HEADER TRANSCRIPTION 02-OCT-08 2V57 TITLE CRYSTAL STRUCTURE OF THE TETR-LIKE TRANSCRIPTIONAL TITLE 2 REGULATOR LFRR FROM MYCOBACTERIUM SMEGMATIS IN COMPLEX TITLE 3 WITH PROFLAVINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TETR FAMILY TRANSCRIPTIONAL REPRESSOR LFRR; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: TRANSCRIPTIONAL REGULATOR LFRR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 1772; SOURCE 4 STRAIN: MC2155; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS TETR, LFRR, REPRESSOR, DNA-BINDING, TRANSCRIPTION, KEYWDS 2 TRANSCRIPTION REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR M.BELLINZONI,S.BURONI,G.RICCARDI,E.DE ROSSI,P.M.ALZARI REVDAT 2 08-DEC-09 2V57 1 JRNL REVDAT 1 20-OCT-09 2V57 0 JRNL AUTH M.BELLINZONI,S.BURONI,F.SCHAEFFER,G.RICCARDI, JRNL AUTH 2 E.DE ROSSI,P.M.ALZARI JRNL TITL STRUCTURAL PLASTICITY AND DISTINCT DRUG-BINDING JRNL TITL 2 MODES OF LFRR, A MYCOBACTERIAL EFFLUX PUMP JRNL TITL 3 REGULATOR. JRNL REF J.BACTERIOL. V. 191 7531 2009 JRNL REFN ISSN 0021-9193 JRNL PMID 19820093 JRNL DOI 10.1128/JB.00631-09 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.280 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 3 NUMBER OF REFLECTIONS : 105612 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5297 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.2834 - 5.9003 0.94 3464 183 0.2057 0.2260 REMARK 3 2 5.9003 - 4.6845 0.95 3506 185 0.1966 0.2145 REMARK 3 3 4.6845 - 4.0927 0.94 3502 194 0.1603 0.1922 REMARK 3 4 4.0927 - 3.7186 0.95 3469 184 0.1695 0.2111 REMARK 3 5 3.7186 - 3.4522 0.94 3472 185 0.1629 0.1877 REMARK 3 6 3.4522 - 3.2487 0.93 3441 172 0.1773 0.2086 REMARK 3 7 3.2487 - 3.0860 0.93 3459 186 0.1802 0.2269 REMARK 3 8 3.0860 - 2.9517 0.93 3405 171 0.1907 0.2213 REMARK 3 9 2.9517 - 2.8381 0.93 3412 181 0.1866 0.2359 REMARK 3 10 2.8381 - 2.7402 0.92 3443 185 0.1916 0.2348 REMARK 3 11 2.7402 - 2.6545 0.92 3386 172 0.1838 0.2577 REMARK 3 12 2.6545 - 2.5786 0.92 3396 179 0.1892 0.2375 REMARK 3 13 2.5786 - 2.5107 0.91 3307 183 0.1848 0.2589 REMARK 3 14 2.5107 - 2.4495 0.91 3412 180 0.1892 0.2309 REMARK 3 15 2.4495 - 2.3938 0.90 3321 178 0.1900 0.2558 REMARK 3 16 2.3938 - 2.3429 0.90 3332 176 0.1785 0.2089 REMARK 3 17 2.3429 - 2.2960 0.90 3289 165 0.1911 0.2488 REMARK 3 18 2.2960 - 2.2527 0.90 3413 186 0.1991 0.2703 REMARK 3 19 2.2527 - 2.2124 0.91 3283 178 0.1970 0.2618 REMARK 3 20 2.2124 - 2.1749 0.89 3305 164 0.2095 0.2278 REMARK 3 21 2.1749 - 2.1399 0.90 3273 176 0.2012 0.2501 REMARK 3 22 2.1399 - 2.1069 0.88 3308 175 0.2013 0.2230 REMARK 3 23 2.1069 - 2.0759 0.90 3297 173 0.2111 0.2220 REMARK 3 24 2.0759 - 2.0467 0.87 3267 176 0.2254 0.2800 REMARK 3 25 2.0467 - 2.0190 0.90 3232 173 0.2383 0.2922 REMARK 3 26 2.0190 - 1.9928 0.86 3183 166 0.2511 0.2765 REMARK 3 27 1.9928 - 