data_2V53 # _entry.id 2V53 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2V53 pdb_00002v53 10.2210/pdb2v53/pdb PDBE EBI-37708 ? ? WWPDB D_1290037708 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1NUB unspecified 'HELIX C DELETION MUTANT OF BM-40 FS-EC DOMAIN PAIR' PDB 1BMO unspecified 'BM-40, FS/EC DOMAIN PAIR' PDB 1SRA unspecified 'STRUCTURE OF A NOVEL EXTRACELLULAR CA2+-BINDING MODULE IN BM-40(SLASH)SPARC(SLASH)OSTEONECTIN' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2V53 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2008-10-01 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hohenester, E.' 1 'Sasaki, T.' 2 'Giudici, C.' 3 'Farndale, R.W.' 4 'Bachinger, H.P.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structural Basis of Sequence-Specific Collagen Recognition by Sparc.' Proc.Natl.Acad.Sci.USA 105 18273 ? 2008 PNASA6 US 0027-8424 0040 ? 19011090 10.1073/PNAS.0808452105 1 ;Crystal Structure and Mapping by Site-Directed Mutagenesis of the Collagen-Binding Epitope of an Activated Form of Bm-40,Sparc,Osteonectin ; 'Embo J.' 17 1625 ? 1998 EMJODG UK 0261-4189 0897 ? 9501084 10.1093/EMBOJ/17.6.1625 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hohenester, E.' 1 ? primary 'Sasaki, T.' 2 ? primary 'Giudici, C.' 3 ? primary 'Farndale, R.W.' 4 ? primary 'Bachinger, H.P.' 5 ? 1 'Sasaki, T.' 6 ? 1 'Hohenester, E.' 7 ? 1 'Gohring, W.' 8 ? 1 'Timpl, R.' 9 ? # _cell.entry_id 2V53 _cell.length_a 89.790 _cell.length_b 89.790 _cell.length_c 127.100 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2V53 _symmetry.space_group_name_H-M 'P 42 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man SPARC 26633.367 1 ? ? 'FS AND EC DOMAINS, RESIDUES 70-212,221-303' ? 2 polymer syn 'COLLAGEN ALPHA-1(III) CHAIN' 3067.350 3 ? ? 'RESIDUES 564-584' ? 3 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 1 ? ? ? ? 4 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 5 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'SECRETED PROTEIN ACIDIC AND RICH IN CYSTEINE, OSTEONECTIN, ON, BASEMENT-MEMBRANE PROTEIN 40, BM-40' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;APLANPCQNHHCKHGKVCELDENNTPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDY IGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDEDNNLLTEKQKLRVKKIHENEKRLEAGDHPEKNYNMYIFPVHW QFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQKDIDKDLVI ; ;APLANPCQNHHCKHGKVCELDENNTPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDY IGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDEDNNLLTEKQKLRVKKIHENEKRLEAGDHPEKNYNMYIFPVHW QFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQKDIDKDLVI ; A ? 2 'polypeptide(L)' no yes 'GP(HYP)GP(HYP)GP(HYP)GPSGPRGQ(HYP)GVMGF(HYP)GPKGP(HYP)GA(HYP)' GPPGPPGPPGPSGPRGQPGVMGFPGPKGPPGAP B,C,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 PRO n 1 3 LEU n 1 4 ALA n 1 5 ASN n 1 6 PRO n 1 7 CYS n 1 8 GLN n 1 9 ASN n 1 10 HIS n 1 11 HIS n 1 12 CYS n 1 13 LYS n 1 14 HIS n 1 15 GLY n 1 16 LYS n 1 17 VAL n 1 18 CYS n 1 19 GLU n 1 20 LEU n 1 21 ASP n 1 22 GLU n 1 23 ASN n 1 24 ASN n 1 25 THR n 1 26 PRO n 1 27 MET n 1 28 CYS n 1 29 VAL n 1 30 CYS n 1 31 GLN n 1 32 ASP n 1 33 PRO n 1 34 THR n 1 35 SER n 1 36 CYS n 1 37 PRO n 1 38 ALA n 1 39 PRO n 1 40 ILE n 1 41 GLY n 1 42 GLU n 1 43 PHE n 1 44 GLU n 1 45 LYS n 1 46 VAL n 1 47 CYS n 1 48 SER n 1 49 ASN n 1 50 ASP n 1 51 ASN n 1 52 LYS n 1 53 THR n 1 54 PHE n 1 55 ASP n 1 56 SER n 1 57 SER n 1 58 CYS n 1 59 HIS n 1 60 PHE n 1 61 PHE n 1 62 ALA n 1 63 THR n 1 64 LYS n 1 65 CYS n 1 66 THR n 1 67 LEU n 1 68 GLU n 1 69 GLY n 1 70 THR n 1 71 LYS n 1 72 LYS n 1 73 GLY n 1 74 HIS n 1 75 LYS n 1 76 LEU n 1 77 HIS n 1 78 LEU n 1 79 ASP n 1 80 TYR n 1 81 ILE n 1 82 GLY n 1 83 PRO n 1 84 CYS n 1 85 LYS n 1 86 TYR n 1 87 ILE n 1 88 PRO n 1 89 PRO n 1 90 CYS n 1 91 LEU n 1 92 ASP n 1 93 SER n 1 94 GLU n 1 95 LEU n 1 96 THR n 1 97 GLU n 1 98 PHE n 1 99 PRO n 1 100 LEU n 1 101 ARG n 1 102 MET n 1 103 ARG n 1 104 ASP n 1 105 TRP n 1 106 LEU n 1 107 LYS n 1 108 ASN n 1 109 VAL n 1 110 LEU n 1 111 VAL n 1 112 THR n 1 113 LEU n 1 114 TYR n 1 115 GLU n 1 116 ARG n 1 117 ASP n 1 118 GLU n 1 119 ASP n 1 120 ASN n 1 121 ASN n 1 122 LEU n 1 123 LEU n 1 124 THR n 1 125 GLU n 1 126 LYS n 1 127 GLN n 1 128 LYS n 1 129 LEU n 1 130 ARG n 1 131 VAL n 1 132 LYS n 1 133 LYS n 1 134 ILE n 1 135 HIS n 1 136 GLU n 1 137 ASN n 1 138 GLU n 1 139 LYS n 1 140 ARG n 1 141 LEU n 1 142 GLU n 1 143 ALA n 1 144 GLY n 1 145 ASP n 1 146 HIS n 1 147 PRO n 1 148 GLU n 1 149 LYS n 1 150 ASN n 1 151 TYR n 1 152 ASN n 1 153 MET n 1 154 TYR n 1 155 ILE n 1 156 PHE n 1 157 PRO n 1 158 VAL n 1 159 HIS n 1 160 TRP n 1 161 GLN n 1 162 PHE n 1 163 GLY n 1 164 GLN n 1 165 LEU n 1 166 ASP n 1 167 GLN n 1 168 HIS n 1 169 PRO n 1 170 ILE n 1 171 ASP n 1 172 GLY n 1 173 TYR n 1 174 LEU n 1 175 SER n 1 176 HIS n 1 177 THR n 1 178 GLU n 1 179 LEU n 1 180 ALA n 1 181 PRO n 1 182 LEU n 1 183 ARG n 1 184 ALA n 1 185 PRO n 1 186 LEU n 1 187 ILE n 1 188 PRO n 1 189 MET n 1 190 GLU n 1 191 HIS n 1 192 CYS n 1 193 THR n 1 194 THR n 1 195 ARG n 1 196 PHE n 1 197 PHE n 1 198 GLU n 1 199 THR n 1 200 CYS n 1 201 ASP n 1 202 LEU n 1 203 ASP n 1 204 ASN n 1 205 ASP n 1 206 LYS n 1 207 TYR n 1 208 ILE n 1 209 ALA n 1 210 LEU n 1 211 ASP n 1 212 GLU n 1 213 TRP n 1 214 ALA n 1 215 GLY n 1 216 CYS n 1 217 PHE n 1 218 GLY n 1 219 ILE n 1 220 LYS n 1 221 GLN n 1 222 LYS n 1 223 ASP n 1 224 ILE n 1 225 ASP n 1 226 LYS n 1 227 ASP n 1 228 LEU n 1 229 VAL n 1 230 ILE n 2 1 GLY n 2 2 PRO n 2 3 HYP n 2 4 GLY n 2 5 PRO n 2 6 HYP n 2 7 GLY n 2 8 PRO n 2 9 HYP n 2 10 GLY n 2 11 PRO n 2 12 SER n 2 13 GLY n 2 14 PRO n 2 15 ARG n 2 16 GLY n 2 17 GLN n 2 18 HYP n 2 19 GLY n 2 20 VAL n 2 21 MET n 2 22 GLY n 2 23 PHE n 2 24 HYP n 2 25 GLY n 2 26 PRO n 2 27 LYS n 2 28 GLY n 2 29 PRO n 2 30 HYP n 2 31 GLY n 2 32 ALA n 2 33 HYP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line 293-EBNA _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector PCEP-PU _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'HOMO SAPIENS' _pdbx_entity_src_syn.organism_common_name HUMAN _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2V53 1 ? ? 2V53 ? 2 UNP SPRC_HUMAN 1 ? ? P09486 ? 3 PDB 2V53 2 ? ? 2V53 ? 4 UNP CO3A1_HUMAN 2 ? ? P02461 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2V53 A 1 ? 4 ? 2V53 49 ? 52 ? 49 52 2 2 2V53 A 5 ? 147 ? P09486 70 ? 212 ? 53 195 3 2 2V53 A 148 ? 230 ? P09486 221 ? 303 ? 204 286 4 3 2V53 B 1 ? 6 ? 2V53 1 ? 6 ? 1 6 5 4 2V53 B 7 ? 27 ? P02461 564 ? 584 ? 7 27 6 3 2V53 B 28 ? 33 ? 2V53 28 ? 33 ? 28 33 7 3 2V53 C 1 ? 6 ? 2V53 1 ? 6 ? 1 6 8 4 2V53 C 7 ? 27 ? P02461 564 ? 584 ? 7 27 9 3 2V53 C 28 ? 33 ? 2V53 28 ? 33 ? 28 33 10 3 2V53 D 1 ? 6 ? 2V53 1 ? 6 ? 1 6 11 4 2V53 D 7 ? 27 ? P02461 564 ? 584 ? 7 27 12 3 2V53 D 28 ? 33 ? 2V53 28 ? 33 ? 