HEADER HYDROLASE/HYDROLASE SUBSTRATE 10-JUL-07 2V5W TITLE CRYSTAL STRUCTURE OF HDAC8-SUBSTRATE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE DEACETYLASE 8; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HDAC8, HD8; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: GLYCYL-GLYCYL-GLYCINE; COMPND 9 CHAIN: G; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: PEPTIDIC SUBSTRATE; COMPND 13 CHAIN: I, L; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET21B; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS HISTONE DEACETYLASE, CHROMATIN REGULATOR, P53, HDAC, HDAC8, NUCLEUS, KEYWDS 2 REPRESSOR, HYDROLASE, NUCLEAR PROTEIN, PEPTIDIC SUBSTRATE, KEYWDS 3 TRANSCRIPTION REGULATION, CHROMATIN, TRANSCRIPTION, DEACETYLATION, KEYWDS 4 HYDROLASE-HYDROLASE SUBSTRATE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.DI MARCO,A.VANNINI,C.VOLPARI REVDAT 9 23-OCT-24 2V5W 1 REMARK REVDAT 8 13-DEC-23 2V5W 1 REMARK LINK REVDAT 7 29-MAY-19 2V5W 1 REMARK LINK REVDAT 6 21-DEC-16 2V5W 1 SOURCE REVDAT 5 13-JUL-11 2V5W 1 VERSN REVDAT 4 12-MAY-09 2V5W 1 HETATM REVDAT 3 24-FEB-09 2V5W 1 VERSN REVDAT 2 11-SEP-07 2V5W 1 JRNL REVDAT 1 04-SEP-07 2V5W 0 JRNL AUTH A.VANNINI,C.VOLPARI,P.GALLINARI,P.JONES,M.MATTU,A.CARFI, JRNL AUTH 2 R.DEFRANCESCO,C.STEINKUHLER,S.DI MARCO JRNL TITL SUBSTRATE BINDING TO HISTONE DEACETYLASES AS REVEALED BY JRNL TITL 2 CRYSTAL STRUCTURE OF HDAC8-SUBSTRATE COMPLEX JRNL REF EMBO REP. V. 8 879 2007 JRNL REFN ISSN 1469-221X JRNL PMID 17721440 JRNL DOI 10.1038/SJ.EMBOR.7401047 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 49636 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2651 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2690 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1990 REMARK 3 BIN FREE R VALUE SET COUNT : 158 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5819 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 746 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.06000 REMARK 3 B22 (A**2) : 0.25000 REMARK 3 B33 (A**2) : 0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.30000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.192 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.172 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.120 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.232 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5970 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 5309 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8080 ; 1.433 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12374 ; 0.914 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 738 ; 6.361 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 871 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6660 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1218 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1410 ; 0.235 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 6283 ; 0.241 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3305 ; 0.103 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 517 ; 0.177 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.176 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 37 ; 0.291 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 34 ; 0.259 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3680 ; 0.647 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5913 ; 1.188 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2290 ; 2.071 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2167 ; 3.390 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2V5W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1290033157. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53718 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 59.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.15000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1W22 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HDAC8 POINT MUTANT Y306F, IN 50 MM REMARK 280 TRIS-HCL PH 8.0, 5% GLYCEROL, 1 MM DTT, 150 MM KCL, WAS REMARK 280 CONCENTRATED TO 217 UM, RESPECTIVELY. Y306F-HDAC8 PLUS 15 MOLAR REMARK 280 EXCESSES OF SUBSTRATE, WAS CRYSTALLIZED AT RT BY THE HANGING- REMARK 280 DROP METHOD IN 50 MM TRIS-HCL PH 8.0, 50 MM MGCL2, 10% PEG 4,000, REMARK 280 2 MM TRI(2-CARBOXYETHYL)PHOSPHIN (TCEP) AND 30 MM GLYCYL-GLYCYL- REMARK 280 GLYCINE., VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 75.90050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 1280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 1760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, G, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, TYR 306 TO PHE REMARK 400 ENGINEERED RESIDUE IN CHAIN B, TYR 306 TO PHE REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLU A 3 REMARK 465 PRO A 4 REMARK 465 GLU A 5 REMARK 465 GLU A 6 REMARK 465 PRO A 7 REMARK 465 ALA A 8 REMARK 465 ASP A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 GLN A 12 REMARK 465 SER A 13 REMARK 465 LEU A 14 REMARK 465 ILE A 378 REMARK 465 GLU A 379 REMARK 465 GLY A 380 REMARK 465 ARG A 381 REMARK 465 SER A 382 REMARK 465 HIS A 383 REMARK 465 HIS A 384 REMARK 465 HIS A 385 REMARK 465 HIS A 386 REMARK 465 HIS A 387 REMARK 465 HIS A 388 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 GLU B 3 REMARK 465 PRO B 4 REMARK 465 GLU B 5 REMARK 465 GLU B 6 REMARK 465 PRO B 7 REMARK 465 ALA B 8 REMARK 465 ASP B 9 REMARK 465 VAL B 377 REMARK 465 ILE B 378 REMARK 465 GLU B 379 REMARK 465 GLY B 380 REMARK 465 ARG B 381 REMARK 465 SER B 382 REMARK 465 HIS B 383 REMARK 465 HIS B 384 REMARK 465 HIS B 385 REMARK 465 HIS B 386 REMARK 465 HIS B 387 REMARK 465 HIS B 388 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP B 216 CG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2079 O HOH A 2084 2.05 REMARK 500 O HOH B 2231 O HOH B 2234 2.16 REMARK 500 O HOH B 2104 O HOH B 2105 2.17 REMARK 500 O HOH A 2034 O HOH A 2079 2.18 REMARK 500 O HOH A 2209 O HOH A 2210 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 88 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 128 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 213 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 313 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP B 87 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 128 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP B 213 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 34 57.36 -143.97 REMARK 500 SER A 276 -78.76 -123.22 REMARK 500 ASN A 278 43.79 -143.02 REMARK 500 ILE B 34 52.91 -143.69 REMARK 500 LYS B 36 -1.11 67.66 REMARK 500 ASP B 178 153.58 -49.15 REMARK 500 SER B 276 -75.56 -119.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS I 3 ALY I 4 148.72 REMARK 500 HIS L 3 ALY L 4 148.