1.9679 0.89 3321 179 0.2454 0.2674 REMARK 3 28 1.9679 - 1.9442 0.86 3138 165 0.2543 0.2501 REMARK 3 29 1.9442 - 1.9216 0.87 3198 165 0.2575 0.2916 REMARK 3 30 1.9216 - 1.9000 0.83 3081 162 0.2753 0.2828 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.41 REMARK 3 B_SOL : 58.69 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.6927 REMARK 3 B22 (A**2) : 5.3277 REMARK 3 B33 (A**2) : -2.6351 REMARK 3 B12 (A**2) : 0.2268 REMARK 3 B13 (A**2) : -0.2884 REMARK 3 B23 (A**2) : 6.3332 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5509 REMARK 3 ANGLE : 1.009 7523 REMARK 3 CHIRALITY : 0.076 859 REMARK 3 PLANARITY : 0.005 972 REMARK 3 DIHEDRAL : 14.678 1949 REMARK 3 REMARK 3 TLS DETAILS. REMARK 3 NUMBER OF TLS GROUPS: 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 14.2836 -2.7150 6.2791 REMARK 3 T TENSOR REMARK 3 T11: 0.0643 T22: 0.0544 REMARK 3 T33: 0.0781 T12: 0.0162 REMARK 3 T13: 0.0088 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 0.8575 L22: 1.9442 REMARK 3 L33: 0.9272 L12: 0.4534 REMARK 3 L13: 0.0899 L23: 0.2597 REMARK 3 S TENSOR REMARK 3 S11: 0.0709 S12: -0.0236 S13: 0.0336 REMARK 3 S21: 0.0587 S22: -0.0113 S23: 0.1193 REMARK 3 S31: -0.1231 S32: -0.0608 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 12.6482 -15.4043 24.7593 REMARK 3 T TENSOR REMARK 3 T11: 0.0955 T22: 0.1258 REMARK 3 T33: 0.1498 T12: -0.0030 REMARK 3 T13: -0.0002 T23: 0.0396 REMARK 3 L TENSOR REMARK 3 L11: 1.2309 L22: 0.8308 REMARK 3 L33: 1.2322 L12: 0.1619 REMARK 3 L13: 0.4369 L23: 0.6624 REMARK 3 S TENSOR REMARK 3 S11: 0.0401 S12: -0.1200 S13: -0.0707 REMARK 3 S21: 0.0769 S22: 0.0111 S23: 0.1063 REMARK 3 S31: 0.1453 S32: -0.0541 S33: -0.0001 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -14.3369 12.4612 -25.8406 REMARK 3 T TENSOR REMARK 3 T11: 0.0925 T22: 0.1115 REMARK 3 T33: 0.0926 T12: 0.0386 REMARK 3 T13: 0.0008 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 1.1711 L22: 1.4975 REMARK 3 L33: 1.5409 L12: 0.4768 REMARK 3 L13: 0.4560 L23: 0.5080 REMARK 3 S TENSOR REMARK 3 S11: 0.0886 S12: 0.0745 S13: -0.0659 REMARK 3 S21: -0.1017 S22: -0.0170 S23: -0.0575 REMARK 3 S31: 0.1489 S32: 0.1662 S33: 0.0001 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): -12.6406 5.5066 -4.3003 REMARK 3 T TENSOR REMARK 3 T11: 0.0703 T22: 0.1411 REMARK 3 T33: 0.0736 T12: -0.0026 REMARK 3 T13: -0.0068 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 1.0325 L22: 1.3992 REMARK 3 L33: 0.5349 L12: 0.5126 REMARK 3 L13: -0.2342 L23: -0.2452 REMARK 3 S TENSOR REMARK 3 S11: 0.0641 S12: -0.0297 S13: -0.0118 REMARK 3 S21: 0.1690 S22: -0.0176 S23: -0.0582 REMARK 3 S31: -0.0036 S32: 0.1099 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS. REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN C REMARK 3 ATOM PAIRS NUMBER : 1292 REMARK 3 RMSD : 