HEADER TRANSFERASE 05-JUN-07 2V2F TITLE CRYSTAL STRUCTURE OF PBP1A FROM DRUG-RESISTANT STRAIN 5204 FROM TITLE 2 STREPTOCOCCUS PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENICILLIN BINDING PROTEIN 1A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GLYCOSYLTRASFERASE DOMAIN, RESIDUES 47-70; COMPND 5 EC: 2.4.1.129; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PENICILLIN BINDING PROTEIN 1A; COMPND 9 CHAIN: F; COMPND 10 FRAGMENT: TRANSPEPTIDASE DOMAIN, GLYCOSYLTRASFERASE DOMAIN, RESIDUES COMPND 11 264-653; COMPND 12 EC: 3.4.16.4; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 1313; SOURCE 4 STRAIN: 5204; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: MC1061; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 10 ORGANISM_TAXID: 1313; SOURCE 11 STRAIN: 5204; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: MC1061 KEYWDS TRANSPEPTIDASE ACTIVITY, PEPTIDOGLYCAN SYNTHESIS, TRANSFERASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR V.JOB,R.CARAPITO,T.VERNET,O.DIDEBERG,A.DESSEN,A.ZAPUN REVDAT 4 13-DEC-23 2V2F 1 LINK REVDAT 3 24-FEB-09 2V2F 1 VERSN REVDAT 2 26-FEB-08 2V2F 1 JRNL REVDAT 1 25-DEC-07 2V2F 0 JRNL AUTH V.JOB,R.CARAPITO,T.VERNET,A.DESSEN,A.ZAPUN JRNL TITL COMMON ALTERATIONS IN PBP1A FROM RESISTANT STREPTOCOCCUS JRNL TITL 2 PNEUMONIAE DECREASE ITS REACTIVITY TOWARD {BETA}-LACTAMS: JRNL TITL 3 STRUCTURAL INSIGHTS. JRNL REF J.BIOL.CHEM. V. 283 4886 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18055459 JRNL DOI 10.1074/JBC.M706181200 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 27167 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3026 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1931 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 245 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2985 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 203 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.27000 REMARK 3 B22 (A**2) : 0.42000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.42000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.195 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.166 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.911 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.876 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3065 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4165 ; 1.465 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 376 ; 1.958 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 144 ;36.504 ;24.722 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 475 ;10.650 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;15.711 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 448 ; 0.161 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2364 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1550 ; 0.236 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2187 ; 0.321 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 218 ; 0.136 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 38 ; 0.225 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.153 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1886 ; 1.238 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3026 ; 1.943 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1179 ; 2.058 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1139 ; 2.843 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2V2F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1290032790. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 287 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29802 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 19.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 3.770 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.86 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2CW6 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH6, 21% PEG6000, 17MM BACL2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.48000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.51500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.48000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.51500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 1530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 47 REMARK 465 VAL A 48 REMARK 465 ALA A 49 REMARK 465 THR A 50 REMARK 465 THR A 51 REMARK 465 SER A 68 REMARK 465 GLU A 69 REMARK 465 ARG A 70 REMARK 465 SER F 264 REMARK 465 ALA F 265 REMARK 465 SER F 266 REMARK 465 ASN F 267 REMARK 465 GLN F 350 REMARK 465 ALA F 351 REMARK 465 SER F 352 REMARK 465 ASN F 353 REMARK 465 VAL F 354 REMARK 465 ASP F 566 REMARK 465 GLU F 567 REMARK 465 ILE F 568 REMARK 465 GLU F 569 REMARK 465 LYS F 570 REMARK 465 HIS F 571 REMARK 465 ILE F 572 REMARK 465 LYS F 573 REMARK 465 ASN F 574 REMARK 465 THR F 575 REMARK 465 GLY F 576 REMARK 465 ASN F 630 REMARK 465 ALA F 652 REMARK 465 ARG F 653 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY A 67 CA C O REMARK 470 LYS F 512 CG CD CE NZ REMARK 470 ASP F 565 CB CG OD1 OD2 REMARK 470 GLU F 632 CG CD OE1 OE2 REMARK 470 GLU F 645 CG CD OE1 OE2 REMARK 470 GLY F 651 CA C O REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 TYR F 591 OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP F 317 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 57 -167.90 -78.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA F1652 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR F 364 OG1 REMARK 620 2 THR F 364 O 63.8 REMARK 620 3 SER F 472 OG 149.7 132.3 REMARK 620 4 ASN F 473 O 82.3 145.4 81.0 REMARK 620 5 TYR F 476 O 67.3 96.0 84.1 75.9 REMARK 620 6 HOH F2059 O 67.8 72.8 136.5 88.7 134.0 REMARK 620 7 HOH F2119 O 111.3 65.5 68.5 139.7 75.4 131.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA F1652 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES F1653 DBREF 2V2F A 47 70 UNP Q9RET4 Q9RET4_STRPN 47 70 DBREF 2V2F F 264 653 UNP Q9RET4 Q9RET4_STRPN 264 653 SEQRES 1 A 24 LEU VAL ALA THR THR SER SER LYS ILE TYR ASP ASN LYS SEQRES 2 A 24 ASN GLN LEU ILE ALA ASP LEU GLY SER GLU ARG SEQRES 1 F 390 SER ALA SER ASN TYR PRO ALA TYR MET ASP ASN TYR LEU SEQRES 2 F 390 LYS GLU VAL ILE ASN GLN VAL GLU GLN GLU THR GLY TYR SEQRES 3 F 390 ASN LEU LEU THR THR GLY MET ASP VAL TYR THR ASN VAL SEQRES 4 F 390 ASP GLN GLU ALA GLN LYS HIS LEU TRP ASP ILE TYR ASN SEQRES 5 F 390 SER ASP GLN TYR VAL SER TYR PRO ASP ASP ASP LEU GLN SEQRES 6 F 390 VAL ALA SER THR VAL VAL ASP VAL SER ASN GLY LYS VAL SEQRES 7 F 390 ILE ALA GLN LEU GLY ALA ARG HIS GLN ALA SER ASN VAL SEQRES 8 F 390 SER PHE GLY THR ASN GLN ALA VAL GLU THR ASN ARG ASP SEQRES 9 F 390 TRP GLY SER ALA MET LYS PRO ILE THR ASP TYR ALA PRO SEQRES 10 F 390 ALA ILE GLU TYR GLY VAL TYR ASP SER THR ALA THR MET SEQRES 11 F 390 VAL ASN ASP ILE PRO TYR ASN TYR PRO GLY THR SER THR SEQRES 12 F 390 PRO VAL TYR ASN TRP ASP ARG ALA TYR PHE GLY ASN ILE SEQRES 13 F 390 THR LEU GLN TYR ALA LEU GLN GLN SER ARG ASN VAL THR SEQRES 14 F 390 ALA VAL GLU THR LEU ASN LYS VAL GLY LEU ASP