HEADER REGULATOR 27-JUN-07 2V42 TITLE CRYSTAL STRUCTURE OF RSEB: A SENSOR FOR PERIPLASMIC STRESS RESPONSE IN TITLE 2 E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIGMA-E FACTOR REGULATORY PROTEIN RSEB; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 23-318; COMPND 5 SYNONYM: RSEB; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 469008; SOURCE 4 STRAIN: K12; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-22B KEYWDS REGULATORY PROTEIN, LIPOPROTEIN BINDING, SENSOR FOR PERIPLASMIC KEYWDS 2 STRESS, REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR P.WOLLMANN,K.ZETH REVDAT 5 08-MAY-24 2V42 1 REMARK REVDAT 4 13-JUL-11 2V42 1 VERSN REVDAT 3 24-FEB-09 2V42 1 VERSN REVDAT 2 25-SEP-07 2V42 1 JRNL REVDAT 1 28-AUG-07 2V42 0 JRNL AUTH P.WOLLMANN,K.ZETH JRNL TITL THE STRUCTURE OF RSEB: A SENSOR IN PERIPLASMIC STRESS JRNL TITL 2 RESPONSE OF E. COLI. JRNL REF J.MOL.BIOL. V. 372 927 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17692869 JRNL DOI 10.1016/J.JMB.2007.06.039 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 27882 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1492 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1952 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3250 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4487 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 44 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.24000 REMARK 3 B22 (A**2) : -0.24000 REMARK 3 B33 (A**2) : 0.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.418 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.292 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.232 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.370 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4595 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6240 ; 1.412 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 563 ; 7.262 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 220 ;36.946 ;23.091 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 764 ;19.091 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 50 ;16.218 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 704 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3506 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1947 ; 0.224 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3149 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 187 ; 0.157 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 60 ; 0.218 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.252 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2894 ; 0.596 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4614 ; 1.042 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1880 ; 1.373 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1626 ; 2.372 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 28 A 88 2 REMARK 3 1 B 28 B 88 2 REMARK 3 2 A 89 A 122 5 REMARK 3 2 B 89 B 122 5 REMARK 3 3 A 123 A 191 2 REMARK 3 3 B 123 B 191 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 520 ; 0.07 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 A (A): 649 ; 0.47 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 128 ; 0.94 ; 5.00 REMARK 3 TIGHT THERMAL 1 A (A**2): 520 ; 0.08 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 