0.041 REMARK 3 REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN B REMARK 3 SELECTION : CHAIN D REMARK 3 ATOM PAIRS NUMBER : 1326 REMARK 3 RMSD : 0.037 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. ATOM RECORDS CONTAIN ISOTROPIC EQUIVALENTS REMARK 3 OF THE SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORDS REMARK 3 CONTAIN SUM OF TLS AND RESIDUAL U FACTORS. REMARK 4 REMARK 4 2V57 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-APR-09. REMARK 100 THE PDBE ID CODE IS EBI-36498. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56578 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.90 REMARK 200 RESOLUTION RANGE LOW (A) : 48.30 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 2.1 REMARK 200 R MERGE (I) : 0.05 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.40 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.1 REMARK 200 R MERGE FOR SHELL (I) : 0.38 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.40 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M (NH4)2SO4, 5% ISOPROPANOL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.03 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.55 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 PRO A 4 REMARK 465 SER A 5 REMARK 465 ILE A 6 REMARK 465 GLU A 7 REMARK 465 SER A 8 REMARK 465 GLY A 9 REMARK 465 ALA A 10 REMARK 465 ARG A 11 REMARK 465 THR A 137 REMARK 465 GLU A 138 REMARK 465 ARG A 139 REMARK 465 PRO A 140 REMARK 465 GLU A 141 REMARK 465 ARG A 188 REMARK 465 THR A 189 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 SER B 3 REMARK 465 PRO B 4 REMARK 465 SER B 5 REMARK 465 ILE B 6 REMARK 465 GLU B 7 REMARK 465 SER B 8 REMARK 465 PRO B 140 REMARK 465 GLU B 141 REMARK 465 PRO B 187 REMARK 465 ARG B 188 REMARK 465 THR B 189 REMARK 465 GLY C 0 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 SER C 3 REMARK 465 PRO C 4 REMARK 465 SER C 5 REMARK 465 ILE C 6 REMARK 465 GLU C 7 REMARK 465 SER C 8 REMARK 465 GLY C 9 REMARK 465 THR C 137 REMARK 465 GLU C 138 REMARK 465 ARG C 139 REMARK 465 PRO C 140 REMARK 465 GLU C 141 REMARK 465 PRO C 187 REMARK 465 ARG C 188 REMARK 465 THR C 189 REMARK 465 GLY D 0 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 SER D 3 REMARK 465 PRO D 4 REMARK 465 SER D 5 REMARK 465 ILE D 6 REMARK 465 GLU D 7 REMARK 465 SER D 8 REMARK 465 PRO D 140 REMARK 465 GLU D 141 REMARK 465 PRO D 187 REMARK 465 ARG D 188 REMARK 465 THR D 189 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 GLU A 116 CG CD OE1 OE2 REMARK 470 ARG B 16 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 78 CG OD1 OD2 REMARK 470 ARG B 139 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 12 CG CD OE1 OE2 REMARK 470 ARG C 13 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 138 CG CD OE1 OE2 REMARK 470 ARG D 139 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 45 - O HOH B 2019 2.18 REMARK 500 OE2 GLU D 75 - O HOH D 2038 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 181 -7.28 -153.43 REMARK 500 ASP D 78 62.05 39.57 REMARK 500 SER D 181 -8.52 -152.