HEADER RECEPTOR 06-JUL-07 2V5N TITLE STRUCTURE OF HUMAN IGF2R DOMAINS 11-12 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATION-INDEPENDENT MANNOSE-6-PHOSPHATE RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DOMAINS 11 AND 12, RESIDUES 1508-1799; COMPND 5 SYNONYM: INSULIN-LIKE GROWTH FACTOR II RECEPTOR, CI MAN-6-P RECEPTOR, COMPND 6 CI-MPR, M6PR, INSULIN-LIKE GROWTH FACTOR 2 RECEPTOR, IGF-II RECEPTOR, COMPND 7 M6P/IGF2 RECEPTOR, M6P/IGF2R, 300 KDA MANNOSE 6-PHOSPHATE RECEPTOR, COMPND 8 MPR 300, MPR300, CD222 ANTIGEN; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ATCC: 95661; SOURCE 6 ORGAN: PLACENTA; SOURCE 7 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: LECR 3.2.8.1; SOURCE 10 EXPRESSION_SYSTEM_CELL_LINE: CHO; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PEE14 KEYWDS CATION INDEPENDENT MANNOSE 6-PHOSPHATE, MEMBRANE, RECEPTOR, LYSOSOME, KEYWDS 2 TRANSPORT, BETA BARREL, PHOSPHORYLATION, FIBRONECTIN TYPE II, KEYWDS 3 INSULIN-LIKE GROWTH FACTOR, GLYCOPROTEIN, TRANSMEMBRANE EXPDTA X-RAY DIFFRACTION AUTHOR J.BROWN,C.DELAINE,O.J.ZACCHEO,C.SIEBOLD,R.J.GILBERT,G.VAN BOXEL, AUTHOR 2 A.DENLEY,J.C.WALLACE,A.B.HASSAN,B.E.FORBES,E.Y.JONES REVDAT 6 29-JUL-20 2V5N 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE REVDAT 5 28-FEB-18 2V5N 1 SOURCE REMARK REVDAT 4 13-JUL-11 2V5N 1 VERSN REVDAT 3 24-FEB-09 2V5N 1 VERSN REVDAT 2 22-APR-08 2V5N 1 JRNL REMARK MASTER REVDAT 1 11-DEC-07 2V5N 0 JRNL AUTH J.BROWN,C.DELAINE,O.J.ZACCHEO,C.SIEBOLD,R.J.GILBERT, JRNL AUTH 2 G.VAN BOXEL,A.DENLEY,J.C.WALLACE,A.B.HASSAN,B.E.FORBES, JRNL AUTH 3 E.Y.JONES JRNL TITL STRUCTURE AND FUNCTIONAL ANALYSIS OF THE IGF-II/IGF2R JRNL TITL 2 INTERACTION JRNL REF EMBO J. V. 27 265 2008 JRNL REFN ISSN 0261-4189 JRNL PMID 18046459 JRNL DOI 10.1038/SJ.EMBOJ.7601938 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 5495 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.259 REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.317 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.700 REMARK 3 FREE R VALUE TEST SET COUNT : 590 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 373 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.3480 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.3880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2017 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 97.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.30000 REMARK 3 B22 (A**2) : 4.30000 REMARK 3 B33 (A**2) : -6.45000 REMARK 3 B12 (A**2) : 2.15000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.642 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.505 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 64.678 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.908 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.867 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2109 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2887 ; 1.132 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 269 ; 6.207 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 77 ;41.037 ;23.896 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 306 ;19.264 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;19.327 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 325 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1625 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 834 