28 33 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HYP 'L-peptide linking' n 4-HYDROXYPROLINE HYDROXYPROLINE 'C5 H9 N O3' 131.130 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2V53 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.98 _exptl_crystal.density_percent_sol 68.84 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 5.5' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2007-10-24 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97976 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SRS BEAMLINE PX10.1' _diffrn_source.pdbx_synchrotron_site SRS _diffrn_source.pdbx_synchrotron_beamline PX10.1 _diffrn_source.pdbx_wavelength 0.97976 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2V53 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.00 _reflns.d_resolution_high 3.20 _reflns.number_obs 9046 _reflns.number_all ? _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.50 _reflns.B_iso_Wilson_estimate 74.08 _reflns.pdbx_redundancy 8.7 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 3.20 _reflns_shell.d_res_low 3.37 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.27 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 7.40 _reflns_shell.pdbx_redundancy 8.3 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2V53 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 9019 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.37 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.842 _refine.ls_d_res_high 3.200 _refine.ls_percent_reflns_obs 99.93 _refine.ls_R_factor_obs 0.2609 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2536 _refine.ls_R_factor_R_free 0.3202 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.53 _refine.ls_number_reflns_R_free 950 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 87.32 _refine.aniso_B[1][1] 2.4895 _refine.aniso_B[2][2] 2.4895 _refine.aniso_B[3][3] -10.7831 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.253 _refine.solvent_model_param_bsol 26.822 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1NUB' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.58 _refine.pdbx_overall_phase_error 32.44 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2266 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 34 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2300 _refine_hist.d_res_high 3.200 _refine_hist.d_res_low 19.842 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.00 ? ? 2392 'X-RAY DIFFRACTION' ? f_angle_d 1.41 ? ? 3275 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 23.50 ? ? 859 'X-RAY DIFFRACTION' ? f_chiral_restr 0.07 ? ? 355 'X-RAY DIFFRACTION' ? f_plane_restr 0.00 ? ? 433 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 3.2001 3.3681 1134 0.3094 100.00 0.4058 . . 112 . . 'X-RAY DIFFRACTION' . 3.3681 3.5779 1111 0.2757 100.00 0.3842 . . 137 . . 'X-RAY DIFFRACTION' . 3.5779 3.8523 1151 0.2842 100.00 0.3356 . . 130 . . 'X-RAY DIFFRACTION' . 3.8523 4.2366 1146 0.2566 100.00 0.3092 . . 133 . . 'X-RAY DIFFRACTION' . 4.2366 4.8418 1132 0.2187 100.00 0.3030 . . 142 . . 'X-RAY DIFFRACTION' . 4.8418 6.0711 1159 0.2424 100.00 0.3371 . . 146 . . 'X-RAY DIFFRACTION' . 6.0711 19.8422 1236 0.2229 100.00 0.2694 . . 150 . . # _struct.entry_id 2V53 _struct.title 'Crystal structure of a SPARC-collagen complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2V53 _struct_keywords.pdbx_keywords 'CELL ADHESION' _struct_keywords.text ;GLYCOSYLATED PROTEIN, CELL ADHESION, GLYCOPROTEIN, IONIC CHANNEL, ION TRANSPORT, COPPER, CALCIUM, SECRETED, COLLAGEN, TRANSPORT, BASEMENT MEMBRANE, EXTRACELLULAR MATRIX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 32 ? CYS A 36 ? ASP A 80 CYS A 84 5 ? 5 HELX_P HELX_P2 2 SER A 56 ? THR A 66 ? SER A 104 THR A 114 1 ? 11 HELX_P HELX_P3 3 LEU A 91 ? GLU A 97 ? LEU A 139 GLU A 145 1 ? 7 HELX_P HELX_P4 4 PHE A 98 ? GLU A 115 ? PHE A 146 GLU A 163 1 ? 18 HELX_P HELX_P5 5 THR A 124 ? GLU A 136 ? THR A 172 GLU A 184 1 ? 13 HELX_P HELX_P6 6 TYR A 154 ? ASP A 166 ? TYR A 210 ASP A 222 1 ? 13 HELX_P HELX_P7 7 SER A 175 ? ALA A 184 ? SER A 231 ALA A 240 1 ? 10 HELX_P HELX_P8 8 LEU A 186 ? GLU A 190 ? LEU A 242 GLU A 246 5 ? 5 HELX_P HELX_P9 9 HIS A 191 ? THR A 199 ? HIS A 247 THR A 255 1 ? 9 HELX_P HELX_P10 10 LEU A 210 ? PHE A 217 ? LEU A 266 PHE A 273 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 7 SG ? ? ? 1_555 A CYS 18 SG ? ? A CYS 55 A CYS 66 1_555 ? ? ? ? ? ? ? 2.037 ? ? disulf2 disulf ? ? A CYS 12 SG ? ? ? 1_555 A CYS 28 SG ? ? A CYS 60 A CYS 76 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf3 disulf ? ? A CYS 30 SG ? ? ? 1_555 A CYS 65 SG ? ? A CYS 78 A CYS 113 1_555 ? ? ? ? ? ? ? 2.044 ? ? disulf4 disulf ? ? A CYS 36 SG ? ? ? 1_555 A CYS 58 SG ? ? A CYS 84 A CYS 106 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf5 disulf ? ? A CYS 47 SG ? ? ? 1_555 A CYS 84 SG ? ? A CYS 95 A CYS 132 1_555 ? ? ? ? ? ? ? 2.019 ? ? disulf6 disulf ? ? A CYS 90 SG ? ? ? 1_555 A CYS 192 SG ? ? A CYS 138 A CYS 248 1_555 ? ? ? ? ? ? ? 2.035 ? ? disulf7 disulf ? ? A CYS 200 SG ? ? ? 1_555 A CYS 216 SG ? ? A CYS 256 A CYS 272 1_555 ? ? ? ? ? ? ? 2.031 ? ? covale1 covale one ? A ASN 51 ND2 ? ? ? 1_555 E NAG . C1 ? ? A ASN 99 E NAG 1 1_555 ? ? ? ? ? ? ? 1.442 ? N-Glycosylation covale2 covale both ? B PRO 2 C ? ? ? 1_555 B HYP 3 N ? ? B PRO 2 B HYP 3 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale3 covale both ? B HYP 3 C ? ? ? 1_555 B GLY 4 N ? ? B HYP 3 B GLY 4 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale4 covale both ? B PRO 5 C ? ? ? 1_555 B HYP 6 N ? ? B PRO 5 B HYP 6 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale5 covale both ? B HYP 6 C ? ? ? 1_555 B GLY 7 N ? ? B HYP 6 B GLY 7 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale6 covale both ? B PRO 8 C ? ? ? 1_555 B HYP 9 N ? ? B PRO 8 B HYP 9 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale7 covale both ? B HYP 9 C ? ? ? 1_555 B GLY 10 N ? ? B HYP 9 B GLY 10 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale8 covale both ? B GLN 17 C ? ? ? 1_555 B HYP 18 N ? ? B GLN 17 B HYP 18 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale9 covale both ? B HYP 18 C ? ? ? 1_555 B GLY 19 N ? ? B HYP 18 B GLY 19 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale10 covale both ? B PHE 23 C ? ? ? 1_555 B HYP 24 N ? ? B PHE 23 B HYP 24 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale11 covale both ? B HYP 24 C ? ? ? 1_555 B GLY 25 N ? ? B HYP 24 B GLY 25 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale12 covale both ? B PRO 29 C ? ? ? 1_555 B HYP 30 N ? ? B PRO 29 B HYP 30 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale13 covale both ? B HYP 30 C ? ? ? 1_555 B GLY 31 N ? ? B HYP 30 B GLY 31 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale14 covale both ? B ALA 32 C ? ? ? 1_555 B HYP 33 N ? ? B ALA 32 B HYP 33 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale15 covale both ? C PRO 2 C ? ? ? 1_555 C HYP 3 N ? ? C PRO 2 C HYP 3 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale16 covale both ? C HYP 3 C ? ? ? 1_555 C GLY 4 N ? ? C HYP 3 C GLY 4 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale17 covale both ? C PRO 5 C ? ? ? 1_555 C HYP 6 N ? ? C PRO 5 C HYP 6 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale18 covale both ? C HYP 6 C ? ? ? 1_555 C GLY 7 N ? ? C HYP 6 C GLY 7 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale19 covale both ? C PRO 8 C ? ? ? 1_555 C HYP 9 N ? ? C PRO 8 C HYP 9 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale20 covale both ? C HYP 9 C ? ? ? 1_555 C GLY 10 N ? ? C HYP 9 C GLY 10 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale21 covale both ? C GLN 17 C ? ? ? 1_555 C HYP 18 N ? ? C GLN 17 C HYP 18 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale22 covale both ? C HYP 18 C ? ? ? 1_555 C GLY 19 N ? ? C HYP 18 C GLY 19 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale23 covale both ? C PHE 23 C ? ? ? 1_555 C HYP 24 N ? ? C PHE 23 C HYP 24 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale24 covale both ? C HYP 24 C ? ? ? 1_555 C GLY 25 N ? ? C HYP 24 C GLY 25 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale25 covale both ? C PRO 29 C ? ? ? 1_555 C HYP 30 N ? ? C PRO 29 C HYP 30 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale26 covale both ? C HYP 30 C ? ? ? 1_555 C GLY 31 N ? ? C HYP 30 C GLY 31 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale27 covale both ? C ALA 32 C ? ? ? 