HEADER TRANSPORT PROTEIN 20-JUN-07 2V3Q TITLE SERENDIPITOUS DISCOVERY AND X-RAY STRUCTURE OF A HUMAN TITLE 2 PHOSPHATE BINDING APOLIPOPROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN PHOSPHATE BINDING PROTEIN; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 TISSUE: HUMAN PLASMA KEYWDS ATHEROSCLEROSIS, HDL, MISSING GENE, PARAOXONASE, PHOSPHATEMIA, KEYWDS 2 TRANSPORT PROTEIN, TRANSPORTER EXPDTA X-RAY DIFFRACTION AUTHOR R.MORALES,A.BERNA,P.CARPENTIER,M.ELIAS,C.CONTRERAS-MARTEL,F.RENAULT, AUTHOR 2 M.NICODEME,M.-L.CHESNE-SECK,F.BERNIER,J.DUPUY,C.SCHAEFFER,H.DIEMER, AUTHOR 3 A.VAN DORSSELAER,J.C.FONTECILLA,P.MASSON,D.ROCHU,E.CHABRIERE REVDAT 3 27-JAN-16 2V3Q 1 REMARK VERSN FORMUL REVDAT 2 24-FEB-09 2V3Q 1 VERSN REVDAT 1 22-JUL-08 2V3Q 0 SPRSDE 22-JUL-08 2V3Q 2CAP JRNL AUTH H.DIEMER,M.ELIAS,F.RENAULT,D.ROCHU,C.CONTRERAS-MARTEL, JRNL AUTH 2 C.SCHAEFFER,A.VAN DORSSELAER,E.CHABRIERE JRNL TITL TANDEM USE OF X-RAY CRYSTALLOGRAPHY AND MASS SPECTROMETRY JRNL TITL 2 TO OBTAIN AB INITIO THE COMPLETE AND EXACT AMINO ACIDS JRNL TITL 3 SEQUENCE OF HPBP, A HUMAN 38KDA APOLIPOPROTEIN JRNL REF PROTEINS: STRUCT., FUNCT., V. 71 1708 2008 JRNL REF 2 BIOINF. JRNL REFN ISSN 0887-3585 JRNL PMID 18076037 JRNL DOI 10.1002/PROT.21866 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.MORALES,A.BERNA,P.CARPENTIER,C.CONTRERAS-MARTEL,F.RENAULT, REMARK 1 AUTH 2 M.NICODEME,M.-L.CHESNE-SECK,F.BERNIER,J.DUPUY,C.SCHAEFFER, REMARK 1 AUTH 3 H.DIEMER,A.VAN DORSSELAER,J.C.FONTECILLA-CAMPS,P.MASSON, REMARK 1 AUTH 4 D.ROCHU,E.CHABRIERE REMARK 1 TITL SERENDIPITOUS DISCOVERY AND X-RAY STRUCTURE OF A HUMAN REMARK 1 TITL 2 PHOSPHATE BINDING APOLIPOPROTEIN. REMARK 1 REF STRUCTURE V. 14 601 2006 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 16531243 REMARK 1 DOI 10.1016/J.STR.2005.12.012 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 28698 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.130 REMARK 3 R VALUE (WORKING SET) : 0.127 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1495 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1957 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1830 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2788 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 77 REMARK 3 SOLVENT ATOMS : 694 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.122 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.126 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.449 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2925 ; 0.029 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3990 ; 2.142 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 400 ; 6.574 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;35.869 ;24.630 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 408 ;12.162 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;15.675 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 457 ; 0.186 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2222 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1592 ; 0.227 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2038 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 555 ; 0.205 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 56 ; 0.244 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1954 ; 1.260 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3057 ; 1.732 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1121 ; 2.840 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 921 ; 3.946 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2V3Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JUN-07. REMARK 100 THE PDBE ID CODE IS EBI-32976. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934, 0.7228, 0.718758 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30194 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.90 REMARK 200 RESOLUTION RANGE LOW (A) : 48.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7 REMARK 200 R MERGE (I) : 0.09 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.78 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.23 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.31 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM CACODYLATE BUFFER PH 6, REMARK 280 AMMONIUM SULFATE 2M AND SODIUM CHLORIDE 1MM REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.94450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.94450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 48.12250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.42150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 48.12250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.42150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.94450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 48.12250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.42150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 44.94450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 48.12250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.42150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 HOH A2231 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 POTENTIALLY INVOLVED IN ATHEROSCLEROSIS REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1B THR A 170 O HOH A 2379 1.95 REMARK 500 OD1B ASN A 367 O HOH A 2640 1.98 REMARK 500 ND2B ASN A 367 O HOH A 2639 1.86 REMARK 500 C1 EDO A 1390 O HOH A 2684 2.05 REMARK 500 O HOH A 2041 O HOH A 2439 2.11 REMARK 500 O HOH A 2055 O HOH A 2064 2.15 REMARK 500 O HOH A 2055 O HOH A 2143 2.08 REMARK 500 O HOH A 2186 O HOH A 2187 2.17 REMARK 500 O HOH A 2200 O HOH A 2213 2.10 REMARK 500 O HOH A 2277 O HOH A 2543 2.11 REMARK 500 O HOH A 2298 O HOH A 2581 2.19 REMARK 500 O HOH A 2438 O HOH A 2442 1.81 REMARK 500 O HOH A 2483 O HOH A 2554 2.19 REMARK 500 O HOH A 2542 O HOH A 2543 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 C1 EDO A 1395 C1 EDO A 1395 3655 1.44 REMARK 500 C1 EDO A 1395 C2 EDO A 1395 3655 0.72 REMARK 500 C1 EDO A 1395 O2 EDO A 1395 3655 2.17 REMARK 500 O1 EDO A 1395 C2 EDO A 1395 3655 0.93 REMARK 500 O1 EDO A 1395 O2 EDO A 1395 3655 1.27 REMARK 500 C2 EDO A 1395 C2 EDO A 1395 3655 1.74 REMARK 500 O HOH A 2294 O HOH A 2684 6555 2.18 REMARK 500 O HOH A 2341 O HOH A 2341 4566 1.50 REMARK 500 O HOH A 2371 O HOH A 2683 6555 2.11 REMARK 500 O HOH A 2399 O HOH A 2399 4566 0.34 REMARK 500 O HOH A 2474 O HOH A 2566 6555 2.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 7 130.91 -38.04 REMARK 500 ASP A 200 106.10 -58.45 REMARK 500 ASN A 329 -169.49 -121.