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2025 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH A2033 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A2146 DISTANCE = 7.50 ANGSTROMS REMARK 525 HOH B2035 DISTANCE = 7.89 ANGSTROMS REMARK 525 HOH B2083 DISTANCE = 6.25 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1378 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 176 OD1 REMARK 620 2 ASP A 176 O 72.1 REMARK 620 3 ASP A 178 O 102.1 107.2 REMARK 620 4 HIS A 180 O 88.0 159.5 81.5 REMARK 620 5 SER A 199 OG 103.7 86.8 153.4 93.2 REMARK 620 6 LEU A 200 O 146.8 79.4 70.3 121.1 91.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1380 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 178 OD2 REMARK 620 2 HIS A 180 ND1 106.5 REMARK 620 3 ASP A 267 OD2 110.4 98.6 REMARK 620 4 ALY I 5 OH 136.2 109.5 88.1 REMARK 620 5 HOH I2358 O 82.8 93.0 158.8 71.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1379 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 189 O REMARK 620 2 THR A 192 O 75.3 REMARK 620 3 VAL A 195 O 111.5 81.7 REMARK 620 4 TYR A 225 O 157.6 124.6 83.8 REMARK 620 5 HOH A2215 O 92.5 95.9 154.2 76.4 REMARK 620 6 HOH A2220 O 75.7 151.0 110.9 83.6 83.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B1377 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 176 O REMARK 620 2 ASP B 176 OD1 73.5 REMARK 620 3 ASP B 178 O 105.5 103.5 REMARK 620 4 HIS B 180 O 163.8 92.0 84.5 REMARK 620 5 SER B 199 OG 84.6 103.1 153.3 92.0 REMARK 620 6 LEU B 200 O 75.8 144.6 68.3 120.2 91.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1379 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 178 OD2 REMARK 620 2 HIS B 180 ND1 103.7 REMARK 620 3 ASP B 267 OD2 103.3 96.8 REMARK 620 4 ALY L 5 OH 132.9 115.9 96.6 REMARK 620 5 HOH L2356 O 84.1 96.9 162.5 67.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B1378 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B 189 O REMARK 620 2 THR B 192 O 76.3 REMARK 620 3 VAL B 195 O 113.6 84.7 REMARK 620 4 TYR B 225 O 159.2 119.8 82.6 REMARK 620 5 HOH B2220 O 93.5 94.1 151.6 73.4 REMARK 620 6 HOH B2225 O 75.1 151.1 110.5 87.3 83.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 1378 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 1379 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1380 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 1377 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 1378 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1379 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2V5X RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HDAC8-SUBSTRATE COMPLEX REMARK 999 REMARK 999 SEQUENCE REMARK 999 Y306 MUTATED TO F306. IEGRSHHHHHH ADDED AT THE C-TERMINUS DBREF 2V5W A 1 377 UNP Q9BY41 HDAC8_HUMAN 1 377 DBREF 2V5W A 378 388 PDB 2V5W 2V5W 378 388 DBREF 2V5W B 1 377 UNP Q9BY41 HDAC8_HUMAN 1 377 DBREF 2V5W B 378 388 PDB 2V5W 2V5W 378 388 DBREF 2V5W G 1 3 PDB 2V5W 2V5W 1 3 DBREF 2V5W I 1 5 PDB 2V5W 2V5W 1 5 DBREF 2V5W L 1 5 PDB 2V5W 2V5W 1 5 SEQADV 2V5W PHE A 306 UNP Q9BY41 TYR 306 ENGINEERED MUTATION SEQADV 2V5W PHE B 306 UNP Q9BY41 TYR 306 ENGINEERED MUTATION SEQRES 1 A 388 MET GLU GLU PRO GLU GLU PRO ALA ASP SER GLY GLN SER SEQRES 2 A 388 LEU VAL PRO VAL TYR ILE TYR SER PRO GLU TYR VAL SER SEQRES 3 A 388 MET CYS ASP SER LEU ALA LYS ILE PRO LYS ARG ALA SER SEQRES 4 A 388 MET VAL HIS SER LEU ILE GLU ALA TYR ALA LEU HIS LYS SEQRES 5 A 388 GLN MET ARG ILE VAL LYS PRO LYS VAL ALA SER MET GLU SEQRES 6 A 388 GLU MET ALA THR PHE HIS THR ASP ALA TYR LEU GLN HIS SEQRES 7 A 388 LEU GLN LYS VAL SER GLN GLU GLY ASP ASP ASP HIS PRO SEQRES 8 A 388 ASP SER ILE GLU TYR GLY LEU GLY TYR ASP CYS PRO ALA SEQRES 9 A 388 THR GLU GLY ILE PHE ASP TYR ALA ALA ALA ILE GLY GLY SEQRES 10 A 388 ALA THR ILE THR ALA ALA GLN CYS LEU