649 ; 0.57 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 128 ; 1.20 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 221 A 312 2 REMARK 3 1 B 221 B 312 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 A (A): 368 ; 0.04 ; 0.05 REMARK 3 MEDIUM POSITIONAL 2 A (A): 342 ; 0.46 ; 0.50 REMARK 3 TIGHT THERMAL 2 A (A**2): 368 ; 0.18 ; 0.50 REMARK 3 MEDIUM THERMAL 2 A (A**2): 342 ; 0.36 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 211 REMARK 3 ORIGIN FOR THE GROUP (A): 36.1560 116.9190 13.6070 REMARK 3 T TENSOR REMARK 3 T11: -0.1533 T22: -0.1268 REMARK 3 T33: -0.0587 T12: -0.0042 REMARK 3 T13: 0.0149 T23: 0.0528 REMARK 3 L TENSOR REMARK 3 L11: 1.6498 L22: 2.4285 REMARK 3 L33: 4.7820 L12: 0.2524 REMARK 3 L13: 0.0252 L23: 0.0414 REMARK 3 S TENSOR REMARK 3 S11: -0.1180 S12: -0.1434 S13: -0.0090 REMARK 3 S21: 0.0354 S22: 0.0259 S23: -0.1369 REMARK 3 S31: 0.1560 S32: 0.0783 S33: 0.0921 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 216 A 316 REMARK 3 ORIGIN FOR THE GROUP (A): 41.1830 89.8640 11.6660 REMARK 3 T TENSOR REMARK 3 T11: 0.1949 T22: -0.2182 REMARK 3 T33: 0.0407 T12: 0.0161 REMARK 3 T13: 0.1714 T23: 0.0616 REMARK 3 L TENSOR REMARK 3 L11: 1.5309 L22: 7.2448 REMARK 3 L33: 4.6518 L12: -1.7146 REMARK 3 L13: 1.7275 L23: -4.1257 REMARK 3 S TENSOR REMARK 3 S11: -0.0498 S12: -0.1730 S13: -0.1437 REMARK 3 S21: -0.7066 S22: -0.3193 S23: -0.6525 REMARK 3 S31: 0.9043 S32: 0.3439 S33: 0.3691 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 26 B 209 REMARK 3 ORIGIN FOR THE GROUP (A): 15.6180 131.1740 30.0050 REMARK 3 T TENSOR REMARK 3 T11: -0.0789 T22: 0.0386 REMARK 3 T33: 0.0629 T12: 0.0015 REMARK 3 T13: -0.0891 T23: -0.0947 REMARK 3 L TENSOR REMARK 3 L11: 2.3003 L22: 2.1234 REMARK 3 L33: 3.4009 L12: 0.4092 REMARK 3 L13: -0.4303 L23: -0.2412 REMARK 3 S TENSOR REMARK 3 S11: -0.0108 S12: -0.1107 S13: 0.3868 REMARK 3 S21: 0.0177 S22: -0.0557 S23: 0.3093 REMARK 3 S31: -0.2125 S32: -0.4304 S33: 0.0665 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 218 B 315 REMARK 3 ORIGIN FOR THE GROUP (A): -10.7420 123.1980 32.8560 REMARK 3 T TENSOR REMARK 3 T11: -0.1812 T22: 0.1465 REMARK 3 T33: 0.0343 T12: -0.0584 REMARK 3 T13: 0.0254 T23: -0.1455 REMARK 3 L TENSOR REMARK 3 L11: 8.4168 L22: 1.0850 REMARK 3 L33: 3.1261 L12: 0.9698 REMARK 3 L13: 3.4384 L23: 0.5959 REMARK 3 S TENSOR REMARK 3 S11: -0.0287 S12: -0.4853 S13: 0.5772 REMARK 3 S21: -0.0619 S22: -0.4394 S23: 0.4082 REMARK 3 S31: 0.0177 S32: -0.4981 S33: 0.4681 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2V42 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1290033002. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28941 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 2.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.400 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 12.40 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.8 REMARK 200 DATA REDUNDANCY IN SHELL : 12.00 REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 2.4 M REMARK 280 SODIUM MALONATE PH 7, 0.3 M DIMETHYLETHYLAMMONIUM PROPANE REMARK 280 SULFONATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 82.14500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 82.14500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 82.14500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 82.14500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 82.14500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 82.14500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 82.14500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 82.14500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 14.