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1422 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 67 ; 0.142 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 48 ; 0.194 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.247 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1515 A 1650 REMARK 3 ORIGIN FOR THE GROUP (A): 18.8495 25.5542 28.6187 REMARK 3 T TENSOR REMARK 3 T11: -0.0624 T22: -0.3830 REMARK 3 T33: -0.2409 T12: 0.2303 REMARK 3 T13: 0.1897 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 6.9369 L22: 5.5426 REMARK 3 L33: 5.6920 L12: -0.4006 REMARK 3 L13: 2.2846 L23: 0.1386 REMARK 3 S TENSOR REMARK 3 S11: -0.2881 S12: -0.2869 S13: -0.0884 REMARK 3 S21: 0.6603 S22: 0.3271 S23: 0.9651 REMARK 3 S31: -0.6230 S32: -0.0754 S33: -0.0390 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1651 A 1797 REMARK 3 ORIGIN FOR THE GROUP (A): 19.0797 35.0777 3.2419 REMARK 3 T TENSOR REMARK 3 T11: -0.2917 T22: -0.1814 REMARK 3 T33: -0.1807 T12: 0.1163 REMARK 3 T13: 0.0179 T23: -0.0541 REMARK 3 L TENSOR REMARK 3 L11: 3.2157 L22: 5.8955 REMARK 3 L33: 7.5837 L12: -0.3583 REMARK 3 L13: 1.4055 L23: -2.2797 REMARK 3 S TENSOR REMARK 3 S11: -0.1292 S12: 0.1942 S13: 0.2713 REMARK 3 S21: -0.6676 S22: 0.4533 S23: 0.0853 REMARK 3 S31: 0.1051 S32: 0.5940 S33: -0.3241 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2V5N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1290033101. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6123 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 19.60 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 19.50 REMARK 200 R MERGE FOR SHELL (I) : 0.74000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: HKL2MAP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM SODIUM TARTRATE, 20% REMARK 280 (W/V) PEG 3350, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.85633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 179.71267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 134.78450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 224.64083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.92817 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 89.85633 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 179.71267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 224.64083 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 134.78450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 44.92817 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1508 REMARK 465 LYS A 1509 REMARK 465 SER A 1510 REMARK 465 ASN A 1511 REMARK 465 GLU A 1512 REMARK 465 HIS A 1513 REMARK 465 ASP A 1514 REMARK 465 ASP A 1515 REMARK 465 ASP A 1677 REMARK 465 GLU A 1678 REMARK 465 SER A 1679 REMARK 465 GLU A 1680 REMARK 465 ASP A 1681 REMARK 465 ASP A 1682 REMARK 465 ALA A 1683 REMARK 465 SER A 1684 REMARK 465 ASP A 1685 REMARK 465 THR A 1686 REMARK 465 GLU A 1798 REMARK 465 VAL A 1799 REMARK 465 LYS A 1800 REMARK 465 HIS A 1801 REMARK 465 HIS A 1802 REMARK 465 HIS A 1803 REMARK 465 HIS A 1804 REMARK 465 HIS A 1805 REMARK 465 HIS A 1806 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A1544 CG CD OE1 OE2 REMARK 470 TYR A1676 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A1768 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1776 CG CD CE NZ REMARK 470 ARG A1779 CG CD NE CZ NH1 NH2 REMARK 470 GLU A1782 CG CD OE1 OE2 REMARK 470 