1_555 C HYP 33 N ? ? C ALA 32 C HYP 33 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale28 covale both ? D PRO 2 C ? ? ? 1_555 D HYP 3 N ? ? D PRO 2 D HYP 3 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale29 covale both ? D HYP 3 C ? ? ? 1_555 D GLY 4 N ? ? D HYP 3 D GLY 4 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale30 covale both ? D PRO 5 C ? ? ? 1_555 D HYP 6 N ? ? D PRO 5 D HYP 6 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale31 covale both ? D HYP 6 C ? ? ? 1_555 D GLY 7 N ? ? D HYP 6 D GLY 7 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale32 covale both ? D PRO 8 C ? ? ? 1_555 D HYP 9 N ? ? D PRO 8 D HYP 9 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale33 covale both ? D HYP 9 C ? ? ? 1_555 D GLY 10 N ? ? D HYP 9 D GLY 10 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale34 covale both ? D GLN 17 C ? ? ? 1_555 D HYP 18 N ? ? D GLN 17 D HYP 18 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale35 covale both ? D HYP 18 C ? ? ? 1_555 D GLY 19 N ? ? D HYP 18 D GLY 19 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale36 covale both ? D PHE 23 C ? ? ? 1_555 D HYP 24 N ? ? D PHE 23 D HYP 24 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale37 covale both ? D HYP 24 C ? ? ? 1_555 D GLY 25 N ? ? D HYP 24 D GLY 25 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale38 covale both ? D PRO 29 C ? ? ? 1_555 D HYP 30 N ? ? D PRO 29 D HYP 30 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale39 covale both ? D HYP 30 C ? ? ? 1_555 D GLY 31 N ? ? D HYP 30 D GLY 31 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale40 covale both ? D ALA 32 C ? ? ? 1_555 D HYP 33 N ? ? D ALA 32 D HYP 33 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale41 covale both ? E NAG . O4 ? ? ? 1_555 E NAG . C1 ? ? E NAG 1 E NAG 2 1_555 ? ? ? ? ? ? ? 1.444 ? ? metalc1 metalc ? ? A ASP 166 OD1 ? ? ? 1_555 F CA . CA ? ? A ASP 222 A CA 301 1_555 ? ? ? ? ? ? ? 2.577 ? ? metalc2 metalc ? ? A PRO 169 O ? ? ? 1_555 F CA . CA ? ? A PRO 225 A CA 301 1_555 ? ? ? ? ? ? ? 2.586 ? ? metalc3 metalc ? ? A ASP 171 OD2 ? ? ? 1_555 F CA . CA ? ? A ASP 227 A CA 301 1_555 ? ? ? ? ? ? ? 2.634 ? ? metalc4 metalc ? ? A TYR 173 O ? ? ? 1_555 F CA . CA ? ? A TYR 229 A CA 301 1_555 ? ? ? ? ? ? ? 2.688 ? ? metalc5 metalc ? ? A GLU 178 OE1 ? ? ? 1_555 F CA . CA ? ? A GLU 234 A CA 301 1_555 ? ? ? ? ? ? ? 2.616 ? ? metalc6 metalc ? ? A GLU 178 OE2 ? ? ? 1_555 F CA . CA ? ? A GLU 234 A CA 301 1_555 ? ? ? ? ? ? ? 2.753 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id HIS _struct_mon_prot_cis.label_seq_id 168 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id HIS _struct_mon_prot_cis.auth_seq_id 224 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 169 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 225 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -1.95 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? AB ? 2 ? AC ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AB 1 2 ? anti-parallel AC 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LYS A 16 ? LEU A 20 ? LYS A 64 LEU A 68 AA 2 PRO A 26 ? CYS A 30 ? PRO A 74 CYS A 78 AB 1 VAL A 46 ? CYS A 47 ? VAL A 94 CYS A 95 AB 2 TYR A 80 ? ILE A 81 ? TYR A 128 ILE A 129 AC 1 TYR A 173 ? LEU A 174 ? TYR A 229 LEU A 230 AC 2 ILE A 208 ? ALA A 209 ? ILE A 264 ALA A 265 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N GLU A 19 ? N GLU A 67 O MET A 27 ? O MET A 75 AB 1 2 N CYS A 47 ? N CYS A 95 O TYR A 80 ? O TYR A 128 AC 1 2 N LEU A 174 ? N LEU A 230 O ILE A 208 ? O ILE A 264 # _database_PDB_matrix.entry_id 2V53 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2V53 _atom_sites.fract_transf_matrix[1][1] 0.011137 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011137 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007868 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 49 ? ? ? A . n A 1 2 PRO 2 50 ? ? ? A . n A 1 3 LEU 3 51 ? ? ? A . n A 1 4 ALA 4 52 ? ? ? A . n A 1 5 ASN 5 53 ? ? ? A . n A 1 6 PRO 6 54 54 PRO PRO A . n A 1 7 CYS 7 55 55 CYS CYS A . n A 1 8 GLN 8 56 56 GLN GLN A . n A 1 9 ASN 9 57 57 ASN ASN A . n A 1 10 HIS 10 58 58 HIS HIS A . n A 1 11 HIS 11 59 59 HIS HIS A . n A 1 12 CYS 12 60 60 CYS CYS A . n A 1 13 LYS 13 61 61 LYS LYS A . n A 1 14 HIS 14 62 62 HIS HIS A . n A 1 15 GLY 15 63 63 GLY GLY A . n A 1 16 LYS 16 64 64 LYS LYS A . n A 1 17 VAL 17 65 65 VAL VAL A . n A 1 18 CYS 18 66 66 CYS CYS A . n A 1 19 GLU 19 67 67 GLU GLU A . n A 1 20 LEU 20 68 68 LEU LEU A . n A 1 21 ASP 21 69 69 ASP ASP A . n A 1 22 GLU 22 70 70 GLU GLU A . n A 1 23 ASN 23 71 71 ASN ASN A . n A 1 24 ASN 24 72 72 ASN ASN A . n A 1 25 THR 25 73 73 THR THR A . n A 1 26 PRO 26 74 74 PRO PRO A . n A 1 27 MET 27 75 75 MET MET A . n A 1 28 CYS 28 76 76 CYS CYS A . n A 1 29 VAL 29 77 77 VAL VAL A . n A 1 30 CYS 30 78 78 CYS CYS A . n A 1 31 GLN 31 79 79 GLN GLN A . n A 1 32 ASP 32 80 80 ASP ASP A . n A 1 33 PRO 33 81 81 PRO PRO A . n A 1 34 THR 34 82 82 THR THR A . n A 1 35 SER 35 83 83 SER SER A . n A 1 36 CYS 36 84 84 CYS CYS A . n A 1 37 PRO 37 85 85 PRO PRO A . n A 1 38 ALA 38 86 86 ALA ALA A . n A 1 39 PRO 39 87 87 PRO PRO A . n A 1 40 ILE 40 88 88 ILE ILE A . n A 1 41 GLY 41 89 89 GLY GLY A . n A 1 42 GLU 42 90 90 GLU GLU A . n A 1 43 PHE 43 91 91 PHE PHE A . n A 1 44 GLU 44 92 92 GLU GLU A . n A 1 45 LYS 45 93 93 LYS LYS A . n A 1 46 VAL 46 94 94 VAL VAL A . n A 1 47 CYS 47 95 95 CYS CYS A . n A 1 48 SER 48 96 96 SER SER A . n A 1 49 ASN 49 97 97 ASN ASN A . n A 1 50 ASP 50 98 98 ASP ASP A . n A 1 51 ASN 51 99 99 ASN ASN A . n A 1 52 LYS 52 100 100 LYS LYS A . n A 1 53 THR 53 101 101 THR THR A . n A 1 54 PHE 54 102 102 PHE PHE A . n A 1 55 ASP 55 103 103 ASP ASP A . n A 1 56 SER 56 104 104 SER SER A . n A 1 57 SER 57 105 105 SER SER A . n A 1 58 CYS 58 106 106 CYS CYS A . n A 1 59 HIS 59 107 107 HIS HIS A . n A 1 60 PHE 60 108 108 PHE PHE A . n A 1 61 PHE 61 109 109 PHE PHE A . n A 1 62 ALA 62 110 110 ALA ALA A . n A 1 63 THR 63 111 111 THR THR A . n A 1 64 LYS 64 112 112 LYS LYS A . n A 1 65 CYS 65 113 113 CYS CYS A . n A 1 66 THR 66 114 114 THR THR A . n A 1 67 LEU 67 115 115 LEU LEU A . n A 1 68 GLU 68 116 116 GLU GLU A . n A 1 69 GLY 69 117 117 GLY GLY A . n A 1 70 THR 70 118 118 THR THR A . n A 1 71 LYS 71 119 119 LYS LYS A . n A 1 72 LYS 72 120 120 LYS LYS A . n A 1 73 GLY 73 121 121 GLY GLY A . n A 1 74 HIS 74 122 122 HIS HIS A . n A 1 75 LYS 75 123 123 LYS LYS A . n A 1 76 LEU 76 124 124 LEU LEU A . n A 1 77 HIS 77 125 125 HIS HIS A . n A 1 78 LEU 78 126 126 LEU LEU A . n A 1 79 ASP 79 127 127 ASP ASP A . n A 1 80 TYR 80 128 128 TYR TYR A . n A 1 81 ILE 81 129 129 ILE ILE A . n A 1 82 GLY 82 130 130 GLY GLY A . n A 1 83 PRO 83 131 131 PRO PRO A . n A 1 84 CYS 84 132 132 CYS CYS A . n A 1 85 LYS 85 133 133 LYS LYS A . n A 1 86 TYR 86 134 134 TYR TYR A . n A 1 87 ILE 87 135 135 ILE ILE A . n A 1 88 PRO 88 136 136 PRO PRO A . n A 1 89 PRO 89 137 137 PRO PRO A . n A 1 90 CYS 90 138 138 CYS CYS A . n A 1 91 LEU 91 139 139 LEU LEU A . n A 1 92 ASP 92 140 140 ASP ASP A . n A 1 93 SER 93 141 141 SER SER A . n A 1 94 GLU 94 142 142 GLU GLU A . n A 1 95 LEU 95 143 143 LEU LEU A . n A 1 96 THR 96 144 144 THR THR A . n A 1 97 GLU 97 145 145 GLU GLU A . n A 1 98 PHE 98 146 146 PHE PHE A . n A 1 99 PRO 99 147 147 PRO PRO A . n A 1 100 LEU 100 148 148 LEU LEU A . n A 1 101 ARG 101 149 149 ARG ARG A . n A 1 102 MET 102 150 150 MET MET A . n A 1 103 ARG 103 151 151 ARG ARG A . n A 1 104 ASP 104 152 152 ASP ASP A . n A 1 105 TRP 105 153 153 TRP TRP A . n A 1 106 LEU 106 154 154 LEU LEU A . n A 1 107 LYS 107 155 155 LYS LYS A . n A 1 108 ASN 108 156 156 ASN ASN A . n A 1 109 VAL 109 157 157 VAL VAL A . n