HEADER TRANSFERASE 26-SEP-08 2V4S OBSLTE 27-JAN-09 2V4S 2W8K TITLE Y-FAMILY DNA POLYMERASE DPO4 BYPASSING N2-NAPHTHYL-GUANINE TITLE 2 ADDUCT IN SYN ORIENTATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IV; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.7; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: Y-FAMILY DNA POLYMERASE FROM SULFOLOBUS COMPND 7 SOLFATARICUS; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP COMPND 10 *TP*TP*CP*DOC)-3'; COMPND 11 CHAIN: P; COMPND 12 OTHER_DETAILS: 14 BASE PRIMER DNA 5'-GGG GGA AGG ATT CC-3'; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: 5'-D(*TP*CP*AP*CP*N2GP*GP*AP*AP*TP*CP*CP COMPND 15 *TP*TP*CP*CP*CP*CP*C)-3'; COMPND 16 CHAIN: T; COMPND 17 OTHER_DETAILS: 18 BASE TEMPLATE DNA 5'-TCA C(NPG)G AAT CCT COMPND 18 TCC CCC-3' SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 STRAIN: P2; SOURCE 5 ATCC: 35092; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES KEYWDS DNA-DIRECTED DNA POLYMERASE, DNA, DPO4, ADDUCT, N2-ALKYL, KEYWDS 2 CYTOPLASM, MAGNESIUM, TRANSFERASE, METAL-BINDING, MUTATOR KEYWDS 3 PROTEIN, DNA REPLICATION, NUCLEOTIDYLTRANSFERASE, KEYWDS 4 POLYMERASE, DNA DAMAGE, DNA REPAIR, DNA-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR R.L.EOFF,H.ZHANG,M.EGLI,F.P.GUENGERICH REVDAT 2 27-JAN-09 2V4S 1 OBSLTE REVDAT 1 16-DEC-08 2V4S 0 JRNL AUTH H.ZHANG,R.L.EOFF,I.D.KOZEKOV,C.J.RIZZO,M.EGLI, JRNL AUTH 2 F.P.GUENGERICH JRNL TITL VERSATILITY OF Y-FAMILY SULFOLOBUS SOLFATARICUS JRNL TITL 2 DNA POLYMERASE DPO4 IN TRANSLESION SYNTHESIS PAST JRNL TITL 3 BULKY N2-ALKYL GUANINE ADDUCTS. JRNL REF TO BE PUBLISHED JRNL REFN JRNL PMID 19059910 JRNL DOI 10.1074/JBC.M807778200 REMARK 2 REMARK 2 RESOLUTION. 3.1 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 82552.760 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 9806 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 521 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.012 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.19 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 43.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 738 REMARK 3 BIN R VALUE (WORKING SET) : 0.3800 REMARK 3 BIN FREE R VALUE : 0.4080 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 35 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.069 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2754 REMARK 3 NUCLEIC ACID ATOMS : 562 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 79 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 62.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 88.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 17.16000 REMARK 3 B22 (A**2) : -19.92000 REMARK 3 B33 (A**2) : 2.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM SIGMAA (A) : 0.54 REMARK 3 LOW RESOLUTION CUTOFF (A) : 30.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.59 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.79 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.60 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.96 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.250 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.240 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.530 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.570 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 47.93 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : DGTP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : WATER_REP.PARAM REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : DGTP.