1 13 HELIX 8 8 THR A 151 THR A 165 1 15 HELIX 9 9 SER A 187 ASN A 197 1 11 HELIX 10 10 ASP A 206 ARG A 212 1 7 HELIX 11 11 LYS A 229 ILE A 236 5 8 HELIX 12 12 GLU A 240 MET A 245 1 6 HELIX 13 13 LYS A 260 ALA A 266 1 7 HELIX 14 14 SER B 21 ILE B 39 1 19 HELIX 15 15 CYS B 44 ASN B 55 1 12 HELIX 16 16 GLN B 63 GLY B 76 1 14 HELIX 17 17 GLY B 87 LEU B 94 1 8 HELIX 18 18 ASP B 119 HIS B 127 1 9 HELIX 19 19 CYS B 128 ASN B 133 5 6 HELIX 20 20 SER B 135 LEU B 148 1 14 HELIX 21 21 THR B 151 THR B 165 1 15 HELIX 22 22 GLY B 181 SER B 186 1 6 HELIX 23 23 SER B 187 ASN B 197 1 11 HELIX 24 24 ASP B 206 ARG B 212 1 7 HELIX 25 25 LYS B 229 SER B 231 5 3 HELIX 26 26 ASP B 232 PHE B 239 1 8 HELIX 27 27 GLU B 240 GLY B 255 1 16 HELIX 28 28 LYS B 260 ALA B 266 1 7 SHEET 1 AA 2 TYR A 80 VAL A 82 0 SHEET 2 AA 2 PRO A 101 ALA A 103 1 O VAL A 102 N VAL A 82 SHEET 1 AB 4 GLY A 176 ILE A 179 0 SHEET 2 AB 4 LEU A 170 THR A 173 -1 O LEU A 171 N ARG A 178 SHEET 3 AB 4 TYR A 224 LEU A 227 1 O TYR A 225 N LEU A 170 SHEET 4 AB 4 ARG A 202 PRO A 204 1 O LYS A 203 N MET A 226 SHEET 1 BA 2 GLU B 78 VAL B 82 0 SHEET 2 BA 2 LYS B 99 ALA B 103 1 O PHE B 100 N TYR B 80 SHEET 1 BB 4 GLY B 176 ILE B 179 0 SHEET 2 BB 4 LEU B 170 THR B 173 -1 N LEU B 171 O ARG B 178 SHEET 3 BB 4 TYR B 225 LEU B 227 1 O TYR B 225 N LEU B 170 SHEET 4 BB 4 LYS B 203 PRO B 204 1 O LYS B 203 N MET B 226 SITE 1 AC1 6 ARG A 212 HIS A 257 GLU A 258 HOH A2291 SITE 2 AC1 6 HOH A2364 HOH A2365 SITE 1 AC2 5 TYR B 80 ARG B 93 LYS B 99 HOH B2263 SITE 2 AC2 5 HOH B2264 CRYST1 40.430 86.290 87.670 90.00 96.64 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024734 0.000000 0.002879 0.00000 SCALE2 0.000000 0.011589 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011483 0.00000