A 1 110 LEU 110 158 158 LEU LEU A . n A 1 111 VAL 111 159 159 VAL VAL A . n A 1 112 THR 112 160 160 THR THR A . n A 1 113 LEU 113 161 161 LEU LEU A . n A 1 114 TYR 114 162 162 TYR TYR A . n A 1 115 GLU 115 163 163 GLU GLU A . n A 1 116 ARG 116 164 164 ARG ARG A . n A 1 117 ASP 117 165 165 ASP ASP A . n A 1 118 GLU 118 166 166 GLU GLU A . n A 1 119 ASP 119 167 167 ASP ASP A . n A 1 120 ASN 120 168 168 ASN ASN A . n A 1 121 ASN 121 169 169 ASN ASN A . n A 1 122 LEU 122 170 170 LEU LEU A . n A 1 123 LEU 123 171 171 LEU LEU A . n A 1 124 THR 124 172 172 THR THR A . n A 1 125 GLU 125 173 173 GLU GLU A . n A 1 126 LYS 126 174 174 LYS LYS A . n A 1 127 GLN 127 175 175 GLN GLN A . n A 1 128 LYS 128 176 176 LYS LYS A . n A 1 129 LEU 129 177 177 LEU LEU A . n A 1 130 ARG 130 178 178 ARG ARG A . n A 1 131 VAL 131 179 179 VAL VAL A . n A 1 132 LYS 132 180 180 LYS LYS A . n A 1 133 LYS 133 181 181 LYS LYS A . n A 1 134 ILE 134 182 182 ILE ILE A . n A 1 135 HIS 135 183 183 HIS HIS A . n A 1 136 GLU 136 184 184 GLU GLU A . n A 1 137 ASN 137 185 185 ASN ASN A . n A 1 138 GLU 138 186 186 GLU GLU A . n A 1 139 LYS 139 187 187 LYS LYS A . n A 1 140 ARG 140 188 ? ? ? A . n A 1 141 LEU 141 189 ? ? ? A . n A 1 142 GLU 142 190 ? ? ? A . n A 1 143 ALA 143 191 ? ? ? A . n A 1 144 GLY 144 192 ? ? ? A . n A 1 145 ASP 145 193 ? ? ? A . n A 1 146 HIS 146 194 ? ? ? A . n A 1 147 PRO 147 195 ? ? ? A . n A 1 148 GLU 148 204 ? ? ? A . n A 1 149 LYS 149 205 ? ? ? A . n A 1 150 ASN 150 206 206 ASN ASN A . n A 1 151 TYR 151 207 207 TYR TYR A . n A 1 152 ASN 152 208 208 ASN ASN A . n A 1 153 MET 153 209 209 MET MET A . n A 1 154 TYR 154 210 210 TYR TYR A . n A 1 155 ILE 155 211 211 ILE ILE A . n A 1 156 PHE 156 212 212 PHE PHE A . n A 1 157 PRO 157 213 213 PRO PRO A . n A 1 158 VAL 158 214 214 VAL VAL A . n A 1 159 HIS 159 215 215 HIS HIS A . n A 1 160 TRP 160 216 216 TRP TRP A . n A 1 161 GLN 161 217 217 GLN GLN A . n A 1 162 PHE 162 218 218 PHE PHE A . n A 1 163 GLY 163 219 219 GLY GLY A . n A 1 164 GLN 164 220 220 GLN GLN A . n A 1 165 LEU 165 221 221 LEU LEU A . n A 1 166 ASP 166 222 222 ASP ASP A . n A 1 167 GLN 167 223 223 GLN GLN A . n A 1 168 HIS 168 224 224 HIS HIS A . n A 1 169 PRO 169 225 225 PRO PRO A . n A 1 170 ILE 170 226 226 ILE ILE A . n A 1 171 ASP 171 227 227 ASP ASP A . n A 1 172 GLY 172 228 228 GLY GLY A . n A 1 173 TYR 173 229 229 TYR TYR A . n A 1 174 LEU 174 230 230 LEU LEU A . n A 1 175 SER 175 231 231 SER SER A . n A 1 176 HIS 176 232 232 HIS HIS A . n A 1 177 THR 177 233 233 THR THR A . n A 1 178 GLU 178 234 234 GLU GLU A . n A 1 179 LEU 179 235 235 LEU LEU A . n A 1 180 ALA 180 236 236 ALA ALA A . n A 1 181 PRO 181 237 237 PRO PRO A . n A 1 182 LEU 182 238 238 LEU LEU A . n A 1 183 ARG 183 239 239 ARG ARG A . n A 1 184 ALA 184 240 240 ALA ALA A . n A 1 185 PRO 185 241 241 PRO PRO A . n A 1 186 LEU 186 242 242 LEU LEU A . n A 1 187 ILE 187 243 243 ILE ILE A . n A 1 188 PRO 188 244 244 PRO PRO A . n A 1 189 MET 189 245 245 MET MET A . n A 1 190 GLU 190 246 246 GLU GLU A . n A 1 191 HIS 191 247 247 HIS HIS A . n A 1 192 CYS 192 248 248 CYS CYS A . n A 1 193 THR 193 249 249 THR THR A . n A 1 194 THR 194 250 250 THR THR A . n A 1 195 ARG 195 251 251 ARG ARG A . n A 1 196 PHE 196 252 252 PHE PHE A . n A 1 197 PHE 197 253 253 PHE PHE A . n A 1 198 GLU 198 254 254 GLU GLU A . n A 1 199 THR 199 255 255 THR THR A . n A 1 200 CYS 200 256 256 CYS CYS A . n A 1 201 ASP 201 257 257 ASP ASP A . n A 1 202 LEU 202 258 258 LEU LEU A . n A 1 203 ASP 203 259 259 ASP ASP A . n A 1 204 ASN 204 260 260 ASN ASN A . n A 1 205 ASP 205 261 261 ASP ASP A . n A 1 206 LYS 206 262 262 LYS LYS A . n A 1 207 TYR 207 263 263 TYR TYR A . n A 1 208 ILE 208 264 264 ILE ILE A . n A 1 209 ALA 209 265 265 ALA ALA A . n A 1 210 LEU 210 266 266 LEU LEU A . n A 1 211 ASP 211 267 267 ASP ASP A . n A 1 212 GLU 212 268 268 GLU GLU A . n A 1 213 TRP 213 269 269 TRP TRP A . n A 1 214 ALA 214 270 270 ALA ALA A . n A 1 215 GLY 215 271 271 GLY GLY A . n A 1 216 CYS 216 272 272 CYS CYS A . n A 1 217 PHE 217 273 273 PHE PHE A . n A 1 218 GLY 218 274 274 GLY GLY A . n A 1 219 ILE 219 275 275 ILE ILE A . n A 1 220 LYS 220 276 276 LYS LYS A . n A 1 221 GLN 221 277 277 GLN GLN A . n A 1 222 LYS 222 278 278 LYS LYS A . n A 1 223 ASP 223 279 279 ASP ASP A . n A 1 224 ILE 224 280 280 ILE ILE A . n A 1 225 ASP 225 281 281 ASP ASP A . n A 1 226 LYS 226 282 282 LYS LYS A . n A 1 227 ASP 227 283 283 ASP ASP A . n A 1 228 LEU 228 284 284 LEU LEU A . n A 1 229 VAL 229 285 285 VAL VAL A . n A 1 230 ILE 230 286 286 ILE ILE A . n B 2 1 GLY 1 1 1 GLY GLY B . n B 2 2 PRO 2 2 2 PRO PRO B . n B 2 3 HYP 3 3 3 HYP HYP B . n B 2 4 GLY 4 4 4 GLY GLY B . n B 2 5 PRO 5 5 5 PRO PRO B . n B 2 6 HYP 6 6 6 HYP HYP B . n B 2 7 GLY 7 7 7 GLY GLY B . n B 2 8 PRO 8 8 8 PRO PRO B . n B 2 9 HYP 9 9 9 HYP HYP B . n B 2 10 GLY 10 10 10 GLY GLY B . n B 2 11 PRO 11 11 11 PRO PRO B . n B 2 12 SER 12 12 12 SER SER B . n B 2 13 GLY 13 13 13 GLY GLY B . n B 2 14 PRO 14 14 14 PRO PRO B . n B 2 15 ARG 15 15 15 ARG ARG B . n B 2 16 GLY 16 16 16 GLY GLY B . n B 2 17 GLN 17 17 17 GLN GLN B . n B 2 18 HYP 18 18 18 HYP HYP B . n B 2 19 GLY 19 19 19 GLY GLY B . n B 2 20 VAL 20 20 20 VAL VAL B . n B 2 21 MET 21 21 21 MET MET B . n B 2 22 GLY 22 22 22 GLY GLY B . n B 2 23 PHE 23 23 23 PHE PHE B . n B 2 24 HYP 24 24 24 HYP HYP B . n B 2 25 GLY 25 25 25 GLY GLY B . n B 2 26 PRO 26 26 26 PRO PRO B . n B 2 27 LYS 27 27 27 LYS LYS B . n B 2 28 GLY 28 28 28 GLY GLY B . n B 2 29 PRO 29 29 29 PRO PRO B . n B 2 30 HYP 30 30 30 HYP HYP B . n B 2 31 GLY 31 31 31 GLY GLY B . n B 2 32 ALA 32 32 32 ALA ALA B . n B 2 33 HYP 33 33 33 HYP HYP B . n C 2 1 GLY 1 1 1 GLY GLY C . n C 2 2 PRO 2 2 2 PRO PRO C . n C 2 3 HYP 3 3 3 HYP HYP C . n C 2 4 GLY 4 4 4 GLY GLY C . n C 2 5 PRO 5 5 5 PRO PRO C . n C 2 6 HYP 6 6 6 HYP HYP C . n C 2 7 GLY 7 7 7 GLY GLY C . n C 2 8 PRO 8 8 8 PRO PRO C . n C 2 9 HYP 9 9 9 HYP HYP C . n C 2 10 GLY 10 10 10 GLY GLY C . n C 2 11 PRO 11 11 11 PRO PRO C . n C 2 12 SER 12 12 12 SER SER C . n C 2 13 GLY 13 13 13 GLY GLY C . n C 2 14 PRO 14 14 14 PRO PRO C . n C 2 15 ARG 15 15 15 ARG ARG C . n C 2 16 GLY 16 16 16 GLY GLY C . n C 2 17 GLN 17 17 17 GLN GLN C . n C 2 18 HYP 18 18 18 HYP HYP C . n C 2 19 GLY 19 19 19 GLY GLY C . n C 2 20 VAL 20 20 20 VAL VAL C . n C 2 21 MET 21 21 21 MET MET C . n C 2 22 GLY 22 22 22 GLY GLY C . n C 2 23 PHE 23 23 23 PHE PHE C . n C 2 24 HYP 24 24 24 HYP HYP C . n C 2 25 GLY 25 25 25 GLY GLY C . n C 2 26 PRO 26 26 26 PRO PRO C . n C 2 27 LYS 27 27 27 LYS LYS C . n C 2 28 GLY 28 28 28 GLY GLY C . n C 2 29 PRO 29 29 29 PRO PRO C . n C 2 30 HYP 30 30 30 HYP HYP C . n C 2 31 GLY 31 31 31 GLY GLY C . n C 2 32 ALA 32 32 32 ALA ALA C . n C 2 33 HYP 33 33 33 HYP HYP C . n D 2 1 GLY 1 1 1 GLY GLY D . n D 2 2 PRO 2 2 2 PRO PRO D . n D 2 3 HYP 3 3 3 HYP HYP D . n D 2 4 GLY 4 4 4 GLY GLY D . n D 2 5 PRO 5 5 5 PRO PRO D . n D 2 6 HYP 6 6 6 HYP HYP D . n D 2 7 GLY 7 7 7 GLY GLY D . n D 2 8 PRO 8 8 8 PRO PRO D . n D 2 9 HYP 9 9 9 HYP HYP D . n D 2 10 GLY 10 10 10 GLY GLY D . n D 2 11 PRO 11 11 11 PRO PRO D . n D 2 12 SER 12 12 12 SER SER D . n D 2 13 GLY 13 13 13 GLY GLY D . n D 2 14 PRO 14 14 14 PRO PRO D . n D 2 15 ARG 15 15 15 ARG ARG D . n D 2 16 GLY 16 16 16 GLY GLY D . n D 2 17 GLN 17 17 17 GLN GLN D . n D 2 18 HYP 18 18 18 HYP HYP D . n D 2 19 GLY 19 19 19 GLY GLY D . n D 2 20 VAL 20 20 20 VAL VAL D . n D 2 21 MET 21 21 21 MET MET D . n D 2 22 GLY 22 22 22 GLY GLY D . n D 2 23 PHE 23 23 23 PHE PHE D . n D 2 24 HYP 24 24 24 HYP HYP D . n D 2 25 GLY 25 25 25 GLY GLY D . n D 2 26 PRO 26 26 26 PRO PRO D . n D 2 27 LYS 27 27 27 LYS LYS D . n D 2 28 GLY 28 28 28 GLY GLY D . n D 2 29 PRO 29 29 29 PRO PRO D . n D 2 30 HYP 30 30 30 HYP HYP D . n D 2 31 GLY 31 31 31 GLY GLY D . n D 2 32 ALA 32 32 32 ALA ALA D . n D 2 33 HYP 33 33 33 HYP HYP D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 CA 1 301 301 CA CA A . G 5 SO4 1 401 401 SO4 SO4 D . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 51 A ASN 99 ? ASN 'GLYCOSYLATION SITE' 2 B HYP 3 B HYP 3 ? PRO 4-HYDROXYPROLINE 3 B HYP 6 B HYP 6 ? PRO 4-HYDROXYPROLINE 4 B HYP 9 B HYP 9 ? PRO 4-HYDROXYPROLINE 5 B HYP 18 B HYP 18 ? PRO 4-HYDROXYPROLINE 6 B HYP 24 B HYP 24 ? PRO 4-HYDROXYPROLINE 7 B HYP 30 B HYP 30 ? PRO 4-HYDROXYPROLINE 8 B HYP 33 B HYP 33 ? PRO 4-HYDROXYPROLINE 9 C HYP 3 C HYP 3 ? PRO 4-HYDROXYPROLINE 10 C HYP 6 C HYP 6 ? PRO 4-HYDROXYPROLINE 11 C HYP 9 C HYP 9 ? PRO 4-HYDROXYPROLINE 12 C HYP 18 C HYP 18 ? PRO 4-HYDROXYPROLINE 13 C HYP 24 C HYP 24 ? PRO 4-HYDROXYPROLINE 14 C HYP 30 C HYP 30 ? PRO 4-HYDROXYPROLINE 15 C HYP 33 C HYP 33 ? PRO 4-HYDROXYPROLINE 16 D HYP 3 D HYP 3 ? PRO 4-HYDROXYPROLINE 17 D HYP 6 D HYP 6 ? PRO 4-HYDROXYPROLINE 18 D HYP 9 D HYP 9 ? PRO 4-HYDROXYPROLINE 19 D HYP 18 D HYP 18 ? PRO 4-HYDROXYPROLINE 20 D HYP 24 D HYP 24 ? PRO 4-HYDROXYPROLINE 21 D HYP 30 D HYP 30 ? PRO 4-HYDROXYPROLINE 22 D HYP 33 D HYP 33 ? PRO 4-HYDROXYPROLINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7810 ? 1 MORE -58.6 ? 1 'SSA (A^2)' 21580 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 166 ? A ASP 222 ? 1_555 CA ? F CA . ? A CA 301 ? 1_555 O ? A PRO 169 ? A PRO 225 ? 1_555 80.3 ? 2 OD1 ? A ASP 166 ? A ASP 222 ? 1_555 CA ? F CA . ? A CA 301 ? 1_555 OD2 ? A ASP 171 ? A ASP 227 ? 1_555 80.2 ? 3 O ? A PRO 169 ? A PRO 225 ? 1_555 CA ? F CA . ? A CA 301 ? 1_555 OD2 ? A ASP 171 ? A ASP 227 ? 1_555 75.5 ? 4 OD1 ? A ASP 166 ? A ASP 222 ? 1_555 CA ? F CA . ? A CA 301 ? 1_555 O ? A TYR 173 ? A TYR 229 ? 1_555 85.6 ? 5 O ? A PRO 169 ? A PRO 225 ? 1_555 CA ? F CA . ? A CA 301 ? 1_555 O ? A TYR 173 ? A TYR 229 ? 1_555 146.9 ? 6 OD2 ? A ASP 171 ? A ASP 227 ? 1_555 CA ? F CA . ? A CA 301 ? 1_555 O ? A TYR 173 ? A TYR 229 ? 1_555 72.6 ? 7 OD1 ? A ASP 166 ? A ASP 222 ? 1_555 CA ? F CA . ? A CA 301 ? 1_555 OE1 ? A GLU 178 ? A GLU 234 ? 1_555 113.3 ? 8 O ? A PRO 169 ? A PRO 225 ? 1_555 CA ? F CA . ? A CA 301 ? 1_555 OE1 ? A GLU 178 ? A GLU 234 ? 1_555 149.0 ? 9 OD2 ? A ASP 171 ? A ASP 227 ? 1_555 CA ? F CA . ? A CA 301 ? 1_555 OE1 ? A GLU 178 ? A GLU 234 ? 1_555 132.6 ? 10 O ? A TYR 173 ? A TYR 229 ? 1_555 CA ? F CA . ? A CA 301 ? 1_555 OE1 ? A GLU 178 ? A GLU 234 ? 1_555 64.0 ? 11 OD1 ? A ASP 166 ? A ASP 222 ? 1_555 CA ? F CA . ? A CA 301 ? 1_555 OE2 ? A GLU 178 ? A GLU 234 ? 1_555 91.0 ? 12 O ? A PRO 169 ? A PRO 225 ? 1_555 CA ? F CA . ? A CA 301 ? 1_555 OE2 ? A GLU 178 ? A GLU 234 ? 1_555 106.5 ? 13 OD2 ? A ASP 171 ? A ASP 227 ? 1_555 CA ? F CA . ? A CA 301 ? 1_555 OE2 ? A GLU 178 ? A GLU 234 ? 1_555 170.6 ? 14 O ? A TYR 173 ? A TYR 229 ? 1_555 CA ? F CA . ? A CA 301 ? 1_555 OE2 ? A GLU 178 ? A GLU 234 ? 1_555 103.6 ? 15 OE1 ? A GLU 178 ? A GLU 234 ? 1_555 CA ? F CA . ? A CA 301 ? 1_555 OE2 ? A GLU 178 ? A GLU 234 ? 1_555 48.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-11-25 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 5 'Structure model' 2 1 2023-12-13 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other 7 4 'Structure model' 'Structure summary' 8 5 'Structure model' 'Data collection' 9 5 'Structure model' 'Database references' 10 5 'Structure model' 'Refinement description' 11 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' atom_site_anisotrop 3 4 'Structure model' chem_comp 4 4 'Structure model' entity 5 4 'Structure model' pdbx_branch_scheme 6 4 'Structure model' pdbx_chem_comp_identifier 7 4 'Structure model' pdbx_database_status 8 4 'Structure model' pdbx_entity_branch 9 4 'Structure model' pdbx_entity_branch_descriptor 10 4 'Structure model' pdbx_entity_branch_link 11 4 'Structure model' pdbx_entity_branch_list 12 4 'Structure model' pdbx_entity_nonpoly 13 4 'Structure model' pdbx_nonpoly_scheme 14 4 'Structure model' pdbx_struct_assembly_gen 15 4 'Structure model' pdbx_struct_conn_angle 16 4 'Structure model' struct_asym 17 4 'Structure model' struct_conn 18 4 'Structure model' struct_site 19 4 'Structure model' struct_site_gen 20 5 'Structure model' chem_comp 21 5 'Structure model' chem_comp_atom 22 5 'Structure model' chem_comp_bond 23 5 'Structure model' database_2 24 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.B_iso_or_equiv' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_atom_site.auth_asym_id' 6 4 'Structure model' '_atom_site.auth_atom_id' 7 4 'Structure model' '_atom_site.auth_comp_id' 8 4 'Structure model' '_atom_site.auth_seq_id' 9 4 'Structure model' '_atom_site.label_asym_id' 10 4 'Structure model' '_atom_site.label_atom_id' 11 4 'Structure model' '_atom_site.label_comp_id' 12 4 'Structure model' '_atom_site.label_entity_id' 13 4 'Structure model' '_atom_site.type_symbol' 14 4 'Structure model' '_atom_site_anisotrop.U[1][1]' 15 4 'Structure model' '_atom_site_anisotrop.U[1][2]' 16 4 'Structure model' '_atom_site_anisotrop.U[1][3]' 17 4 'Structure model' '_atom_site_anisotrop.U[2][2]' 18 4 'Structure model' '_atom_site_anisotrop.U[2][3]' 19 4 'Structure model' '_atom_site_anisotrop.U[3][3]' 20 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_asym_id' 21 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 22 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_comp_id' 23 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_seq_id' 24 4 'Structure model' '_atom_site_anisotrop.pdbx_label_asym_id' 25 4 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 26 4 'Structure model' '_atom_site_anisotrop.pdbx_label_comp_id' 27 4 'Structure model' '_atom_site_anisotrop.type_symbol' 28 4 'Structure model' '_chem_comp.name' 29 4 'Structure model' '_chem_comp.type' 30 4 'Structure model' '_entity.formula_weight' 31 4 'Structure model' '_entity.pdbx_description' 32 4 'Structure model' '_entity.pdbx_number_of_molecules' 33 4 'Structure model' '_entity.src_method' 34 4 'Structure model' '_entity.type' 35 4 'Structure model' '_pdbx_database_status.status_code_sf' 36 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 37 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 38 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 39 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 40 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 41 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 42 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 43 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 44 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 45 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 46 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 47 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 48 4 'Structure model' '_pdbx_struct_conn_angle.value' 49 4 'Structure model' '_struct_conn.conn_type_id' 50 4 'Structure model' '_struct_conn.id' 51 4 'Structure model' '_struct_conn.pdbx_dist_value' 52 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 53 4 'Structure model' '_struct_conn.pdbx_role' 54 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 55 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 56 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 57 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 58 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 59 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 60 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 61 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 62 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 