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : WATER.TOP REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 2V4S COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-SEP-08. REMARK 100 THE PDBE ID CODE IS EBI-37646. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9733 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.10 REMARK 200 RESOLUTION RANGE LOW (A) : 30.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 6.0 REMARK 200 R MERGE (I) : 0.09 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.60 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.0 REMARK 200 R MERGE FOR SHELL (I) : 0.65 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.20 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2BQR REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.3 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.6 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DPO4:DNA COMPLEX (1:1.2 MOLAR REMARK 280 RATIO; 150 MICROMOLAR), 20 MM TRIS HCL (PH 8.0), 15% REMARK 280 POLYETHYLENE GLYCOL 3350 (W/V), 60 MM SODIUM CHLORIDE, 5 REMARK 280 MM MAGNESIUM CHLORIDE, 4% GLYCEROL, 1 MM DGTP. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 47.52000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.95500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.52000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.95500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX : 20140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 ALA A 343 REMARK 465 ILE A 344 REMARK 465 GLY A 345 REMARK 465 LEU A 346 REMARK 465 ASP A 347 REMARK 465 LYS A 348 REMARK 465 PHE A 349 REMARK 465 PHE A 350 REMARK 465 ASP A 351 REMARK 465 THR A 352 REMARK 465 DT T 1 REMARK 465 DC T 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 342 CA C O CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N LYS A 282 - O LYS A 339 2.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 1 N - CA - C ANGL. DEV. = 19.5 DEGREES REMARK 500 LYS A 56 CA - CB - CG ANGL. DEV. = -16.4 DEGREES REMARK 500 LYS A 56 N - CA - C ANGL. DEV. = 17.0 DEGREES REMARK 500 PRO A 60 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 DG T 6 C5' - C4' - C3' ANGL. DEV. = -7.4 DEGREES REMARK 500 DG T 6 O3' - P - O5' ANGL. DEV. = 33.8 DEGREES REMARK 500 DG T 6 O3' - P - OP1 ANGL. DEV. = -52.3 DEGREES REMARK 500 DG T 6 O3' - P - OP2 ANGL. DEV. = -52.3 DEGREES REMARK 500 DG T 6 C3' - O3' - P ANGL. DEV. = 33.