ARG ALA SEQRES 15 F 390 LYS THR PHE LEU ASN GLY LEU GLY ILE ASP TYR PRO SER SEQRES 16 F 390 MET HIS TYR ALA ASN ALA ILE SER SER ASN THR THR GLU SEQRES 17 F 390 SER ASN LYS GLN TYR GLY ALA SER SER GLU LYS MET ALA SEQRES 18 F 390 ALA ALA TYR ALA ALA PHE ALA ASN GLY GLY ILE TYR HIS SEQRES 19 F 390 LYS PRO MET TYR ILE ASN LYS VAL VAL PHE SER ASP GLY SEQRES 20 F 390 SER LYS LYS GLU PHE SER ASP VAL GLY THR ARG ALA MET SEQRES 21 F 390 LYS GLU THR THR ALA TYR MET MET THR GLU MET MET LYS SEQRES 22 F 390 THR VAL LEU ALA TYR GLY THR GLY ARG GLY ALA TYR LEU SEQRES 23 F 390 PRO TRP LEU ALA GLN ALA GLY LYS THR GLY THR SER ASN SEQRES 24 F 390 TYR THR ASP ASP GLU ILE GLU LYS HIS ILE LYS ASN THR SEQRES 25 F 390 GLY TYR VAL ALA PRO ASP GLU MET PHE VAL GLY TYR THR SEQRES 26 F 390 ARG LYS TYR SER MET ALA VAL TRP THR GLY TYR SER ASN SEQRES 27 F 390 ARG LEU THR PRO ILE VAL GLY ASP GLY PHE LEU VAL ALA SEQRES 28 F 390 ALA LYS VAL TYR ARG SER MET ILE THR TYR LEU SER GLU SEQRES 29 F 390 GLY SER ASN PRO GLU ASP TRP ASN ILE PRO GLU GLY LEU SEQRES 30 F 390 TYR ARG ASN GLY GLU PHE VAL PHE LYS ASN GLY ALA ARG HET BA F1652 1 HET MES F1653 12 HETNAM BA BARIUM ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 3 BA BA 2+ FORMUL 4 MES C6 H13 N O4 S FORMUL 5 HOH *203(H2 O) HELIX 1 1 PRO F 269 TYR F 271 5 3 HELIX 2 2 MET F 272 GLY F 288 1 17 HELIX 3 3 ASP F 303 SER F 316 1 14 HELIX 4 4 TRP F 368 ALA F 371 5 4 HELIX 5 5 MET F 372 ASP F 377 1 6 HELIX 6 6 ASP F 377 TYR F 384 1 8 HELIX 7 7 LEU F 421 GLN F 427 1 7 HELIX 8 8 ARG F 429 GLY F 441 1 13 HELIX 9 9 GLY F 441 GLY F 451 1 11 HELIX 10 10 HIS F 460 ILE F 465 5 6 HELIX 11 11 SER F 479 ASN F 492 1 14 HELIX 12 12 LYS F 524 TYR F 541 1 18 HELIX 13 13 GLY F 544 TYR F 548 5 5 HELIX 14 14 VAL F 607 PHE F 611 5 5 HELIX 15 15 LEU F 612 GLU F 627 1 16 SHEET 1 AA 5 LEU A 62 ASP A 65 0 SHEET 2 AA 5 LYS A 54 TYR A 56 -1 O ILE A 55 N ILE A 63 SHEET 3 AA 5 MET F 296 THR F 300 1 O VAL F 298 N TYR A 56 SHEET 4 AA 5 ILE F 502 PHE F 507 -1 N ASN F 503 O TYR F 299 SHEET 5 AA 5 LYS F 512 GLU F 514 -1 O LYS F 513 N VAL F 505 SHEET 1 FA 5 VAL F 341 LEU F 345 0 SHEET 2 FA 5 GLN F 328 ASP F 335 -1 O SER F 331 N LEU F 345 SHEET 3 FA 5 TYR F 591 GLY F 598 -1 O SER F 592 N VAL F 334 SHEET 4 FA 5 ASP F 581 TYR F 587 -1 O GLU F 582 N THR F 597 SHEET 5 FA 5 ALA F 555 THR F 560 -1 O ALA F 555 N TYR F 587 SHEET 1 FB 2 MET F 393 ASP F 396 0 SHEET 2 FB 2 GLY F 417 THR F 420 -1 O GLY F 417 N ASP F 396 SHEET 1 FC 2 TYR F 399 ASN F 400 0 SHEET 2 FC 2 PRO F 407 VAL F 408 -1 O VAL F 408 N TYR F 399 SHEET 1 FD 2 ILE F 495 TYR F 496 0 SHEET 2 FD 2 THR F 520 ARG F 521 -1 O THR F 520 N TYR F 496 SHEET 1 FE 2 LEU F 640 ASN F 643 0 SHEET 2 FE 2 PHE F 646 LYS F 649 -1 O PHE F 646 N ASN F 643 LINK OG1 THR F 364 BA BA F1652 1555 1555 2.87 LINK O THR F 364 BA BA F1652 1555 1555 2.77 LINK OG SER F 472 BA BA F1652 1555 1555 2.83 LINK O ASN F 473 BA BA F1652 1555 1555 2.83 LINK O TYR F 476 BA BA F1652 1555 1555 2.73 LINK BA BA F1652 O HOH F2059 1555 1555 2.85 LINK BA BA F1652 O HOH F2119 1555 1555 2.89 SITE 1 AC1 7 THR F 364 SER F 472 ASN F 473 TYR F 476 SITE 2 AC1 7 HOH F2059 HOH F2118 HOH F2119 SITE 1 AC2 10 SER F 370 TRP F 411 PHE F 416 SER F 428 SITE 2 AC2 10 THR F 543 THR F 558 GLY F 559 THR F 560 SITE 3 AC2 10 GLU F 582 HOH F2194 CRYST1 122.960 67.030 49.130 90.00 100.89 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008133 0.000000 0.001565 0.00000 SCALE2 0.000000 0.014919 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020727 0.00000