GLU A1788 CG CD OE1 OE2 REMARK 470 THR A1791 OG1 CG2 REMARK 470 VAL A1793 CG1 CG2 REMARK 470 VAL A1794 CG1 CG2 REMARK 470 ASP A1797 CA C O CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A1553 112.62 61.55 REMARK 500 LEU A1581 106.50 -5.65 REMARK 500 ASP A1585 64.90 61.59 REMARK 500 ASP A1594 77.65 68.91 REMARK 500 SER A1600 -95.66 -72.64 REMARK 500 SER A1602 -86.66 -44.39 REMARK 500 ALA A1618 -70.96 -52.70 REMARK 500 THR A1621 -73.28 -67.53 REMARK 500 GLU A1647 -72.43 -121.80 REMARK 500 THR A1650 105.95 -57.29 REMARK 500 PRO A1665 -19.92 -49.61 REMARK 500 GLU A1674 -141.90 -73.69 REMARK 500 ALA A1675 18.69 -156.91 REMARK 500 CYS A1695 -23.32 69.98 REMARK 500 HIS A1702 112.64 -27.82 REMARK 500 ASP A1718 17.87 52.15 REMARK 500 LEU A1778 -75.31 -84.36 REMARK 500 SER A1781 -168.04 -111.24 REMARK 500 VAL A1793 -17.62 -144.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1E6F RELATED DB: PDB REMARK 900 HUMAN MIR-RECEPTOR, REPEAT 11 REMARK 900 RELATED ID: 1GP0 RELATED DB: PDB REMARK 900 STRUCTURE OF A FUNCTIONAL IGF2R FRAGMENT DETERMINED FROM ANOMALOUS REMARK 900 SCATTERING OF SULPHUR REMARK 900 RELATED ID: 1GP3 RELATED DB: PDB REMARK 900 STRUCTURE OF A FUNCTIONAL IGF2R FRAGMENT DETERMINED FROM ANOMALOUS REMARK 900 SCATTERING OF SULPHUR REMARK 900 RELATED ID: 1GQB RELATED DB: PDB REMARK 900 HUMAN MIR-RECEPTOR, REPEAT 11 REMARK 900 RELATED ID: 1JPL RELATED DB: PDB REMARK 900 GGA3 VHS DOMAIN COMPLEXED WITH C-TERMINAL PEPTIDE FROMCATION- REMARK 900 INDEPENDENT MANNOSE 6- PHOSPHATE RECEPTOR REMARK 900 RELATED ID: 1JWG RELATED DB: PDB REMARK 900 VHS DOMAIN OF HUMAN GGA1 COMPLEXED WITH CATION-INDEPENDENTM6PR C- REMARK 900 TERMINAL PEPTIDE REMARK 900 RELATED ID: 1LF8 RELATED DB: PDB REMARK 900 COMPLEX OF GGA3-VHS DOMAIN AND CI-MPR C -TERMINALPHOSPHOPEPTIDE REMARK 900 RELATED ID: 2CNJ RELATED DB: PDB REMARK 900 NMR STUDIES ON THE INTERACTION OF INSULIN- GROWTH FACTOR II (IGF-II) REMARK 900 WITH IGF2R DOMAIN 11 REMARK 900 RELATED ID: 2V5O RELATED DB: PDB REMARK 900 RELATED ID: 2V5P RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONFLICT INDICATED IN THE SEQADV RECORDS BELOW HAS BEEN REMARK 999 DESCRIBED IN UNIPROT ENTRY P11717 UNDER REFERENCE WITH REMARK 999 PUBMED ID: 2957598. DBREF 2V5N A 1508 1799 UNP P11717 MPRI_HUMAN 1508 1799 DBREF 2V5N A 1800 1806 PDB 2V5N 2V5N 1800 1806 SEQADV 2V5N ALA A 1703 UNP P11717 GLY 1703 CONFLICT SEQRES 1 A 299 MSE LYS SER ASN GLU HIS ASP ASP CYS GLN VAL THR ASN SEQRES 2 A 299 PRO SER THR GLY HIS LEU PHE ASP LEU SER SER LEU SER SEQRES 3 A 299 GLY ARG ALA GLY PHE THR ALA ALA TYR SER GLU LYS GLY SEQRES 4 A 299 LEU VAL TYR MSE SER ILE CYS GLY GLU ASN GLU ASN CYS SEQRES 5 A 299 PRO PRO GLY VAL GLY ALA CYS PHE GLY GLN THR ARG ILE SEQRES 6 A 299 SER VAL GLY LYS ALA ASN LYS ARG LEU ARG TYR VAL ASP SEQRES 7 A 299 GLN VAL LEU GLN LEU VAL TYR LYS ASP GLY SER PRO CYS SEQRES 8 A 299 PRO SER LYS SER GLY LEU SER TYR LYS SER VAL ILE SER SEQRES 9 A 299 PHE VAL CYS ARG PRO GLU ALA GLY PRO THR ASN ARG PRO SEQRES 10 A 299 MSE LEU ILE SER LEU ASP LYS GLN THR CYS THR LEU PHE SEQRES 11 A 299 PHE SER TRP HIS THR PRO LEU ALA CYS GLU GLN ALA THR SEQRES 12 A 299 GLU CYS SER VAL ARG ASN GLY SER SER ILE VAL ASP LEU SEQRES 13 A 299 SER PRO LEU ILE HIS ARG THR GLY GLY TYR GLU ALA TYR SEQRES 14 A 299 ASP GLU SER GLU ASP ASP ALA SER ASP THR ASN PRO ASP SEQRES 15 A 299 PHE TYR ILE ASN ILE CYS GLN PRO