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 10 55.26 17.48 REMARK 500 PHE A 11 -74.95 -30.71 REMARK 500 ASN A 20 80.65 172.59 REMARK 500 PRO A 21 0.83 -63.24 REMARK 500 GLU A 38 123.87 -30.50 REMARK 500 VAL A 55 75.55 -115.79 REMARK 500 LYS A 56 -156.18 -105.92 REMARK 500 PRO A 60 147.01 -30.88 REMARK 500 ARG A 77 54.34 -140.83 REMARK 500 GLU A 79 -70.64 -22.43 REMARK 500 SER A 103 -154.90 -146.49 REMARK 500 ASP A 110 76.76 -103.70 REMARK 500 LYS A 114 -37.94 -145.86 REMARK 500 VAL A 140 -169.26 -122.60 REMARK 500 LYS A 148 -39.27 -37.46 REMARK 500 MET A 157 -71.04 -66.11 REMARK 500 ALA A 158 64.87 -56.09 REMARK 500 ASP A 167 169.61 -48.12 REMARK 500 ARG A 176 -60.20 -104.44 REMARK 500 SER A 207 69.13 -113.21 REMARK 500 GLU A 209 89.96 -58.37 REMARK 500 PHE A 210 -63.68 -18.42 REMARK 500 GLU A 219 -45.16 -13.51 REMARK 500 ASP A 231 35.82 35.07 REMARK 500 ASN A 234 22.81 -166.64 REMARK 500 MET A 251 160.22 -49.05 REMARK 500 ARG A 253 119.93 178.78 REMARK 500 ASN A 254 122.12 -30.46 REMARK 500 ARG A 256 -1.67 -157.47 REMARK 500 ASP A 277 110.88 41.32 REMARK 500 LYS A 278 -5.08 64.93 REMARK 500 ILE A 284 125.66 -173.80 REMARK 500 ASP A 292 30.86 -99.79 REMARK 500 ARG A 300 132.59 -177.50 REMARK 500 SER A 315 25.42 -78.48 REMARK 500 VAL A 316 -44.79 -133.37 REMARK 500 LEU A 323 -2.22 -59.82 REMARK 500 GLU A 324 -95.09 -88.15 REMARK 500 ARG A 328 163.98 -22.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DC T 4 0.07 SIDE CHAIN REMARK 500 DA T 7 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DGT A 594 O2A REMARK 620 2 ASP A 105 OD1 49.5 REMARK 620 3 PHE A 8 O 152.6 145.7 REMARK 620 4 DGT A 594 O1B 82.0 91.9 75.8 REMARK 620 5 ASP A 7 OD1 107.5 125.7 80.0 138.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 186 O REMARK 620 2 ALA A 181 O 96.1 REMARK 620 3 HOH A2038 O 142.7 68.0 REMARK 620 4 HOH A2040 O 156.9 90.7 60.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1003 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 294 OD2 REMARK 620 2 DA P 10 OP2 131.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGT A 594 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ASL RELATED DB: PDB REMARK 900 OXOG-MODIFIED POSTINSERTION BINARY COMPLEX REMARK 900 RELATED ID: 1S0M RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A BENZO[A]PYRENE DIOL REMARK 900 EPOXIDE ADDUCTIN A TERNARY COMPLEX WITH A REMARK 900 DNA POLYMERASE REMARK 900 RELATED ID: 2JEG RELATED DB: PDB REMARK 900 THE MOLECULAR BASIS OF SELECTIVITY OF REMARK 900 NUCLEOSIDE TRIPHOSPHATE INCORPORATION OPPOSITE REMARK 900 O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS REMARK 900 DNA POLYMERASE IV: STEADY-STATE AND PRE- REMARK 900 STEADY-STATE KINETICS AND X-RAY REMARK 900 CRYSTALLOGRAPHY OF CORRECT AND INCORRECT REMARK 900 PAIRING REMARK 900 RELATED ID: 1RYS RELATED DB: PDB REMARK 900 REPLICATION OF A CIS-SYN THYMINE DIMER AT REMARK 900 ATOMIC RESOLUTION REMARK 900 RELATED ID: 2J6T RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS REMARK 900 DPO4 DNA POLYMERASE, O6-METHYLGUANINE MODIFIED REMARK 900 DNA, AND DATP. REMARK 900 RELATED ID: 1N56 RELATED DB: PDB REMARK 900 Y-FAMILY DNA POLYMERASE DPO4 IN COMPLEX REMARK 900 WITH DNA CONTAININGABASIC LESION REMARK 900 RELATED ID: 2ATL RELATED DB: PDB REMARK 900 UNMODIFIED INSERTION TERNARY COMPLEX REMARK 900 RELATED ID: 1JX4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A Y-FAMILY DNA REMARK 900 POLYMERASE IN A TERNARYCOMPLEX WITH DNA REMARK 900 SUBSTRATES AND AN INCOMING NUCLEOTIDE REMARK 900 RELATED ID: 2C22 RELATED DB: PDB REMARK 900 EFFICIENT AND HIGH FIDELITY INCORPORATION