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PRL C1187 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PRL A1188 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D1187 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1187 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C1188 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D1188 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1188 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D1189 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A1189 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA C1189 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WGB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TETR-LIKE REMARK 900 TRANSCRIPTIONAL REGULATOR LFRR FROM REMARK 900 MYCOBACTERIUM SMEGMATIS REMARK 999 REMARK 999 SEQUENCE REMARK 999 GLY1 IS A CLONING ARTIFACT DBREF 2V57 A 0 0 PDB 2V57 2V57 0 0 DBREF 2V57 A 1 189 UNP Q58L87 Q58L87_MYCSM 1 189 DBREF 2V57 B 0 0 PDB 2V57 2V57 0 0 DBREF 2V57 B 1 189 UNP Q58L87 Q58L87_MYCSM 1 189 DBREF 2V57 C 0 0 PDB 2V57 2V57 0 0 DBREF 2V57 C 1 189 UNP Q58L87 Q58L87_MYCSM 1 189 DBREF 2V57 D 0 0 PDB 2V57 2V57 0 0 DBREF 2V57 D 1 189 UNP Q58L87 Q58L87_MYCSM 1 189 SEQRES 1 A 190 GLY MET THR SER PRO SER ILE GLU SER GLY ALA ARG GLU SEQRES 2 A 190 ARG THR ARG ARG ALA ILE LEU ASP ALA ALA MET LEU VAL SEQRES 3 A 190 LEU ALA ASP HIS PRO THR ALA ALA LEU GLY ASP ILE ALA SEQRES 4 A 190 ALA ALA ALA GLY VAL GLY ARG SER THR VAL HIS ARG TYR SEQRES 5 A 190 TYR PRO GLU ARG THR ASP LEU LEU ARG ALA LEU ALA ARG SEQRES 6 A 190 HIS VAL HIS ASP LEU SER ASN ALA ALA ILE GLU ARG ALA SEQRES 7 A 190 ASP PRO THR SER GLY PRO VAL ASP ALA ALA LEU ARG ARG SEQRES 8 A 190 VAL VAL GLU SER GLN LEU ASP LEU GLY PRO ILE VAL LEU SEQRES 9 A 190 PHE VAL TYR TYR GLU PRO SER ILE LEU ALA ASP PRO GLU SEQRES 10 A 190 LEU ALA ALA TYR PHE ASP ILE GLY ASP GLU ALA ILE VAL SEQRES 11 A 190 GLU VAL LEU ASN ARG ALA SER THR GLU ARG PRO GLU TYR SEQRES 12 A 190 PRO PRO GLY TRP ALA ARG ARG VAL PHE TRP ALA LEU MET SEQRES 13 A 190 GLN ALA GLY TYR GLU ALA ALA LYS ASP GLY MET PRO ARG SEQRES 14 A 190 HIS GLN ILE VAL ASP ALA ILE MET THR SER LEU THR SER SEQRES 15 A 190 GLY ILE ILE THR LEU PRO ARG THR SEQRES 1 B 190 GLY MET THR SER PRO SER ILE GLU SER GLY ALA ARG GLU SEQRES 2 B 190 ARG THR ARG ARG ALA ILE LEU ASP ALA ALA MET LEU VAL SEQRES 3 B 190 LEU ALA ASP HIS PRO THR ALA ALA LEU GLY ASP ILE ALA SEQRES 4 B 190 ALA ALA ALA GLY VAL GLY ARG SER THR VAL HIS ARG TYR SEQRES 5 B 190 TYR PRO GLU ARG THR ASP LEU LEU ARG ALA LEU ALA ARG SEQRES 6 B 190 HIS