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 THR A 170 24.6 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1377 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1378 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A1379 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1382 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1383 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1384 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1385 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1386 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1387 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1388 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1389 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1390 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1391 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1392 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1393 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1394 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1395 DBREF 2V3Q A 1 376 UNP P85173 P85173_HUMAN 1 376 SEQRES 1 A 376 ASP ILE ASN GLY GLY GLY ALA THR LEU PRO GLN LYS LEU SEQRES 2 A 376 TYR LEU THR PRO ASP VAL LEU THR ALA GLY PHE ALA PRO SEQRES 3 A 376 TYR ILE GLY VAL GLY SER GLY LYS GLY LYS ILE ALA PHE SEQRES 4 A 376 LEU GLU ASN LYS TYR ASN GLN PHE GLY THR ASP THR THR SEQRES 5 A 376 LYS ASN VAL HIS TRP ALA GLY SER ASP SER LYS LEU THR SEQRES 6 A 376 ALA THR GLU LEU ALA THR TYR ALA ALA ASP LYS GLU PRO SEQRES 7 A 376 GLY TRP GLY LYS LEU ILE GLN VAL PRO SER VAL ALA THR SEQRES 8 A 376 SER VAL ALA ILE PRO PHE ARG LYS ALA GLY ALA ASN ALA SEQRES 9 A 376 VAL ASP LEU SER VAL LYS GLU LEU CYS GLY VAL PHE SER SEQRES 10 A 376 GLY ARG ILE ALA ASP TRP SER GLY ILE THR GLY ALA GLY SEQRES 11 A 376 ARG SER GLY PRO ILE GLN VAL VAL TYR ARG ALA GLU SER SEQRES 12 A 376 SER GLY THR THR GLU LEU PHE THR ARG PHE LEU ASN ALA SEQRES 13 A 376 LYS CYS THR THR GLU PRO GLY THR PHE ALA VAL THR THR SEQRES 14 A 376 THR PHE ALA ASN SER TYR SER LEU GLY LEU THR PRO LEU SEQRES 15 A 376 ALA GLY ALA VAL ALA ALA THR GLY SER ASP GLY VAL MET SEQRES 16 A 376 ALA ALA LEU ASN ASP THR THR VAL ALA GLU GLY ARG ILE SEQRES 17 A 376 THR TYR ILE SER PRO ASP PHE ALA ALA PRO THR LEU ALA SEQRES 18 A 376 GLY LEU ASP ASP ALA THR LYS VAL ALA ARG VAL GLY LYS SEQRES 19 A 376 GLY VAL VAL ASN GLY VAL ALA VAL GLU GLY LYS SER PRO SEQRES 20 A 376 ALA ALA ALA ASN VAL SER ALA ALA ILE SER VAL VAL PRO SEQRES 21 A 376 LEU PRO ALA ALA ALA ASP ARG GLY ASN PRO ASP VAL TRP SEQRES 22 A 376 VAL PRO VAL PHE GLY ALA THR THR GLY GLY GLY VAL VAL SEQRES 23 A 376 ALA TYR PRO ASP SER GLY TYR PRO ILE LEU GLY PHE THR SEQRES 24 A 376 ASN LEU ILE PHE SER GLN CYS TYR ALA ASN ALA THR GLN SEQRES 25 A 376 THR GLY GLN VAL ARG ASP PHE PHE THR LYS HIS TYR GLY SEQRES 26 A 376 THR SER ALA ASN ASN ASP ALA ALA ILE GLU ALA ASN ALA SEQRES 27 A 376 PHE VAL PRO LEU PRO SER ASN TRP LYS ALA ALA VAL ARG SEQRES 28 A 376 ALA SER PHE LEU THR ALA SER ASN ALA LEU SER ILE GLY SEQRES 29 A 376 ASN THR ASN VAL CYS ASN GLY LYS GLY ARG PRO GLN HET GOL A1377 6 HET GOL A1378 6 HET PO4 A1379 5 HET GOL A1382 6 HET EDO A1383 4 HET EDO A1384 4 HET EDO A1385 4 HET EDO A1386 4 HET EDO A1387 4 HET EDO A1388 4 HET EDO A1389 4 HET EDO A1390 4 HET EDO A1391 4 HET EDO A1392 4 HET GOL A1393 6 HET EDO A1394 4 HET EDO A1395 4 HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 