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2004 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 22 REMARK 465 VAL A 212 REMARK 465 PRO A 213 REMARK 465 VAL A 214 REMARK 465 GLY A 215 REMARK 465 ALA A 317 REMARK 465 GLN A 318 REMARK 465 HIS A 319 REMARK 465 HIS A 320 REMARK 465 HIS A 321 REMARK 465 HIS A 322 REMARK 465 HIS A 323 REMARK 465 HIS A 324 REMARK 465 MET B 22 REMARK 465 ALA B 23 REMARK 465 THR B 24 REMARK 465 PRO B 25 REMARK 465 PRO B 95 REMARK 465 GLY B 96 REMARK 465 LEU B 97 REMARK 465 GLU B 98 REMARK 465 LEU B 210 REMARK 465 SER B 211 REMARK 465 VAL B 212 REMARK 465 PRO B 213 REMARK 465 VAL B 214 REMARK 465 GLY B 215 REMARK 465 GLU B 216 REMARK 465 LYS B 217 REMARK 465 ALA B 316 REMARK 465 ALA B 317 REMARK 465 GLN B 318 REMARK 465 HIS B 319 REMARK 465 HIS B 320 REMARK 465 HIS B 321 REMARK 465 HIS B 322 REMARK 465 HIS B 323 REMARK 465 HIS B 324 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 217 CD CE NZ REMARK 470 LYS A 219 CD CE NZ REMARK 470 LYS A 306 CD CE NZ REMARK 470 LYS A 313 CG CE NZ REMARK 470 LYS B 52 CG CD CE NZ REMARK 470 LEU B 65 CD1 CD2 REMARK 470 ARG B 68 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 120 CG CD CE NZ REMARK 470 LEU B 201 CD1 CD2 REMARK 470 LYS B 203 CG CD CE NZ REMARK 470 LYS B 219 CE NZ REMARK 470 ARG B 239 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 306 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 58 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 26 157.92 -49.74 REMARK 500 SER A 110 -116.61 -85.94 REMARK 500 LEU A 111 148.19 -36.63 REMARK 500 LEU A 114 -30.19 -33.59 REMARK 500 ASP A 174 163.50 -45.78 REMARK 500 LEU A 258 -53.80 -132.32 REMARK 500 THR A 279 -76.08 -98.61 REMARK 500 ASP A 290 -118.47 65.34 REMARK 500 GLU A 310 31.75 -90.94 REMARK 500 SER B 110 -74.65 -147.53 REMARK 500 LEU B 111 121.47 -31.67 REMARK 500 SER B 113 -19.66 -45.46 REMARK 500 ASP B 174 157.36 -44.88 REMARK 500 ASN B 191 -4.54 74.73 REMARK 500 SER B 195 154.27 -48.43 REMARK 500 PRO B 208 127.54 -10.97 REMARK 500 LEU B 258 -52.46 -134.15 REMARK 500 THR B 279 -75.47 -100.41 REMARK 500 ASP B 290 -125.21 69.61 REMARK 500 GLU B 310 33.97 -91.60 REMARK 500 PHE B 314 -168.49 -102.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 109 SER B 110 132.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDS A1317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDS B1317 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2V43 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RSEB: A SENSOR FOR PERIPLASMIC STRESS RESPONSE REMARK 900 IN E. COLI REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUE 22 IS A METHIONINE WHICH WAS CLONED THERE TO HAVE A REMARK 999 START CODON. RESIDUES 319-324 DO NOT MATCH THE P0AFX9 AS IT REMARK 999 AS A HIS-TAG, NEEDED FOR PURIFICATION OF THE PROTEIN DBREF 2V42 A 22 22 PDB 2V42 2V42 22 22 DBREF 2V42 A 23 