OF REMARK 900 DCTP OPPOSITE 7,8-DIHYDRO-8- REMARK 900 OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA REMARK 900 POLYMERASE DPO4 REMARK 900 RELATED ID: 2VA2 RELATED DB: PDB REMARK 900 COMPLEX STRUCTURE OF SULFOLOBUS SOLFATARICUS REMARK 900 DPO4 AND DNA DUPLEX CONTAINING A HYDROPHOBIC REMARK 900 THYMINE ISOSTERE 2,4-DIFLUOROTOLUENE REMARK 900 NUCLEOTIDE IN THE TEMPLATE STRAND REMARK 900 RELATED ID: 1S97 RELATED DB: PDB REMARK 900 DPO4 WITH GT MISMATCH REMARK 900 RELATED ID: 2AGQ RELATED DB: PDB REMARK 900 FIDELITY OF DPO4: EFFECT OF METAL IONS, REMARK 900 NUCLEOTIDESELECTION AND PYROPHOSPHOROLYSIS REMARK 900 RELATED ID: 2ASJ RELATED DB: PDB REMARK 900 OXOG-MODIFIED PREINSERTION BINARY COMPLEX REMARK 900 RELATED ID: 2AGO RELATED DB: PDB REMARK 900 FIDELITY OF DPO4: EFFECT OF METAL IONS, REMARK 900 NUCLEOTIDESELECTION AND PYROPHOSPHOROLYSIS REMARK 900 RELATED ID: 2JEJ RELATED DB: PDB REMARK 900 THE MOLECULAR BASIS OF SELECTIVITY OF REMARK 900 NUCLEOSIDE TRIPHOSPHATE INCORPORATION OPPOSITE REMARK 900 O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS REMARK 900 DNA POLYMERASE IV: STEADY-STATE AND PRE- REMARK 900 STEADY-STATE KINETICS AND X-RAY REMARK 900 CRYSTALLOGRAPHY OF CORRECT AND INCORRECT REMARK 900 PAIRING REMARK 900 RELATED ID: 2ASD RELATED DB: PDB REMARK 900 OXOG-MODIFIED INSERTION TERNARY COMPLEX REMARK 900 RELATED ID: 1JXL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A Y-FAMILY DNA REMARK 900 POLYMERASE IN A TERNARYCOMPLEX WITH DNA REMARK 900 SUBSTRATES AND AN INCOMING NUCLEOTIDE REMARK 900 RELATED ID: 1N48 RELATED DB: PDB REMARK 900 Y-FAMILY DNA POLYMERASE DPO4 IN COMPLEX REMARK 900 WITH DNA CONTAININGABASIC LESION REMARK 900 RELATED ID: 2BQ3 RELATED DB: PDB REMARK 900 DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS REMARK 900 SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL REMARK 900 STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION REMARK 900 AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1 REMARK 900 ,N2-ETHENOGUANINE REMARK 900 RELATED ID: 2J6U RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS REMARK 900 DPO4 DNA POLYMERASE, O6-METHYLGUANINE MODIFIED REMARK 900 DNA, AND DGTP. REMARK 900 RELATED ID: 2UVU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF MUTANT DPO4 DNA REMARK 900 POLYMERASES WITH 8-OXOG CONTAINING DNA REMARK 900 TEMPLATE-PRIMER CONSTRUCTS REMARK 900 RELATED ID: 2AGP RELATED DB: PDB REMARK 900 FIDELITY OF DPO4: EFFECT OF METAL IONS, REMARK 900 NUCLEOTIDESELECTION AND PYROPHOSPHOROLYSIS REMARK 900 RELATED ID: 1S0N RELATED DB: PDB REMARK 900 SNAPSHOTS OF REPLICATION THROUGH AN ABASIC REMARK 900 LESION:STRUCTURAL BASIS FOR BASE SUBSTITUTION REMARK 900 AND FRAMESHIFT REMARK 900 RELATED ID: 2C2R RELATED DB: PDB REMARK 900 EFFICIENT AND HIGH FIDELITY INCORPORATION OF REMARK 900 DCTP OPPOSITE 7,8-DIHYDRO-8- REMARK 900 OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA REMARK 900 POLYMERASE DPO4 REMARK 900 RELATED ID: 2JEF RELATED DB: PDB REMARK 900 THE MOLECULAR BASIS OF SELECTIVITY OF REMARK 900 NUCLEOTIDE TRIPHOSPHATE INCORPORATION OPPOSITE REMARK 900 O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS REMARK 900 DNA POLYMERASE