63 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 64 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 65 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 66 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 67 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 68 5 'Structure model' '_chem_comp.pdbx_synonyms' 69 5 'Structure model' '_database_2.pdbx_DOI' 70 5 'Structure model' '_database_2.pdbx_database_accession' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 11.2295 -0.5784 41.1595 1.6696 0.6492 1.0095 -0.0007 0.5717 0.1416 0.3477 0.0897 0.1306 0.3664 0.1203 0.0181 0.8126 0.0555 0.5640 -1.4577 -0.0712 -1.5319 -0.7007 1.3629 0.0019 'X-RAY DIFFRACTION' 2 ? refined 1.2085 14.9927 52.4997 0.9646 0.2914 0.7461 -0.0532 -0.3034 0.1781 4.5242 2.1885 2.4664 -1.4510 -3.4292 0.8747 0.1266 -0.8493 -0.2257 -2.2387 1.3084 1.4652 0.4853 0.0792 0.3303 'X-RAY DIFFRACTION' 3 ? refined 14.5351 34.8188 45.7834 0.7424 0.3408 0.6680 -0.0849 0.0643 0.1323 0.3610 2.5222 0.9679 0.1785 0.7234 -0.7858 -0.1245 0.2919 0.3433 -0.3791 0.1468 0.0317 -0.4203 -0.2269 -0.0000 'X-RAY DIFFRACTION' 4 ? refined 24.2629 16.1195 54.1475 1.0191 0.6426 0.5268 0.0640 0.1750 -0.1678 1.0561 -0.3754 1.1913 0.0711 0.6410 -0.2858 0.2148 0.4872 0.3098 0.3994 -0.4553 -0.2217 0.3936 0.0857 -0.0001 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? 'CHAIN A AND (RESSEQ 54:85 OR RESSEQ 105:114)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? 'CHAIN A AND (RESSEQ 86:104 OR RESSEQ 115:135 OR RESSEQ 401:402)' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? 'CHAIN A AND (RESSEQ 136:187 OR RESSEQ 206:285 OR RESSEQ 301)' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? 'CHAIN B OR CHAIN C OR CHAIN D OR CHAIN Z' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOSFLM 'data reduction' . ? 1 SCALA 'data scaling' . ? 2 PHASER phasing . ? 3 autoSHARP phasing . ? 4 PHENIX refinement . ? 5 # _pdbx_entry_details.entry_id 2V53 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;4-HYDROXYPROLINE (HYP): 2R,4R-HYDROXYPROLINE N-ACETYLGLUCOSAMINE (NAG): A401 IS N-LINKED TO ASPARAGINE A99, A402 IS 1-4 LINKED TO A401 ; _pdbx_entry_details.sequence_details ;REGARDING CHAIN A: VECTOR-DERIVED APLA AT N-TERMINUS, 196-203 DELETED REGARDING CHAINS B, C AND D: PEPTIDE CORRESPONDS TO 564-584 OF HUMAN COLLAGEN ALPHA1(III) CHAIN, FLANKED BY GPOGPO AT N-TERMINUS AND GPOGAO AT C-TERMINUS (O IS 4-HYDROXYPROLINE) ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N A PRO 54 ? ? CA A PRO 54 ? ? CB A PRO 54 ? ? 110.55 103.30 7.25 1.20 N 2 1 C B GLY 4 ? ? N B PRO 5 ? ? CA B PRO 5 ? ? 128.39 119.30 9.09 1.50 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 56 ? ? -32.75 -37.45 2 1 LYS A 61 ? ? -49.88 162.37 3 1 GLU A 70 ? ? -59.64 -4.38 4 1 ASN A 97 ? ? -35.12 -36.27 5 1 PHE A 109 ? ? -63.63 -70.86 6 1 THR A 114 ? ? -80.40 45.44 7 1 GLU A 116 ? ? 165.25 142.66 8 1 TYR A 128 ? ? 177.85 160.77 9 1 GLU A 145 ? ? -46.89 1.74 10 1 THR A 160 ? ? -64.92 2.66 11 1 TYR A 162 ? ? -37.24 -38.51 12 1 ASP A 167 ? ? 93.22 64.64 13 1 ASN A 168 ? ? 44.20 23.74 14 1 THR A 172 ? ? -57.77 -163.63 15 1 LYS A 176 ? ? -43.03 -18.61 16 1 HIS A 183 ? ? -59.65 -84.63 17 1 GLU A 184 ? ? -30.88 85.28 18 1 ASN A 185 ? ? -158.22 86.74 19 1 GLU A 186 ? ? -94.12 33.56 20 1 TYR A 207 ? ? -32.11 -34.11 21 1 ASN A 208 ? ? -71.20 25.03 22 1 MET A 209 ? ? -131.32 -61.65 23 1 TYR A 210 ? ? -39.22 -35.57 24 1 PRO A 213 ? ? -30.74 -77.86 25 1 LEU A 221 ? ? -79.16 -82.99 26 1 ASP A 222 ? ? -33.55 100.82 27 1 GLN A 223 ? ? -158.49 -3.35 28 1 ASP A 227 ? ? -149.47 -7.27 29 1 ALA A 236 ? ? -21.77 -64.45 30 1 PRO A 237 ? ? -58.24 -6.24 31 1 PRO A 241 ? ? -69.35 0.46 32 1 GLU A 246 ? ? -155.75 82.67 33 1 THR A 255 ? ? -95.15 33.28 34 1 ASP A 257 ? ? -66.48 77.55 35 1 LYS A 262 ? ? 53.58 16.91 36 1 ILE A 280 ? ? -65.69 90.95 37 1 LYS A 282 ? ? -60.17 15.34 38 1 PRO B 5 ? ? -38.87 172.97 39 1 MET B 21 ? ? -48.30 165.74 40 1 ALA B 32 ? ? -33.30 151.31 41 1 VAL C 20 ? ? -41.29 157.39 42 1 HYP D 6 ? ? -45.18 157.20 43 1 PRO D 26 ? ? -49.61 -176.04 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A PRO 54 ? CG ? A PRO 6 CG 2 1 Y 1 A PRO 54 ? CD ? A PRO 6 CD 3 1 Y 1 A GLN 56 ? CG ? A GLN 8 CG 4 1 Y 1 A GLN 56 ? CD ? A GLN 8 CD 5 1 Y 1 A GLN 56 ? OE1 ? A GLN 8 OE1 6 1 Y 1 A GLN 56 ? NE2 ? A GLN 8 NE2 7 1 Y 1 A ASN 57 ? CG ? A ASN 9 CG 8 1 Y 1 A ASN 57 ? OD1 ? A ASN 9 OD1 9 1 Y 1 A ASN 57 ? ND2 ? A ASN 9 ND2 10 1 Y 1 A HIS 59 ? CG ? A HIS 11 CG 11 1 Y 1 A HIS 59 ? ND1 ? A HIS 11 ND1 12 1 Y 1 A HIS 59 ? CD2 ? A HIS 11 CD2 13 1 Y 1 A HIS 59 ? CE1 ? A HIS 11 CE1 14 1 Y 1 A HIS 59 ? NE2 ? A HIS 11 NE2 15 1 Y 1 A LYS 61 ? CG ? A LYS 13 CG 16 1 Y 1 A LYS 61 ? CD ? A LYS 13 CD 17 1 Y 1 A LYS 61 ? CE ? A LYS 13 CE 18 1 Y 1 A LYS 61 ? NZ ? A LYS 13 NZ 19 1 Y 1 A GLU 70 ? CG ? A GLU 22 CG 20 1 Y 1 A GLU 70 ? CD ? A GLU 22 CD 21 1 Y 1 A GLU 70 ? OE1 ? A GLU 22 OE1 22 1 Y 1 A GLU 70 ? OE2 ? A GLU 22 OE2 23 1 Y 1 A THR 73 ? OG1 ? A THR 25 OG1 24 1 Y 1 A THR 73 ? CG2 ? A THR 25 CG2 25 1 Y 1 A GLN 79 ? CG ? A GLN 31 CG 26 1 Y 1 A GLN 79 ? CD ? A GLN 31 CD 27 1 Y 1 A GLN 79 ? OE1 ? A GLN 31 OE1 28 1 Y 1 A GLN 79 ? NE2 ? A GLN 31 NE2 29 1 Y 1 A LYS 112 ? CG ? A LYS 64 CG 30 1 Y 1 A LYS 112 ? CD ? A LYS 64 CD 31 1 Y 1 A LYS 112 ? CE ? A LYS 64 CE 32 1 Y 1 A LYS 112 ? NZ ? A LYS 64 NZ 33 1 Y 1 A GLU 116 ? CG ? A GLU 68 CG 34 1 Y 1 A GLU 116 ? CD ? A GLU 68 CD 35 1 Y 1 A GLU 116 ? OE1 ? A GLU 68 OE1 36 1 Y 1 A GLU 116 ? OE2 ? A GLU 68 OE2 37 1 Y 1 A LYS 119 ? CG ? A LYS 71 CG 38 1 Y 1 A LYS 119 ? CD ? A LYS 71 CD 39 1 Y 1 A LYS 119 ? CE ? A LYS 71 CE 40 1 Y 1 A LYS 119 ? NZ ? A LYS 71 NZ 41 1 Y 1 A LYS 120 ? CG ? A LYS 72 CG 42 1 Y 1 A LYS 120 ? CD ? A LYS 72 CD 43 1 Y 1 A LYS 120 ? CE ? A LYS 72 CE 44 1 Y 1 A LYS 120 ? NZ ? A LYS 72 NZ 45 1 Y 1 A HIS 122 ? CG ? A HIS 74 CG 46 1 Y 1 A HIS 122 ? ND1 ? A HIS 74 ND1 47 1 Y 1 A HIS 122 ? CD2 ? A HIS 74 CD2 48 1 Y 1 A HIS 122 ? CE1 ? A HIS 74 CE1 49 1 Y 1 A HIS 122 ? NE2 ? A HIS 74 NE2 50 1 Y 1 A LYS 123 ? CG ? A LYS 75 CG 51 1 Y 1 A LYS 123 ? CD ? A LYS 75 CD 52 1 Y 1 A LYS 123 ? CE ? A LYS 75 CE 53 1 Y 1 A LYS 123 ? NZ ? A LYS 75 NZ 54 1 Y 1 A LYS 155 ? CG ? A LYS 107 CG 55 1 Y 1 A LYS 155 ? CD ? A LYS 107 CD 56 1 Y 1 A LYS 155 ? CE ? A LYS 107 CE 57 1 Y 1 A LYS 155 ? NZ ? A LYS 107 NZ 58 1 Y 1 A LYS 174 ? CG ? A LYS 126 CG 59 1 Y 1 A LYS 174 ? CD ? A LYS 126 CD 60 1 Y 1 A LYS 174 ? CE ? A LYS 126 CE 61 1 Y 1 A LYS 174 ? NZ ? A LYS 126 NZ 62 1 Y 1 A ARG 178 ? CG ? A ARG 130 CG 63 1 Y 1 A ARG 178 ? CD ? A ARG 130 CD 64 1 Y 1 A ARG 178 ? NE ? A ARG 130 NE 65 1 Y 1 A ARG 178 ? CZ ? A ARG 130 CZ 66 1 Y 1 A ARG 178 ? NH1 ? A ARG 130 NH1 67 1 Y 1 A ARG 178 ? NH2 ? A ARG 130 NH2 68 1 Y 1 A LYS 180 ? CG ? A LYS 132 CG 69 1 Y 1 A LYS 180 ? CD ? A LYS 132 CD 70 1 Y 1 A LYS 180 ? CE ? A LYS 132 CE 71 1 Y 1 A LYS 180 ? NZ ? A LYS 132 NZ 72 1 Y 1 A LYS 181 ? CG ? A LYS 133 CG 73 1 Y 1 A LYS 181 ? CD ? A LYS 133 CD 74 1 Y 1 A LYS 181 ? CE ? A LYS 133 CE 75 1 Y 1 A LYS 181 ? NZ ? A LYS 133 NZ 76 1 Y 1 A GLU 184 ? CG ? A GLU 136 CG 77 1 Y 1 A GLU 184 ? CD ? A GLU 136 CD 78 1 Y 1 A GLU 184 ? OE1 ? A GLU 136 OE1 79 1 Y 1 A GLU 184 ? OE2 ? A GLU 136 OE2 80 1 Y 1 A GLU 186 ? CG ? A GLU 138 CG 81 1 Y 1 A GLU 186 ? CD ? A GLU 138 CD 82 1 Y 1 A GLU 186 ? OE1 ? A GLU 138 OE1 83 1 Y 1 A GLU 186 ? OE2 ? A GLU 138 OE2 84 1 Y 1 A LYS 187 ? CG ? A LYS 139 CG 85 1 Y 1 A LYS 187 ? CD ? A LYS 139 CD 86 1 Y 1 A LYS 187 ? CE ? A LYS 139 CE 87 1 Y 1 A LYS 187 ? NZ ? A LYS 139 NZ 88 1 Y 1 A LYS 262 ? CG ? A LYS 206 CG 89 1 Y 1 A LYS 262 ? CD ? A LYS 206 CD 90 1 Y 1 A LYS 262 ? CE ? A LYS 206 CE 91 1 Y 1 A LYS 262 ? NZ ? A LYS 206 NZ 92 1 Y 1 A LYS 