318 UNP P0AFX9 RSEB_ECOLI 23 318 DBREF 2V42 A 319 324 PDB 2V42 2V42 319 324 DBREF 2V42 B 22 22 PDB 2V42 2V42 22 22 DBREF 2V42 B 23 318 UNP P0AFX9 RSEB_ECOLI 23 318 DBREF 2V42 B 319 324 PDB 2V42 2V42 319 324 SEQRES 1 A 303 MET ALA THR PRO ALA SER GLY ALA LEU LEU GLN GLN MET SEQRES 2 A 303 ASN LEU ALA SER GLN SER LEU ASN TYR GLU LEU SER PHE SEQRES 3 A 303 ILE SER ILE ASN LYS GLN GLY VAL GLU SER LEU ARG TYR SEQRES 4 A 303 ARG HIS ALA ARG LEU ASP ASN ARG PRO LEU ALA GLN LEU SEQRES 5 A 303 LEU GLN MET ASP GLY PRO ARG ARG GLU VAL VAL GLN ARG SEQRES 6 A 303 GLY ASN GLU ILE SER TYR PHE GLU PRO GLY LEU GLU PRO SEQRES 7 A 303 PHE THR LEU ASN GLY ASP TYR ILE VAL ASP SER LEU PRO SEQRES 8 A 303 SER LEU ILE TYR THR ASP PHE LYS ARG LEU SER PRO TYR SEQRES 9 A 303 TYR ASP PHE ILE SER VAL GLY ARG THR ARG ILE ALA ASP SEQRES 10 A 303 ARG LEU CYS GLU VAL ILE ARG VAL VAL ALA ARG ASP GLY SEQRES 11 A 303 THR ARG TYR SER TYR ILE VAL TRP MET ASP THR GLU SER SEQRES 12 A 303 LYS LEU PRO MET ARG VAL ASP LEU LEU ASP ARG ASP GLY SEQRES 13 A 303 GLU THR LEU GLU GLN PHE ARG VAL ILE ALA PHE ASN VAL SEQRES 14 A 303 ASN GLN ASP ILE SER SER SER MET GLN THR LEU ALA LYS SEQRES 15 A 303 ALA ASN LEU PRO PRO LEU LEU SER VAL PRO VAL GLY GLU SEQRES 16 A 303 LYS ALA LYS PHE SER TRP THR PRO THR TRP LEU PRO GLN SEQRES 17 A 303 GLY PHE SER GLU VAL SER SER SER ARG ARG PRO LEU PRO SEQRES 18 A 303 THR MET ASP ASN MET PRO ILE GLU SER ARG LEU TYR SER SEQRES 19 A 303 ASP GLY LEU PHE SER PHE SER VAL ASN VAL ASN ARG ALA SEQRES 20 A 303 THR PRO SER SER THR ASP GLN MET LEU ARG THR GLY ARG SEQRES 21 A 303 ARG THR VAL SER THR SER VAL ARG ASP ASN ALA GLU ILE SEQRES 22 A 303 THR ILE VAL GLY GLU LEU PRO PRO GLN THR ALA LYS ARG SEQRES 23 A 303 ILE ALA GLU ASN ILE LYS PHE GLY ALA ALA GLN HIS HIS SEQRES 24 A 303 HIS HIS HIS HIS SEQRES 1 B 303 MET ALA THR PRO ALA SER GLY ALA LEU LEU GLN GLN MET SEQRES 2 B 303 ASN LEU ALA SER GLN SER LEU ASN TYR GLU LEU SER PHE SEQRES 3 B 303 ILE SER ILE ASN LYS GLN GLY VAL GLU SER LEU ARG TYR SEQRES 4 B 303 ARG HIS ALA ARG LEU ASP ASN ARG PRO LEU ALA GLN LEU SEQRES 5 B 303 LEU GLN MET ASP GLY PRO ARG ARG GLU VAL VAL GLN ARG SEQRES 6 B 303 GLY ASN GLU ILE SER TYR PHE GLU PRO GLY LEU GLU PRO SEQRES 7 B 303 PHE THR LEU ASN GLY ASP TYR ILE VAL ASP SER LEU PRO SEQRES 8 B 303 SER LEU ILE TYR THR ASP PHE LYS ARG LEU SER PRO TYR SEQRES 9 B 303 TYR ASP PHE ILE SER VAL GLY ARG THR ARG ILE ALA ASP SEQRES 10 B 303 ARG LEU CYS GLU VAL ILE ARG VAL VAL ALA ARG ASP GLY SEQRES 11 B 303 THR ARG TYR SER TYR ILE VAL TRP MET ASP THR GLU SER SEQRES 12 B 303 LYS LEU PRO MET ARG VAL ASP LEU LEU ASP ARG ASP GLY SEQRES 13 B 303 GLU THR LEU GLU GLN PHE ARG VAL ILE ALA PHE ASN VAL SEQRES 14 B 303 ASN GLN ASP ILE SER SER SER MET GLN THR LEU ALA LYS SEQRES 15 B 303 ALA ASN LEU PRO PRO LEU LEU SER VAL PRO VAL GLY GLU SEQRES 16 B 303 LYS ALA LYS PHE SER TRP THR PRO THR TRP LEU PRO GLN SEQRES 17 B 303 GLY PHE SER GLU VAL SER SER SER ARG ARG PRO LEU PRO SEQRES 18 B 303 THR MET ASP ASN MET PRO ILE GLU SER ARG LEU TYR SER SEQRES 19 B 303 ASP GLY LEU PHE SER PHE SER VAL ASN VAL ASN ARG ALA SEQRES 20 B 303 THR PRO SER SER THR ASP GLN MET LEU ARG THR GLY ARG SEQRES 21 B 303 ARG THR VAL SER THR SER VAL ARG ASP ASN ALA GLU ILE SEQRES 22 B 303 THR ILE VAL GLY GLU LEU PRO