IV: STEADY-STATE AND PRE- REMARK 900 STEADY-STATE AND X-RAY CRYSTALLOGRAPHY OF REMARK 900 CORRECT AND INCORRECT PAIRING REMARK 900 RELATED ID: 1S0O RELATED DB: PDB REMARK 900 SNAPSHOTS OF REPLICATION THROUGH AN ABASIC REMARK 900 LESION:STRUCTURAL BASIS FOR BASE SUBSTITUTION REMARK 900 AND FRAMESHIFT REMARK 900 RELATED ID: 2UVW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF MUTANT DPO4 DNA REMARK 900 POLYMERASES WITH 8-OXOG CONTAINING DNA REMARK 900 TEMPLATE-PRIMER CONSTRUCTS REMARK 900 RELATED ID: 2JEI RELATED DB: PDB REMARK 900 THE MOLECULAR BASIS OF SELECTIVITY OF REMARK 900 NUCLEOSIDE TRIPHOSPHATE INCORPORATION OPPOSITE REMARK 900 O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS REMARK 900 DNA POLYMERASE IV: STEADY-STATE AND PRE- REMARK 900 STEADY-STATE KINETICS AND X-RAY REMARK 900 CRYSTALLOGRAPHY OF CORRECT AND INCORRECT REMARK 900 PAIRING REMARK 900 RELATED ID: 2BQR RELATED DB: PDB REMARK 900 DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS REMARK 900 SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL REMARK 900 STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION REMARK 900 AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1 REMARK 900 ,N2-ETHENOGUANINE REMARK 900 RELATED ID: 2AU0 RELATED DB: PDB REMARK 900 UNMODIFIED PREINSERTION BINARY COMPLEX REMARK 900 RELATED ID: 1S9F RELATED DB: PDB REMARK 900 DPO WITH AT MATCHED REMARK 900 RELATED ID: 2BQU RELATED DB: PDB REMARK 900 DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS REMARK 900 SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL REMARK 900 STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION REMARK 900 AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1 REMARK 900 ,N2-ETHENOGUANINE REMARK 900 RELATED ID: 2C28 RELATED DB: PDB REMARK 900 EFFICIENT AND HIGH FIDELITY INCORPORATION OF REMARK 900 DCTP OPPOSITE 7,8-DIHYDRO-8- REMARK 900 OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA REMARK 900 POLYMERASE DPO4 REMARK 900 RELATED ID: 2V9W RELATED DB: PDB REMARK 900 COMPLEX STRUCTURE OF SULFOLOBUS SOLFATARICUS REMARK 900 DPO4 AND DNA DUPLEX CONTAINING A HYDROPHOBIC REMARK 900 THYMINE ISOSTERE 2,4-DIFLUOROTOLUENE REMARK 900 NUCLEOTIDE IN THE TEMPLATE STRAND REMARK 900 RELATED ID: 2V4R RELATED DB: PDB REMARK 900 NON-PRODUCTIVE COMPLEX OF THE Y-FAMILY DNA REMARK 900 POLYMERASE DPO4 WITH DGTP SKIPPING THE REMARK 900 M1DG ADDUCT TO PAIR WITH THE NEXT TEMPLATE REMARK 900 CYTOSINE REMARK 900 RELATED ID: 2C2E RELATED DB: PDB REMARK 900 EFFICIENT AND HIGH FIDELITY INCORPORATION OF REMARK 900 DCTP OPPOSITE 7,8-DIHYDRO-8- REMARK 900 OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA REMARK 900 POLYMERASE DPO4 REMARK 900 RELATED ID: 1RYR RELATED DB: PDB REMARK 900 REPLICATION OF A CIS-SYN THYMINE DIMER AT REMARK 900 ATOMIC RESOLUTION REMARK 900 RELATED ID: 2UVV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF MUTANT DPO4 DNA REMARK 900 POLYMERASES WITH 8-OXOG CONTAINING DNA REMARK 900 TEMPLATE-PRIMER CONSTRUCTS REMARK 900 RELATED ID: 2C2D RELATED DB: PDB REMARK 900 EFFICIENT AND HIGH FIDELITY INCORPORATION OF REMARK 900 DCTP OPPOSITE 7,8-DIHYDRO-8- REMARK 900 OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA REMARK 900 POLYMERASE DPO4 REMARK 900 RELATED ID: 2V4Q RELATED DB: PDB REMARK 900 POST-INSERTION COMPLEX OF THE Y-FAMILY DNA REMARK 900 POLYMERASE DPO4 WITH M1DG CONTAINING REMARK 900 TEMPLATE DNA REMARK 900 RELATED ID: 2J6S RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS REMARK 900 DPO4 DNA POLYMERASE, O6-METHYLGUANINE MODIFIED REMARK 900 DNA, AND DATP. REMARK 900 RELATED ID: 1S10 RELATED DB: PDB REMARK 900 SNAPSHOTS OF REPLICATION THROUGH AN ABASIC REMARK 900 LESION:STRUCTURAL BASIS FOR BASE SUBSTITUTION REMARK 900 AND FRAMESHIFT REMARK 900 RELATED ID: 2BR0 RELATED DB: PDB REMARK 900 DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS REMARK 900 SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL REMARK 900 STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION REMARK 900 AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1 REMARK 900 ,N2-ETHENOGUANINE REMARK 900 RELATED ID: 2UVR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF MUTANT DPO4 DNA REMARK 900 POLYMERASES WITH 8-OXOG CONTAINING DNA REMARK 900 TEMPLATE-PRIMER CONSTRUCTS REMARK 900 RELATED ID: 2VA3 RELATED DB: PDB REMARK 900 COMPLEX STRUCTURE OF SULFOLOBUS SOLFATARICUS REMARK 900 DPO4 AND DNA DUPLEX CONTAINING A HYDROPHOBIC REMARK 900 THYMINE ISOSTERE 2,4-DIFLUOROTOLUENE REMARK 900 NUCLEOTIDE IN THE TEMPLATE STRAND REMARK 900 RELATED ID: 2V4T RELATED DB: PDB REMARK 900 Y-FAMILY DNA POLYMERASE DPO4 BYPASSING N2- REMARK 900 NAPHTHYL-GUANINE ADDUCT IN ANTI ORIENTATION REMARK 999 REMARK 999 SEQUENCE REMARK 999 ENGINEERED HEXA-HISTIDINE TAG AND LAST 11 RESIDUES ARE REMARK 999 DISORDERED DBREF 2V4S A -5 0 PDB 2V4S 2V4S -5 0 DBREF 2V4S A 1 352 UNP Q97W02 DPO42_SULSO 1 352 DBREF 2V4S P 1 14 PDB 2V4S 2V4S 1 14 DBREF 2V4S T 1 18 PDB 2V4S 2V4S 1 18 SEQRES 1 A 358 HIS HIS HIS HIS HIS HIS MET ILE VAL LEU PHE VAL ASP SEQRES 2 A 358 PHE ASP TYR PHE TYR ALA GLN VAL GLU GLU VAL LEU ASN SEQRES 3 A 358 PRO SER LEU LYS GLY LYS PRO VAL VAL VAL CYS VAL PHE SEQRES 4 A 358 SER GLY ARG PHE GLU ASP SER GLY ALA VAL ALA THR ALA SEQRES 5 A 358 ASN TYR GLU ALA ARG LYS PHE GLY VAL LYS ALA GLY ILE SEQRES 6 A 358 PRO ILE VAL GLU ALA LYS LYS ILE LEU PRO ASN ALA VAL SEQRES 7 A 358 TYR LEU PRO MET ARG LYS GLU VAL TYR GLN GLN VAL SER SEQRES 8 A 358 SER ARG ILE MET ASN LEU LEU ARG GLU TYR SER GLU LYS SEQRES 9 A 358 ILE GLU ILE ALA SER ILE ASP GLU ALA TYR LEU ASP ILE SEQRES 10 A 358 SER ASP LYS VAL ARG ASP TYR ARG GLU ALA TYR ASN LEU SEQRES 11 A 358 GLY LEU GLU ILE LYS ASN LYS ILE LEU GLU LYS GLU LYS SEQRES 12 A 358 ILE THR VAL THR VAL GLY ILE SER LYS ASN LYS VAL PHE SEQRES 13 A 358 ALA LYS ILE ALA ALA ASP MET ALA LYS PRO ASN GLY ILE SEQRES 14 A 358 LYS VAL ILE ASP ASP GLU GLU VAL LYS ARG LEU ILE ARG SEQRES 15 A 358 GLU LEU ASP ILE ALA ASP VAL PRO GLY ILE GLY ASN ILE SEQRES 16 A 358 THR ALA GLU LYS LEU LYS LYS LEU GLY ILE ASN LYS LEU SEQRES 17 A 358 VAL ASP THR LEU SER ILE GLU PHE ASP LYS LEU LYS GLY SEQRES 18 A 358 MET ILE GLY GLU ALA LYS ALA LYS TYR LEU ILE SER LEU SEQRES 19 A 358 ALA ARG ASP GLU TYR ASN GLU PRO ILE ARG THR ARG VAL SEQRES 20 A 358 ARG LYS SER ILE GLY ARG ILE VAL THR MET LYS ARG ASN SEQRES 21 A 358 SER ARG ASN LEU GLU GLU ILE LYS PRO