276 ? CG ? A LYS 220 CG 93 1 Y 1 A LYS 276 ? CD ? A LYS 220 CD 94 1 Y 1 A LYS 276 ? CE ? A LYS 220 CE 95 1 Y 1 A LYS 276 ? NZ ? A LYS 220 NZ 96 1 Y 1 A LYS 278 ? CG ? A LYS 222 CG 97 1 Y 1 A LYS 278 ? CD ? A LYS 222 CD 98 1 Y 1 A LYS 278 ? CE ? A LYS 222 CE 99 1 Y 1 A LYS 278 ? NZ ? A LYS 222 NZ 100 1 Y 1 A LYS 282 ? CG ? A LYS 226 CG 101 1 Y 1 A LYS 282 ? CD ? A LYS 226 CD 102 1 Y 1 A LYS 282 ? CE ? A LYS 226 CE 103 1 Y 1 A LYS 282 ? NZ ? A LYS 226 NZ 104 1 Y 1 A ILE 286 ? CA ? A ILE 230 CA 105 1 Y 1 A ILE 286 ? C ? A ILE 230 C 106 1 Y 1 A ILE 286 ? O ? A ILE 230 O 107 1 Y 1 A ILE 286 ? CB ? A ILE 230 CB 108 1 Y 1 A ILE 286 ? CG1 ? A ILE 230 CG1 109 1 Y 1 A ILE 286 ? CG2 ? A ILE 230 CG2 110 1 Y 1 A ILE 286 ? CD1 ? A ILE 230 CD1 111 1 Y 1 B ARG 15 ? CG ? B ARG 15 CG 112 1 Y 1 B ARG 15 ? CD ? B ARG 15 CD 113 1 Y 1 B ARG 15 ? NE ? B ARG 15 NE 114 1 Y 1 B ARG 15 ? CZ ? B ARG 15 CZ 115 1 Y 1 B ARG 15 ? NH1 ? B ARG 15 NH1 116 1 Y 1 B ARG 15 ? NH2 ? B ARG 15 NH2 117 1 Y 1 B LYS 27 ? CG ? B LYS 27 CG 118 1 Y 1 B LYS 27 ? CD ? B LYS 27 CD 119 1 Y 1 B LYS 27 ? CE ? B LYS 27 CE 120 1 Y 1 B LYS 27 ? NZ ? B LYS 27 NZ 121 1 Y 1 C LYS 27 ? CG ? C LYS 27 CG 122 1 Y 1 C LYS 27 ? CD ? C LYS 27 CD 123 1 Y 1 C LYS 27 ? CE ? C LYS 27 CE 124 1 Y 1 C LYS 27 ? NZ ? C LYS 27 NZ 125 1 Y 1 D LYS 27 ? CG ? D LYS 27 CG 126 1 Y 1 D LYS 27 ? CD ? D LYS 27 CD 127 1 Y 1 D LYS 27 ? CE ? D LYS 27 CE 128 1 Y 1 D LYS 27 ? NZ ? D LYS 27 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 49 ? A ALA 1 2 1 Y 1 A PRO 50 ? A PRO 2 3 1 Y 1 A LEU 51 ? A LEU 3 4 1 Y 1 A ALA 52 ? A ALA 4 5 1 Y 1 A ASN 53 ? A ASN 5 6 1 Y 1 A ARG 188 ? A ARG 140 7 1 Y 1 A LEU 189 ? A LEU 141 8 1 Y 1 A GLU 190 ? A GLU 142 9 1 Y 1 A ALA 191 ? A ALA 143 10 1 Y 1 A GLY 192 ? A GLY 144 11 1 Y 1 A ASP 193 ? A ASP 145 12 1 Y 1 A HIS 194 ? A HIS 146 13 1 Y 1 A PRO 195 ? A PRO 147 14 1 Y 1 A GLU 204 ? A GLU 148 15 1 Y 1 A LYS 205 ? A LYS 149 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CA CA CA N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 GLN N N N N 89 GLN CA C N S 90 GLN C C N N 91 GLN O O N N 92 GLN CB C N N 93 GLN CG C N N 94 GLN CD C N N 95 GLN OE1 O N N 96 GLN NE2 N N N 97 GLN OXT O N N 98 GLN H H N N 99 GLN H2 H N N 100 GLN HA H N N 101 GLN HB2 H N N 102 GLN HB3 H N N 103 GLN HG2 H N N 104 GLN HG3 H N N 105 GLN HE21 H N N 106 GLN HE22 H N N 107 GLN HXT H N N 108 GLU N N N N 109 GLU CA C N S 110 GLU C C N N 111 GLU O O N N 112 GLU CB C N N 113 GLU CG C N N 114 GLU CD C N N 115 GLU OE1 O N N 116 GLU OE2 O N N 117 GLU OXT O N N 118 GLU H H N N 119 GLU H2 H N N 120 GLU HA H N N 121 GLU HB2 H N N 122 GLU HB3 H N N 123 GLU HG2 H N N 124 GLU HG3 H N N 125 GLU HE2 H N N 126 GLU HXT H N N 127 GLY N N N N 128 GLY CA C N N 129 GLY C C N N 130 GLY O O N N 131 GLY OXT O N N 132 GLY H H N N 133 GLY H2 H N N 134 GLY HA2 H N N 135 GLY HA3 H N N 136 GLY HXT H N N 137 HIS N N N N 138 HIS CA C N S 139 HIS C C N N 140 HIS O O N N 141 HIS CB C N N 142 HIS CG C Y N 143 HIS ND1 N Y N 144 HIS CD2 C Y N 145 HIS CE1 C Y N 146 HIS NE2 N Y N 147 HIS OXT O N N 148 HIS H H N N 149 HIS H2 H N N 150 HIS HA H N N 151 HIS HB2 H N N 152 HIS HB3 H N N 153 HIS HD1 H N N 154 HIS HD2 H N N 155 HIS HE1 H N N 156 HIS HE2 H N N 157 HIS HXT H N N 158 HYP N N N N 159 HYP CA C N S 160 HYP C C N N 161 HYP O O N N 162 HYP CB C N N 163 HYP CG C N R 164 HYP CD C N N 165 HYP OD1 O N N 166 HYP OXT O N N 167 HYP H H N N 168 HYP HA H N N 169 HYP HB2 H N N 170 HYP HB3 H N N 171 HYP HG H N N 172 HYP HD22 H N N 173 HYP HD23 H N N 174 HYP HD1 H N N 175 HYP HXT H N N 176 ILE N N N N 177 ILE CA C N S 178 ILE C C N N 179 ILE O O N N 180 ILE CB C N S 181 ILE CG1 C N N 182 ILE CG2 C N N 183 ILE CD1 C N N 184 ILE OXT O N N 185 ILE H H N N 186 ILE H2 H N N 187 ILE HA H N N 188 ILE HB H N N 189 ILE HG12 H N N 190 ILE HG13 H N N 191 ILE HG21 H N N 192 ILE HG22 H N N 193 ILE HG23 H N N 194 ILE HD11 H N N 195 ILE HD12 H N N 196 ILE HD13 H N N 197 ILE HXT H N N 198 LEU N N N N 199 LEU CA C N S 200 LEU C C N N 201 LEU O O N N 202 LEU CB C N N 203 LEU CG C N N 204 LEU CD1 C N N 205 LEU CD2 C N N 206 LEU OXT O N N 207 LEU H H N N 208 LEU H2 H N N 209 LEU HA H N N 210 LEU HB2 H N N 211 LEU HB3 H N N 212 LEU HG H N N 213 LEU HD11 H N N 214 LEU HD12 H N N 215 LEU HD13 H N N 216 LEU HD21 H N N 217 LEU HD22 H N N 218 LEU HD23 H N N 219 LEU HXT H N N 220 LYS N N N N 221 LYS CA C N S 222 LYS C C N N 223 LYS O O N N 224 LYS CB C N N 225 LYS CG C N N 226 LYS CD C N N 227 LYS CE C N N 228 LYS NZ N N N 229 LYS OXT O N N 230 LYS H H N N 231 LYS H2 H N N 232 LYS HA H N N 233 LYS HB2 H N N 234 LYS HB3 H N N 235 LYS HG2 H N N 236 LYS HG3 H N N 237 LYS HD2 H N N 238 LYS HD3 H N N 239 LYS HE2 H N N 240 LYS HE3 H N N 241 LYS HZ1 H N N 242 LYS HZ2 H N N 243 LYS HZ3 H N N 244 LYS HXT H N N 245 MET N N N N 246 MET CA C N S 247 MET C C N N 248 MET O O N N 249 MET CB C N N 250 MET CG C N N 251 MET SD S N N 252 MET CE C N N 253 MET OXT O N N 254 MET H H N N 255 MET H2 H N N 256 MET HA H N N 257 MET HB2 H N N 258 MET HB3 H N N 259 MET HG2 H N N 260 MET HG3 H N N 261 MET HE1 H N N 262 MET HE2 H N N 263 MET HE3 H N N 264 MET HXT H N N 265 NAG C1 C N R 266 NAG C2 C N R 267 NAG C3 C N R 268 NAG C4 C N S 269 NAG C5 C N R 270 NAG C6 C N N 271 NAG C7 C N N 272 NAG C8 C N N 273 NAG N2 N N N 274 NAG O1 O N N 275 NAG O3 O N N 276 NAG O4 O N N 277 NAG O5 O N N 278 NAG O6 O N N 279 NAG O7 O N N 280 NAG H1 H N N 281 NAG H2 H N N 282 NAG H3 H N N 283 NAG H4 H N N 284 NAG H5 H N N 285 NAG H61 H N N 286 NAG H62 H N N 287 NAG H81 H N N 288 NAG H82 H N N 289 NAG H83 H N N 290 NAG HN2 H N N 291 NAG HO1 H N N 292 NAG HO3 H N N 293 NAG HO4 H N N 294 NAG HO6 H N N 295 PHE N N N N 296 PHE CA C N S 297 PHE C C N N 298 PHE O O N N 299 PHE CB C N N 300 PHE CG C Y N 301 PHE CD1 C Y N 302 PHE CD2 C Y N 303 PHE CE1 C Y N 304 PHE CE2 C Y N 305 PHE CZ C Y N 306 PHE OXT O N N 307 PHE H H N N 308 PHE H2 H N N 309 PHE HA H N N 310 PHE HB2 H N N 311 PHE HB3 H N N 312 PHE HD1 H N N 313 PHE HD2 H N N 314 PHE HE1 H N N 315 PHE HE2 H N N 316 PHE HZ H N N 317 PHE HXT H N N 318 PRO N N N N 319 PRO CA C N S 320 PRO C C N N 321 PRO O O N N 322 PRO CB C N N 323 PRO CG C N N 324 PRO CD C N N 325 PRO OXT O N N 326 PRO H H N N 327 PRO HA H N N 328 PRO HB2 H N N 329 PRO HB3 H N N 330 PRO HG2 H N N 331 PRO HG3 H N N 332 PRO HD2 H N N 333 PRO HD3 H N N 334 PRO HXT H N N 335 SER N N N N 336 SER CA C N S 337 SER C C N N 338 SER O O N N 339 SER CB C N N 340 SER OG O N N 341 SER OXT O N N 342 SER H H N N 343 SER H2 H N N 344 SER HA H N N 345 SER HB2 H N N 346 SER HB3 H N N 347 SER HG H N N 348 SER HXT H N N 349 SO4 S S N N 350 SO4 O1 O N N 351 SO4 O2 O N N 352 SO4 O3 O N N 353 SO4 O4 O N N 354 THR N N N N 355 THR CA C N S 356 THR C C N N 357 THR O O N N 358 THR CB C N R 359 THR OG1 O N N 360 THR CG2 C N N 361 THR OXT O N N 362 THR H H N N 363 THR H2 H N N 364 THR HA H N N 365 THR HB H N N 366 THR HG1 H N N 367 THR HG21 H N N 368 THR HG22 H N N 369 THR HG23 H N N 370 THR HXT H N N 371 TRP N N N N 372 TRP CA C N S 373 TRP C C N N 374 TRP O O N N 375 TRP CB C N N 376 TRP CG C Y N 377 TRP CD1 C Y N 378 TRP CD2 C Y N 379 TRP NE1 N Y N 380 TRP CE2 C Y N 381 TRP CE3 C Y N 382 TRP CZ2 C Y N 383 TRP CZ3 C Y N 384 TRP CH2 C Y N 385 TRP OXT O N N 386 TRP H H N N 387 TRP H2 H N N 388 TRP HA H N N 389 TRP HB2 H N N 390 TRP HB3 H N N 391 TRP HD1 H N N 392 TRP HE1 H N N 393 TRP HE3 H N N 394 TRP HZ2 H N N 395 TRP HZ3 H N N 396 TRP HH2 H N N 397 TRP HXT H N N 398 TYR N N N N 399 TYR CA C N S 400 TYR C C N N 401 TYR O O N N 402 TYR CB C N N 403 TYR CG C Y N 404 TYR CD1 C Y N 405 TYR CD2 C Y N 406 TYR CE1 C Y N 407 TYR CE2 C Y N 408 TYR CZ C Y N 409 TYR OH O N N 410 TYR OXT O N N 411 TYR