VAL HIS ASP LEU SER ASN ALA ALA ILE GLU ARG ALA SEQRES 7 B 190 ASP PRO THR SER GLY PRO VAL ASP ALA ALA LEU ARG ARG SEQRES 8 B 190 VAL VAL GLU SER GLN LEU ASP LEU GLY PRO ILE VAL LEU SEQRES 9 B 190 PHE VAL TYR TYR GLU PRO SER ILE LEU ALA ASP PRO GLU SEQRES 10 B 190 LEU ALA ALA TYR PHE ASP ILE GLY ASP GLU ALA ILE VAL SEQRES 11 B 190 GLU VAL LEU ASN ARG ALA SER THR GLU ARG PRO GLU TYR SEQRES 12 B 190 PRO PRO GLY TRP ALA ARG ARG VAL PHE TRP ALA LEU MET SEQRES 13 B 190 GLN ALA GLY TYR GLU ALA ALA LYS ASP GLY MET PRO ARG SEQRES 14 B 190 HIS GLN ILE VAL ASP ALA ILE MET THR SER LEU THR SER SEQRES 15 B 190 GLY ILE ILE THR LEU PRO ARG THR SEQRES 1 C 190 GLY MET THR SER PRO SER ILE GLU SER GLY ALA ARG GLU SEQRES 2 C 190 ARG THR ARG ARG ALA ILE LEU ASP ALA ALA MET LEU VAL SEQRES 3 C 190 LEU ALA ASP HIS PRO THR ALA ALA LEU GLY ASP ILE ALA SEQRES 4 C 190 ALA ALA ALA GLY VAL GLY ARG SER THR VAL HIS ARG TYR SEQRES 5 C 190 TYR PRO GLU ARG THR ASP LEU LEU ARG ALA LEU ALA ARG SEQRES 6 C 190 HIS VAL HIS ASP LEU SER ASN ALA ALA ILE GLU ARG ALA SEQRES 7 C 190 ASP PRO THR SER GLY PRO VAL ASP ALA ALA LEU ARG ARG SEQRES 8 C 190 VAL VAL GLU SER GLN LEU ASP LEU GLY PRO ILE VAL LEU SEQRES 9 C 190 PHE VAL TYR TYR GLU PRO SER ILE LEU ALA ASP PRO GLU SEQRES 10 C 190 LEU ALA ALA TYR PHE ASP ILE GLY ASP GLU ALA ILE VAL SEQRES 11 C 190 GLU VAL LEU ASN ARG ALA SER THR GLU ARG PRO GLU TYR SEQRES 12 C 190 PRO PRO GLY TRP ALA ARG ARG VAL PHE TRP ALA LEU MET SEQRES 13 C 190 GLN ALA GLY TYR GLU ALA ALA LYS ASP GLY MET PRO ARG SEQRES 14 C 190 HIS GLN ILE VAL ASP ALA ILE MET THR SER LEU THR SER SEQRES 15 C 190 GLY ILE ILE THR LEU PRO ARG THR SEQRES 1 D 190 GLY MET THR SER PRO SER ILE GLU SER GLY ALA ARG GLU SEQRES 2 D 190 ARG THR ARG ARG ALA ILE LEU ASP ALA ALA MET LEU VAL SEQRES 3 D 190 LEU ALA ASP HIS PRO THR ALA ALA LEU GLY ASP ILE ALA SEQRES 4 D 190 ALA ALA ALA GLY VAL GLY ARG SER THR VAL HIS ARG TYR SEQRES 5 D 190 TYR PRO GLU ARG THR ASP LEU LEU ARG ALA LEU ALA ARG SEQRES 6 D 190 HIS VAL HIS ASP LEU SER ASN ALA ALA ILE GLU ARG ALA SEQRES 7 D 190 ASP PRO THR SER GLY PRO VAL ASP ALA ALA LEU ARG ARG SEQRES 8 D 190 VAL VAL GLU SER GLN LEU ASP LEU GLY PRO ILE VAL LEU SEQRES 9 D 190 PHE VAL TYR TYR GLU PRO SER ILE LEU ALA ASP PRO GLU SEQRES 10 D 190 LEU ALA ALA TYR PHE ASP ILE GLY ASP GLU ALA ILE VAL SEQRES 11 D 190 GLU VAL LEU ASN ARG ALA SER THR GLU ARG PRO GLU TYR SEQRES 12 D 190 PRO PRO GLY TRP ALA ARG ARG VAL PHE TRP ALA LEU MET SEQRES 13 D 190 GLN ALA GLY TYR GLU ALA ALA LYS ASP GLY MET PRO ARG SEQRES 14 D 190 HIS GLN ILE VAL ASP ALA ILE MET THR SER LEU THR SER SEQRES 15 D 190 GLY ILE ILE THR LEU PRO ARG THR HET PRL C1187 16 HET PRL A1188 16 HET SO4 D1187 5 HET SO4 B1187 5 HET SO4 C1188 5 HET SO4 D1188 5 HET SO4 B1188 5 HET SO4 D1189 5 HET IPA A1189 4 HET IPA C1189 4 HETNAM IPA