LEU ASN PRO MSE HIS SEQRES 16 A 299 ALA VAL PRO CYS PRO ALA GLY ALA ALA VAL CYS LYS VAL SEQRES 17 A 299 PRO ILE ASP GLY PRO PRO ILE ASP ILE GLY ARG VAL ALA SEQRES 18 A 299 GLY PRO PRO ILE LEU ASN PRO ILE ALA ASN GLU ILE TYR SEQRES 19 A 299 LEU ASN PHE GLU SER SER THR PRO CYS LEU ALA ASP LYS SEQRES 20 A 299 HIS PHE ASN TYR THR SER LEU ILE ALA PHE HIS CYS LYS SEQRES 21 A 299 ARG GLY VAL SER MSE GLY THR PRO LYS LEU LEU ARG THR SEQRES 22 A 299 SER GLU CYS ASP PHE VAL PHE GLU TRP GLU THR PRO VAL SEQRES 23 A 299 VAL CYS PRO ASP GLU VAL LYS HIS HIS HIS HIS HIS HIS MODRES 2V5N ASN A 1656 ASN GLYCOSYLATION SITE MODRES 2V5N ASN A 1757 ASN GLYCOSYLATION SITE MODRES 2V5N MSE A 1550 MET SELENOMETHIONINE MODRES 2V5N MSE A 1625 MET SELENOMETHIONINE MODRES 2V5N MSE A 1701 MET SELENOMETHIONINE MODRES 2V5N MSE A 1772 MET SELENOMETHIONINE HET MSE A1550 8 HET MSE A1625 8 HET MSE A1701 8 HET MSE A1772 8 HET NAG A2797 14 HET NAG A2798 14 HETNAM MSE SELENOMETHIONINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 NAG 2(C8 H15 N O6) HELIX 1 1 SER A 1530 SER A 1533 5 4 HELIX 2 2 PRO A 1643 CYS A 1646 5 4 HELIX 3 3 SER A 1664 LEU A 1666 5 3 HELIX 4 4 PRO A 1792 CYS A 1795 5 4 SHEET 1 AA 2 GLN A1517 THR A1519 0 SHEET 2 AA 2 LEU A1526 ASP A1528 -1 O PHE A1527 N VAL A1518 SHEET 1 AB 4 PHE A1538 TYR A1542 0 SHEET 2 AB 4 GLY A1546 MSE A1550 -1 O GLY A1546 N TYR A1542 SHEET 3 AB 4 VAL A1563 PHE A1567 -1 O CYS A1566 N TYR A1549 SHEET 4 AB 4 ILE A1572 LYS A1576 -1 N VAL A1574 O ALA A1565 SHEET 1 AC 5 LEU A1581 VAL A1584 0 SHEET 2 AC 5 VAL A1587 TYR A1592 -1 O VAL A1587 N VAL A1584 SHEET 3 AC 5 LYS A1607 CYS A1614 -1 O ILE A1610 N LEU A1590 SHEET 4 AC 5 THR A1635 THR A1642 1 O LEU A1636 N VAL A1609 SHEET 5 AC 5 PRO A1624 ASP A1630 -1 O MSE A1625 N SER A1639 SHEET 1 AD 2 SER A1653 ASN A1656 0 SHEET 2 AD 2 SER A1659 ASP A1662 -1 O SER A1659 N ASN A1656 SHEET 1 AE 4 TYR A1673 ALA A1675 0 SHEET 2 AE 4 PHE A1690 ILE A1692 -1 O PHE A1690 N ALA A1675 SHEET 3 AE 4 VAL A1712 LYS A1714 -1 O CYS A1713 N TYR A1691 SHEET 4 AE 4 ILE A1722 GLY A1725 -1 O ILE A1722 N LYS A1714 SHEET 1 AF 5 ILE A1732 ASN A1734 0 SHEET 2 AF 5 GLU A1739 PHE A1744 -1 O TYR A1741 N ILE A1732 SHEET 3 AF 5 SER A1760 CYS A1766 -1 O SER A1760 N PHE A1744 SHEET 4 AF 5 PHE A1785 THR A1791 1 O PHE A1785 N LEU A1761 SHEET 5 AF 5 PRO A1775 ARG A1779 -1 O LYS A1776 N GLU A1788 SSBOND 1 CYS A 1516 CYS A 1553 1555 1555 2.04 SSBOND 2 CYS A 1559 CYS A 1566 1555 1555 2.04 SSBOND 3 CYS A 1598 CYS A 1634 1555 1555 2.02 SSBOND 4 CYS A 1614 CYS A 1646 1555 1555 2.04 SSBOND 5 CYS A 1652 CYS A 1695 1555 1555 2.04 SSBOND 6 CYS A 1706 CYS A 1713 1555 1555 2.04 SSBOND 7 CYS A 1750 CYS A 1783 1555 1555 2.04 SSBOND 8 CYS A 1766 CYS A 1795 1555 1555 2.04 LINK C TYR A1549 N MSE A1550 1555 1555 1.33 LINK C MSE A1550 N SER A1551 1555 1555 1.33 LINK C PRO A1624 N MSE A1625 1555 1555 1.33 LINK C MSE A1625 N LEU A1626 1555 1555 1.33 LINK ND2 ASN A1656 C1 NAG A2797 1555 1555 1.44 LINK C PRO A1700 N MSE A1701 1555 1555 1.33 LINK C MSE A1701 N HIS A1702 1555 1555 1.34 LINK ND2 ASN A1757 C1 NAG A2798 1555 1555 1.45 LINK C SER A1771 N MSE A1772 1555 1555 1.34 LINK C MSE A1772 N GLY A1773 1555 1555 1.33 CRYST1 64.793 64.793 269.569 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015434 0.008911 0.000000 0.00000 SCALE2 0.000000 0.017821 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003710 0.00000