PO4 O4 P 3- FORMUL 3 GOL 4(C3 H8 O3) FORMUL 4 EDO 12(C2 H6 O2) FORMUL 5 HOH *694(H2 O) HELIX 1 1 PRO A 10 LEU A 15 1 6 HELIX 2 2 GLY A 31 ASN A 42 1 12 HELIX 3 3 LYS A 43 PHE A 47 5 5 HELIX 4 4 THR A 65 LYS A 76 1 12 HELIX 5 5 LYS A 76 GLY A 81 1 6 HELIX 6 6 SER A 108 GLY A 118 1 11 HELIX 7 7 TRP A 123 ILE A 126 5 4 HELIX 8 8 SER A 144 CYS A 158 1 15 HELIX 9 9 THR A 170 SER A 174 5 5 HELIX 10 10 THR A 189 ASP A 200 1 12 HELIX 11 11 SER A 212 ALA A 217 1 6 HELIX 12 12 THR A 219 ASP A 225 5 7 HELIX 13 13 ALA A 249 VAL A 258 1 10 HELIX 14 14 ALA A 263 ARG A 267 5 5 HELIX 15 15 ASN A 269 VAL A 274 5 6 HELIX 16 16 ASN A 309 TYR A 324 1 16 HELIX 17 17 ASN A 330 ASN A 337 1 8 HELIX 18 18 PRO A 343 LEU A 355 1 13 HELIX 19 19 ASN A 365 ASN A 370 1 6 SHEET 1 AA 5 ILE A 28 GLY A 29 0 SHEET 2 AA 5 GLY A 4 GLY A 6 1 O GLY A 4 N ILE A 28 SHEET 3 AA 5 TRP A 57 SER A 60 1 O TRP A 57 N GLY A 5 SHEET 4 AA 5 LEU A 296 SER A 304 -1 O ASN A 300 N SER A 60 SHEET 5 AA 5 LEU A 83 SER A 92 -1 O ILE A 84 N PHE A 303 SHEET 1 AB 2 ASP A 106 LEU A 107 0 SHEET 2 AB 2 ARG A 231 VAL A 232 1 O ARG A 231 N LEU A 107 SHEET 1 AC 3 VAL A 186 ALA A 188 0 SHEET 2 AC 3 GLN A 136 ARG A 140 1 O VAL A 137 N VAL A 186 SHEET 3 AC 3 ARG A 207 ILE A 208 1 O ILE A 208 N VAL A 138 SHEET 1 AD 2 GLY A 235 VAL A 237 0 SHEET 2 AD 2 VAL A 240 VAL A 242 -1 O VAL A 240 N VAL A 237 SHEET 1 AE 2 VAL A 276 GLY A 278 0 SHEET 2 AE 2 VAL A 285 ALA A 287 1 O VAL A 286 N GLY A 278 SSBOND 1 CYS A 113 CYS A 158 1555 1555 2.04 SSBOND 2 CYS A 306 CYS A 369 1555 1555 2.12 SITE 1 AC1 7 SER A 327 ALA A 328 ASN A 329 HOH A2587 SITE 2 AC1 7 HOH A2588 HOH A2661 HOH A2662 SITE 1 AC2 5 THR A 168 THR A 169 THR A 170 HOH A2665 SITE 2 AC2 5 HOH A2666 SITE 1 AC3 10 ALA A 7 THR A 8 LEU A 9 GLY A 31 SITE 2 AC3 10 SER A 32 ASP A 61 ARG A 140 SER A 144 SITE 3 AC3 10 GLY A 145 THR A 146 SITE 1 AC4 8 ASP A 1 ASN A 3 LYS A 53 HOH A2165 SITE 2 AC4 8 HOH A2660 HOH A2667 HOH A2668 HOH A2669 SITE 1 AC5 7 ASP A 1 GLN A 312 GLN A 376 HOH A2007 SITE 2 AC5 7 HOH A2288 HOH A2570 HOH A2660 SITE 1 AC6 5 GLY A 101 ALA A 102 GLY A 130 GLY A 283 SITE 2 AC6 5 HOH A2268 SITE 1 AC7 4 ARG A 119 ALA A 121 ASP A 122 HOH A2672 SITE 1 AC8 5 ARG A 317 HOH A2579 HOH A2673 HOH A2674 SITE 2 AC8 5 HOH A2685 SITE 1 AC9 7 LEU A 69 ASN A 269 HOH A2224 HOH A2675 SITE 2 AC9 7 HOH A2676 HOH A2677 HOH A2678 SITE 1 BC1 7 ASN A 103 GLY A 128 ALA A 129 GLY A 130 SITE 2 BC1 7 EDO A1392 HOH A2266 HOH A2679 SITE 1 BC2 6 PRO A 289 ASP A 290 SER A 291 HOH A2545 SITE 2 BC2 6 HOH A2680 HOH A2681 SITE 1 BC3 7 ARG A 317 LEU A 355 ALA A 357 HOH A2682 SITE 2 BC3 7 HOH A2683 HOH A2684 HOH A2685 SITE 1 BC4 3 ARG A 119 HOH A2686 HOH A2687 SITE 1 BC5 8 THR A 127 GLY A 128 EDO A1388 HOH A2066 SITE 2 BC5 8 HOH A2155 HOH A2511 HOH A2515 HOH A2517 SITE 1 BC6 9 VAL A 259 PRO A 260 PRO A 262 VAL A 272 SITE 2 BC6 9 PRO A 275 GLY A 284 HOH A2536 HOH A2688 SITE 3 BC6 9 HOH A2689 SITE 1 BC7 9 LYS A 99 ARG A 131 SER A 132 GLY A 283 SITE 2 BC7 9 HOH A2261 HOH A2319 HOH A2690 HOH A2692 SITE 3 BC7 9 HOH A2693 SITE 1 BC8 3 THR A 219 ALA A 221 HOH A2450 CRYST1 96.245 86.843 89.889 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010390 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011515 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011125 0.00000