PRO GLN THR ALA LYS ARG SEQRES 23 B 303 ILE ALA GLU ASN ILE LYS PHE GLY ALA ALA GLN HIS HIS SEQRES 24 B 303 HIS HIS HIS HIS HET NDS A1317 12 HET NDS B1317 12 HETNAM NDS ETHYL DIMETHYL AMMONIO PROPANE SULFONATE FORMUL 3 NDS 2(C7 H17 N O3 S) FORMUL 5 HOH *44(H2 O) HELIX 1 1 ALA A 26 LEU A 41 1 16 HELIX 2 2 PRO A 112 THR A 117 5 6 HELIX 3 3 ASP A 118 SER A 123 1 6 HELIX 4 4 SER A 195 ALA A 204 1 10 HELIX 5 5 PRO A 301 GLU A 310 1 10 HELIX 6 6 ALA B 26 LEU B 41 1 16 HELIX 7 7 PRO B 112 THR B 117 5 6 HELIX 8 8 ASP B 118 SER B 123 1 6 HELIX 9 9 SER B 195 ALA B 204 1 10 HELIX 10 10 PRO B 301 GLU B 310 1 10 SHEET 1 AA11 PHE A 100 ASN A 103 0 SHEET 2 AA11 GLU A 89 PHE A 93 -1 O ILE A 90 N LEU A 102 SHEET 3 AA11 GLU A 82 ARG A 86 -1 O GLU A 82 N PHE A 93 SHEET 4 AA11 PRO A 69 GLN A 75 -1 O ALA A 71 N GLN A 85 SHEET 5 AA11 GLY A 54 ARG A 64 -1 O ARG A 59 N LEU A 74 SHEET 6 AA11 TYR A 43 ASN A 51 -1 O TYR A 43 N HIS A 62 SHEET 7 AA11 THR A 179 VAL A 190 -1 O GLN A 182 N ILE A 50 SHEET 8 AA11 PRO A 167 LEU A 173 -1 O MET A 168 N VAL A 185 SHEET 9 AA11 SER A 155 ASP A 161 -1 O SER A 155 N LEU A 173 SHEET 10 AA11 ARG A 139 ALA A 148 -1 O GLU A 142 N MET A 160 SHEET 11 AA11 TYR A 126 ILE A 136 -1 O ASP A 127 N VAL A 147 SHEET 1 AB 2 TRP A 222 PRO A 224 0 SHEET 2 AB 2 ILE A 312 PHE A 314 -1 O LYS A 313 N THR A 223 SHEET 1 AC 6 SER A 232 PRO A 240 0 SHEET 2 AC 6 PRO A 248 SER A 255 -1 O ILE A 249 N ARG A 239 SHEET 3 AC 6 SER A 260 ARG A 267 -1 O PHE A 261 N TYR A 254 SHEET 4 AC 6 ALA A 292 GLY A 298 -1 O GLU A 293 N ASN A 266 SHEET 5 AC 6 THR A 283 ARG A 289 -1 O THR A 283 N GLY A 298 SHEET 6 AC 6 GLN A 275 ARG A 278 -1 O GLN A 275 N THR A 286 SHEET 1 BA11 THR B 101 ASN B 103 0 SHEET 2 BA11 GLU B 89 PHE B 93 -1 O ILE B 90 N LEU B 102 SHEET 3 BA11 GLU B 82 ARG B 86 -1 O GLU B 82 N PHE B 93 SHEET 4 BA11 PRO B 69 GLN B 75 -1 O ALA B 71 N GLN B 85 SHEET 5 BA11 GLY B 54 ARG B 64 -1 O ARG B 59 N LEU B 74 SHEET 6 BA11 TYR B 43 ASN B 51 -1 O TYR B 43 N HIS B 62 SHEET 7 BA11 THR B 179 VAL B 190 -1 O GLN B 182 N ILE B 50 SHEET 8 BA11 PRO B 167 LEU B 173 -1 O MET B 168 N VAL B 185 SHEET 9 BA11 SER B 155 ASP B 161 -1 O SER B 155 N LEU B 173 SHEET 10 BA11 ARG B 139 ALA B 148 -1 O GLU B 142 N MET B 160 SHEET 11 BA11 TYR B 126 ILE B 136 -1 O ASP B 127 N VAL B 147 SHEET 1 BB 2 THR B 223 PRO B 224 0 SHEET 2 BB 2 ILE B 312 LYS B 313 -1 O LYS B 313 N THR B 223 SHEET 1 BC 6 SER B 232 PRO B 240 0 SHEET 2 BC 6 PRO B 248 SER B 255 -1 O ILE B 249 N ARG B 239 SHEET 3 BC 6 SER B 260 ARG B 267 -1 O PHE B 261 N TYR B 254 SHEET 4 BC 6 ALA B 292 GLY B 298 -1 O GLU B 293 N ASN B 266 SHEET 5 BC 6 THR B 283 ARG B 289 -1 O THR B 283 N GLY B 298 SHEET 6 BC 6 GLN B 275 ARG B 278 -1 O GLN B 275 N THR B 286 SITE 1 AC1 6 ASP A 174 ARG A 175 ASP A 176 ARG A 278 SITE 2 AC1 6 PRO A 301 PRO A 302 SITE 1 AC2 8 TYR B 154 ASP B 174 ARG B 175 ASP B 176 SITE 2 AC2 8 ARG B 278 PRO B 301 PRO B 302 HOH B2018 CRYST1 164.290 164.290 81.520 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006087 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006087 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012267 0.00000 MTRIX1 1 -0.452280 0.891850 -0.006560 -72.45501 1 MTRIX2 1 0.887030 0.449040 -0.107380 48.26170 1 MTRIX3 1 -0.092830 -0.054380 -0.994200 53.24002 1