TYR LEU PHE ARG SEQRES 22 A 358 ALA ILE GLU GLU SER TYR TYR LYS LEU ASP LYS ARG ILE SEQRES 23 A 358 PRO LYS ALA ILE HIS VAL VAL ALA VAL THR GLU ASP LEU SEQRES 24 A 358 ASP ILE VAL SER ARG GLY ARG THR PHE PRO HIS GLY ILE SEQRES 25 A 358 SER LYS GLU THR ALA TYR SER GLU SER VAL LYS LEU LEU SEQRES 26 A 358 GLN LYS ILE LEU GLU GLU ASP GLU ARG LYS ILE ARG ARG SEQRES 27 A 358 ILE GLY VAL ARG PHE SER LYS PHE ILE GLU ALA ILE GLY SEQRES 28 A 358 LEU ASP LYS PHE PHE ASP THR SEQRES 1 P 14 DG DG DG DG DG DA DA DG DG DA DT DT DC SEQRES 2 P 14 DOC SEQRES 1 T 18 DT DC DA DC N2G DG DA DA DT DC DC DT DT SEQRES 2 T 18 DC DC DC DC DC MODRES 2V4S N2G T 5 DG N2-NAPHTHALENE DEOXYGUANOSINE MODRES 2V4S DOC P 14 DC 2,3-DIDEOXYCYTOSINE-MONOPHOSPHATE HET DGT A 594 31 HET MG A1000 1 HET MG A1001 1 HET MG A1002 1 HET MG A1003 1 HET DOC P 14 18 HET N2G T 5 33 HETNAM DGT 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM N2G 2'-DEOXY-N-(NAPHTHALEN-1-YLMETHYL)GUANOSINE HETNAM 2 N2G 5'-(DIHYDROGEN PHOSPHATE) HETNAM MG MAGNESIUM ION FORMUL 4 DGT C10 H16 N5 O13 P3 FORMUL 5 DOC C9 H14 N3 O6 P FORMUL 6 N2G C21 H22 N5 O7 P1 FORMUL 7 MG 4(MG 2+) FORMUL 8 HOH *79(H2 O1) HELIX 1 1 TYR A 10 LEU A 19 1 10 HELIX 2 2 ASN A 47 LYS A 52 1 6 HELIX 3 3 PRO A 60 LEU A 68 1 9 HELIX 4 4 ARG A 77 ARG A 93 1 17 HELIX 5 5 SER A 112 LYS A 114 5 3 HELIX 6 6 ASP A 117 GLU A 134 1 18 HELIX 7 7 ASN A 147 ALA A 158 1 12 HELIX 8 8 ASP A 167 GLU A 177 1 11 HELIX 9 9 GLY A 187 LEU A 197 1 11 HELIX 10 10 LYS A 201 SER A 207 1 7 HELIX 11 11 GLU A 209 GLY A 218 1 10 HELIX 12 12 GLY A 218 ARG A 230 1 13 HELIX 13 13 ASN A 257 ASP A 277 1 21 HELIX 14 14 SER A 307 ASP A 326 1 20 SHEET 1 AA 5 ILE A 99 GLU A 100 0 SHEET 2 AA 5 GLU A 106 ASP A 110 -1 O TYR A 108 N GLU A 100 SHEET 3 AA 5 VAL A 3 PHE A 8 -1 O LEU A 4 N LEU A 109 SHEET 4 AA 5 VAL A 140 SER A 145 -1 O THR A 141 N ASP A 7 SHEET 5 AA 5 GLY A 162 VAL A 165 1 O GLY A 162 N VAL A 142 SHEET 1 AB 3 ALA A 42 ALA A 46 0 SHEET 2 AB 3 VAL A 28 VAL A 32 -1 O VAL A 30 N ALA A 44 SHEET 3 AB 3 VAL A 72 PRO A 75 1 O VAL A 72 N VAL A 29 SHEET 1 AC 4 SER A 244 SER A 255 0 SHEET 2 AC 4 ILE A 330 SER A 338 -1 O ILE A 330 N SER A 255 SHEET 3 AC 4 ALA A 283 THR A 290 -1 N ALA A 283 O SER A 338 SHEET 4 AC 4 ILE A 295 THR A 301 -1 O VAL A 296 N ALA A 288 LINK MG MG A1000 OD2 ASP A 7 1555 1555 2.73 LINK MG MG A1001 O2A DGT A 594 1555 1555 2.24 LINK MG MG A1001 OD1 ASP A 105 1555 1555 2.86 LINK MG MG A1001 O PHE A 8 1555 1555 2.29 LINK MG MG A1001 O1B DGT A 594 1555 1555 2.45 LINK MG MG A1001 OD1 ASP A 7 1555 1555 2.23 LINK MG MG A1002 O HOH A2040 1555 1555 2.74 LINK MG MG A1002 O HOH A2038 1555 1555 2.40 LINK MG MG A1002 O ILE A 186 1555 1555 2.88 LINK MG MG A1002 O ALA A 181 1555 1555 2.49 LINK MG MG A1003 OP2 DA P 10 1555 1555 2.89 LINK MG MG A1003 OD2 ASP A 294 1555 1555 2.77 LINK O3' DC P 13 P DOC P 14 1555 1555 1.60 LINK O3' DC T 4 P N2G T 5 1555 1555 1.61 LINK O3' N2G T 5 P DG T 6 1555 1555 1.60 CISPEP 1 LYS A 159 PRO A 160 0 -0.15 CRYST1 95.040 103.910 52.320 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010522 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009624 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019113 0.00000