H H N N 412 TYR H2 H N N 413 TYR HA H N N 414 TYR HB2 H N N 415 TYR HB3 H N N 416 TYR HD1 H N N 417 TYR HD2 H N N 418 TYR HE1 H N N 419 TYR HE2 H N N 420 TYR HH H N N 421 TYR HXT H N N 422 VAL N N N N 423 VAL CA C N S 424 VAL C C N N 425 VAL O O N N 426 VAL CB C N N 427 VAL CG1 C N N 428 VAL CG2 C N N 429 VAL OXT O N N 430 VAL H H N N 431 VAL H2 H N N 432 VAL HA H N N 433 VAL HB H N N 434 VAL HG11 H N N 435 VAL HG12 H N N 436 VAL HG13 H N N 437 VAL HG21 H N N 438 VAL HG22 H N N 439 VAL HG23 H N N 440 VAL HXT H N N 441 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HYP N CA sing N N 150 HYP N CD sing N N 151 HYP N H sing N N 152 HYP CA C sing N N 153 HYP CA CB sing N N 154 HYP CA HA sing N N 155 HYP C O doub N N 156 HYP C OXT sing N N 157 HYP CB CG sing N N 158 HYP CB HB2 sing N N 159 HYP CB HB3 sing N N 160 HYP CG CD sing N N 161 HYP CG OD1 sing N N 162 HYP CG HG sing N N 163 HYP CD HD22 sing N N 164 HYP CD HD23 sing N N 165 HYP OD1 HD1 sing N N 166 HYP OXT HXT sing N N 167 ILE N CA sing N N 168 ILE N H sing N N 169 ILE N H2 sing N N 170 ILE CA C sing N N 171 ILE CA CB sing N N 172 ILE CA HA sing N N 173 ILE C O doub N N 174 ILE C OXT sing N N 175 ILE CB CG1 sing N N 176 ILE CB CG2 sing N N 177 ILE CB HB sing N N 178 ILE CG1 CD1 sing N N 179 ILE CG1 HG12 sing N N 180 ILE CG1 HG13 sing N N 181 ILE CG2 HG21 sing N N 182 ILE CG2 HG22 sing N N 183 ILE CG2 HG23 sing N N 184 ILE CD1 HD11 sing N N 185 ILE CD1 HD12 sing N N 186 ILE CD1 HD13 sing N N 187 ILE OXT HXT sing N N 188 LEU N CA sing N N 189 LEU N H sing N N 190 LEU N H2 sing N N 191 LEU CA C sing N N 192 LEU CA CB sing N N 193 LEU CA HA sing N N 194 LEU C O doub N N 195 LEU C OXT sing N N 196 LEU CB CG sing N N 197 LEU CB HB2 sing N N 198 LEU CB HB3 sing N N 199 LEU CG CD1 sing N N 200 LEU CG CD2 sing N N 201 LEU CG HG sing N N 202 LEU CD1 HD11 sing N N 203 LEU CD1 HD12 sing N N 204 LEU CD1 HD13 sing N N 205 LEU CD2 HD21 sing N N 206 LEU CD2 HD22 sing N N 207 LEU CD2 HD23 sing N N 208 LEU OXT HXT sing N N 209 LYS N CA sing N N 210 LYS N H sing N N 211 LYS N H2 sing N N 212 LYS CA C sing N N 213 LYS CA CB sing N N 214 LYS CA HA sing N N 215 LYS C O doub N N 216 LYS C OXT sing N N 217 LYS CB CG sing N N 218 LYS CB HB2 sing N N 219 LYS CB HB3 sing N N 220 LYS CG CD sing N N 221 LYS CG HG2 sing N N 222 LYS CG HG3 sing N N 223 LYS CD CE sing N N 224 LYS CD HD2 sing N N 225 LYS CD HD3 sing N N 226 LYS CE NZ sing N N 227 LYS CE HE2 sing N N 228 LYS CE HE3 sing N N 229 LYS NZ HZ1 sing N N 230 LYS NZ HZ2 sing N N 231 LYS NZ HZ3 sing N N 232 LYS OXT HXT sing N N 233 MET N CA sing N N 234 MET N H sing N N 235 MET N H2 sing N N 236 MET CA C sing N N 237 MET CA CB sing N N 238 MET CA HA sing N N 239 MET C O doub N N 240 MET C OXT sing N N 241 MET CB CG sing N N 242 MET CB HB2 sing N N 243 MET CB HB3 sing N N 244 MET CG SD sing N N 245 MET CG HG2 sing N N 246 MET CG HG3 sing N N 247 MET SD CE sing N N 248 MET CE HE1 sing N N 249 MET CE HE2 sing N N 250 MET CE HE3 sing N N 251 MET OXT HXT sing N N 252 NAG C1 C2 sing N N 253 NAG C1 O1 sing N N 254 NAG C1 O5 sing N N 255 NAG C1 H1 sing N N 256 NAG C2 C3 sing N N 257 NAG C2 N2 sing N N 258 NAG C2 H2 sing N N 259 NAG C3 C4 sing N N 260 NAG C3 O3 sing N N 261 NAG C3 H3 sing N N 262 NAG C4 C5 sing N N 263 NAG C4 O4 sing N N 264 NAG C4 H4 sing N N 265 NAG C5 C6 sing N N 266 NAG C5 O5 sing N N 267 NAG C5 H5 sing N N 268 NAG C6 O6 sing N N 269 NAG C6 H61 sing N N 270 NAG C6 H62 sing N N 271 NAG C7 C8 sing N N 272 NAG C7 N2 sing N N 273 NAG C7 O7 doub N N 274 NAG C8 H81 sing N N 275 NAG C8 H82 sing N N 276 NAG C8 H83 sing N N 277 NAG N2 HN2 sing N N 278 NAG O1 HO1 sing N N 279 NAG O3 HO3 sing N N 280 NAG O4 HO4 sing N N 281 NAG O6 HO6 sing N N 282 PHE N CA sing N N 283 PHE N H sing N N 284 PHE N H2 sing N N 285 PHE CA C sing N N 286 PHE CA CB sing N N 287 PHE CA HA sing N N 288 PHE C O doub N N 289 PHE C OXT sing N N 290 PHE CB CG sing N N 291 PHE CB HB2 sing N N 292 PHE CB HB3 sing N N 293 PHE CG CD1 doub Y N 294 PHE CG CD2 sing Y N 295 PHE CD1 CE1 sing Y N 296 PHE CD1 HD1 sing N N 297 PHE CD2 CE2 doub Y N 298 PHE CD2 HD2 sing N N 299 PHE CE1 CZ doub Y N 300 PHE CE1 HE1 sing N N 301 PHE CE2 CZ sing Y N 302 PHE CE2 HE2 sing N N 303 PHE CZ HZ sing N N 304 PHE OXT HXT sing N N 305 PRO N CA sing N N 306 PRO N CD sing N N 307 PRO N H sing N N 308 PRO CA C sing N N 309 PRO CA CB sing N N 310 PRO CA HA sing N N 311 PRO C O doub N N 312 PRO C OXT sing N N 313 PRO CB CG sing N N 314 PRO CB HB2 sing N N 315 PRO CB HB3 sing N N 316 PRO CG CD sing N N 317 PRO CG HG2 sing N N 318 PRO CG HG3 sing N N 319 PRO CD HD2 sing N N 320 PRO CD HD3 sing N N 321 PRO OXT HXT sing N N 322 SER N CA sing N N 323 SER N H sing N N 324 SER N H2 sing N N 325 SER CA C sing N N 326 SER CA CB sing N N 327 SER CA HA sing N N 328 SER C O doub N N 329 SER C OXT sing N N 330 SER CB OG sing N N 331 SER CB HB2 sing N N 332 SER CB HB3 sing N N 333 SER OG HG sing N N 334 SER OXT HXT sing N N 335 SO4 S O1 doub N N 336 SO4 S O2 doub N N 337 SO4 S O3 sing N N 338 SO4 S O4 sing N N 339 THR N CA sing N N 340 THR N H sing N N 341 THR N H2 sing N N 342 THR CA C sing N N 343 THR CA CB sing N N 344 THR CA HA sing N N 345 THR C O doub N N 346 THR C OXT sing N N 347 THR CB OG1 sing N N 348 THR CB CG2 sing N N 349 THR CB HB sing N N 350 THR OG1 HG1 sing N N 351 THR CG2 HG21 sing N N 352 THR CG2 HG22 sing N N 353 THR CG2 HG23 sing N N 354 THR OXT HXT sing N N 355 TRP N CA sing N N 356 TRP N H sing N N 357 TRP N H2 sing N N 358 TRP CA C sing N N 359 TRP CA CB sing N N 360 TRP CA HA sing N N 361 TRP C O doub N N 362 TRP C OXT sing N N 363 TRP CB CG sing N N 364 TRP CB HB2 sing N N 365 TRP CB HB3 sing N N 366 TRP CG CD1 doub Y N 367 TRP CG CD2 sing Y N 368 TRP CD1 NE1 sing Y N 369 TRP CD1 HD1 sing N N 370 TRP CD2 CE2 doub Y N 371 TRP CD2 CE3 sing Y N 372 TRP NE1 CE2 sing Y N 373 TRP NE1 HE1 sing N N 374 TRP CE2 CZ2 sing Y N 375 TRP CE3 CZ3 doub Y N 376 TRP CE3 HE3 sing N N 377 TRP CZ2 CH2 doub Y N 378 TRP CZ2 HZ2 sing N N 379 TRP CZ3 CH2 sing Y N 380 TRP CZ3 HZ3 sing N N 381 TRP CH2 HH2 sing N N 382 TRP OXT HXT sing N N 383 TYR N CA sing N N 384 TYR N H sing N N 385 TYR N H2 sing N N 386 TYR CA C sing N N 387 TYR CA CB sing N N 388 TYR CA HA sing N N 389 TYR C O doub N N 390 TYR C OXT sing N N 391 TYR CB CG sing N N 392 TYR CB HB2 sing N N 393 TYR CB HB3 sing N N 394 TYR CG CD1 doub Y N 395 TYR CG CD2 sing Y N 396 TYR CD1 CE1 sing Y N 397 TYR CD1 HD1 sing N N 398 TYR CD2 CE2 doub Y N 399 TYR CD2 HD2 sing N N 400 TYR CE1 CZ doub Y N 401 TYR CE1 HE1 sing N N 402 TYR CE2 CZ sing Y N 403 TYR CE2 HE2 sing N N 404 TYR CZ OH sing N N 405 TYR OH HH sing N N 406 TYR OXT HXT sing N N 407 VAL N CA sing N N 408 VAL N H sing N N 409 VAL N H2 sing N N 410 VAL CA C sing N N 411 VAL CA CB sing N N 412 VAL CA HA sing N N 413 VAL C O doub N N 414 VAL C OXT sing N N 415 VAL CB CG1 sing N N 416 VAL CB CG2 sing N N 417 VAL CB HB sing N N 418 VAL CG1 HG11 sing N N 419 VAL CG1 HG12 sing N N 420 VAL CG1 HG13 sing N N 421 VAL CG2 HG21 sing N N 422 VAL CG2 HG22 sing N N 423 VAL CG2 HG23 sing N N 424 VAL OXT HXT sing N N 425 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero E 3 NAG 1 E NAG 1 A NAG 401 n E 3 NAG 2 E NAG 2 A NAG 402 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 3 DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 3 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 3 3 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 3 NAG 1 n 3 NAG 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'CALCIUM ION' CA 5 'SULFATE ION' SO4 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1NUB _pdbx_initial_refinement_model.details 'PDB ENTRY 1NUB' #