ISOPROPYL ALCOHOL HETNAM SO4 SULFATE ION HETNAM PRL PROFLAVIN FORMUL 5 IPA 2(C3 H8 O) FORMUL 6 SO4 6(O4 S 2-) FORMUL 7 PRL 2(C13 H11 N3) FORMUL 8 HOH *374(H2 O) HELIX 1 1 GLU A 12 ALA A 27 1 16 HELIX 2 2 ALA A 33 ALA A 41 1 9 HELIX 3 3 GLY A 44 TYR A 52 1 9 HELIX 4 4 GLU A 54 ASP A 78 1 25 HELIX 5 5 PRO A 83 ASP A 97 1 15 HELIX 6 6 PRO A 100 GLU A 108 1 9 HELIX 7 7 ASP A 114 ASP A 122 1 9 HELIX 8 8 ASP A 125 ALA A 135 1 11 HELIX 9 9 GLY A 145 ASP A 164 1 20 HELIX 10 10 PRO A 167 GLY A 182 1 16 HELIX 11 11 GLY B 9 ALA B 27 1 19 HELIX 12 12 ALA B 33 ALA B 41 1 9 HELIX 13 13 GLY B 44 TYR B 52 1 9 HELIX 14 14 GLU B 54 ALA B 77 1 24 HELIX 15 15 PRO B 83 ASP B 97 1 15 HELIX 16 16 PRO B 100 TYR B 106 1 7 HELIX 17 17 TYR B 107 LEU B 112 1 6 HELIX 18 18 ASP B 114 ILE B 123 1 10 HELIX 19 19 GLU B 126 ARG B 134 1 9 HELIX 20 20 GLY B 145 ASP B 164 1 20 HELIX 21 21 PRO B 167 GLY B 182 1 16 HELIX 22 22 ALA C 10 ALA C 27 1 18 HELIX 23 23 ALA C 33 ALA C 41 1 9 HELIX 24 24 GLY C 44 TYR C 52 1 9 HELIX 25 25 GLU C 54 ASP C 78 1 25 HELIX 26 26 PRO C 83 ASP C 97 1 15 HELIX 27 27 PRO C 100 GLU C 108 1 9 HELIX 28 28 ASP C 114 ASP C 122 1 9 HELIX 29 29 ASP C 125 ALA C 135 1 11 HELIX 30 30 GLY C 145 ASP C 164 1 20 HELIX 31 31 PRO C 167 GLY C 182 1 16 HELIX 32 32 GLY D 9 LEU D 26 1 18 HELIX 33 33 ALA D 33 ALA D 41 1 9 HELIX 34 34 GLY D 44 TYR D 52 1 9 HELIX 35 35 GLU D 54 ALA D 77 1 24 HELIX 36 36 PRO D 83 ASP D 97 1 15 HELIX 37 37 PRO D 100 TYR D 106 1 7 HELIX 38 38 TYR D 107 LEU D 112 1 6 HELIX 39 39 ASP D 114 ILE D 123 1 10 HELIX 40 40 GLU D 126 ARG D 134 1 9 HELIX 41 41 GLY D 145 ASP D 164 1 20 HELIX 42 42 PRO D 167 GLY D 182 1 16 SITE 1 AC1 10 HIS C 67 SER C 70 ASN C 71 ILE C 74 SITE 2 AC1 10 TYR C 106 PHE C 121 ASP C 125 ARG C 148 SITE 3 AC1 10 TRP C 152 IPA C1189 SITE 1 AC2 10 HIS A 67 SER A 70 ASN A 71 ILE A 74 SITE 2 AC2 10 TYR A 106 PHE A 121 ASP A 125 ARG A 148 SITE 3 AC2 10 TRP A 152 IPA A1189 SITE 1 AC3 10 PRO A 167 ARG A 168 ARG D 15 TYR D 52 SITE 2 AC3 10 ALA D 61 ARG D 64 HOH D2024 HOH D2087 SITE 3 AC3 10 HOH D2088 HOH D2089 SITE 1 AC4 9 ARG B 15 TYR B 52 ALA B 61 ARG B 64 SITE 2 AC4 9 HOH B2031 HOH B2086 PRO C 167 ARG C 168 SITE 3 AC4 9 HOH C2089 SITE 1 AC5 9 ARG B 60 ARG B 64 ASP B 114 GLU B 116 SITE 2 AC5 9 HOH B2029 ARG C 168 HOH C2099 HOH C2100 SITE 3 AC5 9 HOH C2101 SITE 1 AC6 9 ARG A 168 ARG D 60 ARG D 64 ASP D 114 SITE 2 AC6 9 GLU D 116 HOH D2022 HOH D2090 HOH D2091 SITE 3 AC6 9 HOH D2092 SITE 1 AC7 3 ARG B 168 HIS B 169 ARG C 64 SITE 1 AC8 2 ARG D 168 HIS D 169 SITE 1 AC9 2 TRP A 152 PRL A1188 SITE 1 BC1 2 TRP C 152 PRL C1187 CRYST1 48.300 62.440 70.640 63.88 88.34 88.13 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020704 -0.000676 -0.000337 0.00000 SCALE2 0.000000 0.016024 -0.007845 0.00000 SCALE3 0.000000 0.000000 0.015769 0.00000