ILE ASP GLY MET SEQRES 11 A 388 CYS LYS VAL ALA ILE ASN TRP SER GLY GLY TRP HIS HIS SEQRES 12 A 388 ALA LYS LYS ASP GLU ALA SER GLY PHE CYS TYR LEU ASN SEQRES 13 A 388 ASP ALA VAL LEU GLY ILE LEU ARG LEU ARG ARG LYS PHE SEQRES 14 A 388 GLU ARG ILE LEU TYR VAL ASP LEU ASP LEU HIS HIS GLY SEQRES 15 A 388 ASP GLY VAL GLU ASP ALA PHE SER PHE THR SER LYS VAL SEQRES 16 A 388 MET THR VAL SER LEU HIS LYS PHE SER PRO GLY PHE PHE SEQRES 17 A 388 PRO GLY THR GLY ASP VAL SER ASP VAL GLY LEU GLY LYS SEQRES 18 A 388 GLY ARG TYR TYR SER VAL ASN VAL PRO ILE GLN ASP GLY SEQRES 19 A 388 ILE GLN ASP GLU LYS TYR TYR GLN ILE CYS GLU SER VAL SEQRES 20 A 388 LEU LYS GLU VAL TYR GLN ALA PHE ASN PRO LYS ALA VAL SEQRES 21 A 388 VAL LEU GLN LEU GLY ALA ASP THR ILE ALA GLY ASP PRO SEQRES 22 A 388 MET CYS SER PHE ASN MET THR PRO VAL GLY ILE GLY LYS SEQRES 23 A 388 CYS LEU LYS TYR ILE LEU GLN TRP GLN LEU ALA THR LEU SEQRES 24 A 388 ILE LEU GLY GLY GLY GLY PHE ASN LEU ALA ASN THR ALA SEQRES 25 A 388 ARG CYS TRP THR TYR LEU THR GLY VAL ILE LEU GLY LYS SEQRES 26 A 388 THR LEU SER SER GLU ILE PRO ASP HIS GLU PHE PHE THR SEQRES 27 A 388 ALA TYR GLY PRO ASP TYR VAL LEU GLU ILE THR PRO SER SEQRES 28 A 388 CYS ARG PRO ASP ARG ASN GLU PRO HIS ARG ILE GLN GLN SEQRES 29 A 388 ILE LEU ASN TYR ILE LYS GLY ASN LEU LYS HIS VAL VAL SEQRES 30 A 388 ILE GLU GLY ARG SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 388 MET GLU GLU PRO GLU GLU PRO ALA ASP SER GLY GLN SER SEQRES 2 B 388 LEU VAL PRO VAL TYR ILE TYR SER PRO GLU TYR VAL SER SEQRES 3 B 388 MET CYS ASP SER LEU ALA LYS ILE PRO LYS ARG ALA SER SEQRES 4 B 388 MET VAL HIS SER LEU ILE GLU ALA TYR ALA LEU HIS LYS SEQRES 5 B 388 GLN MET ARG ILE VAL LYS PRO LYS VAL ALA SER MET GLU SEQRES 6 B 388 GLU MET ALA THR PHE HIS THR ASP ALA TYR LEU GLN HIS SEQRES 7 B 388 LEU GLN LYS VAL SER GLN GLU GLY ASP ASP ASP HIS PRO SEQRES 8 B 388 ASP SER ILE GLU TYR GLY LEU GLY TYR ASP CYS PRO ALA SEQRES 9 B 388 THR GLU GLY ILE PHE ASP TYR ALA ALA ALA ILE GLY GLY SEQRES 10 B 388 ALA THR ILE THR ALA ALA GLN CYS LEU ILE ASP GLY MET SEQRES 11 B 388 CYS LYS VAL ALA ILE ASN TRP SER GLY GLY TRP HIS HIS SEQRES 12 B 388 ALA LYS LYS ASP GLU ALA SER GLY PHE CYS TYR LEU ASN SEQRES 13 B 388 ASP ALA VAL LEU GLY ILE LEU ARG LEU ARG ARG LYS PHE SEQRES 14 B 388 GLU ARG ILE LEU TYR VAL ASP LEU ASP LEU HIS HIS GLY SEQRES 15 B 388 ASP GLY VAL GLU ASP ALA PHE SER PHE THR SER LYS VAL SEQRES 16 B 388 MET THR VAL SER LEU HIS LYS PHE SER PRO GLY PHE PHE SEQRES 17 B 388 PRO GLY THR GLY ASP VAL SER ASP VAL GLY LEU GLY LYS SEQRES 18 B 388 GLY ARG TYR TYR SER VAL ASN VAL PRO ILE GLN ASP GLY SEQRES 19 B 388 ILE GLN ASP GLU LYS TYR TYR GLN ILE CYS GLU SER VAL SEQRES 20 B 388 LEU LYS GLU VAL TYR GLN ALA PHE ASN PRO LYS ALA VAL SEQRES 21 B 388 VAL LEU GLN LEU GLY ALA ASP THR ILE ALA GLY ASP PRO SEQRES 22 B 388 MET CYS SER PHE ASN MET THR PRO VAL GLY ILE GLY LYS SEQRES 23 B 388 CYS LEU LYS TYR ILE LEU GLN TRP GLN LEU ALA THR LEU SEQRES 24 B 388 ILE LEU GLY GLY GLY GLY PHE ASN LEU ALA ASN THR ALA SEQRES 25 B 388 ARG CYS TRP THR TYR LEU THR GLY VAL ILE LEU GLY LYS SEQRES 26 B 388 THR LEU SER SER GLU ILE PRO ASP HIS GLU PHE PHE THR SEQRES 27 B 388 ALA TYR GLY PRO ASP TYR VAL LEU GLU ILE THR PRO SER SEQRES 28 B 388 CYS ARG PRO ASP ARG ASN GLU PRO HIS ARG ILE GLN GLN SEQRES 29 B 388 ILE LEU ASN TYR ILE LYS GLY ASN LEU LYS HIS VAL VAL SEQRES 30 B 388 ILE GLU GLY ARG SER HIS HIS HIS HIS HIS HIS SEQRES 1 G 3 GLY GLY GLY SEQRES 1 I 6 ACE ARG HIS ALY ALY MCM SEQRES 1 L 6 ACE ARG HIS ALY ALY MCM MODRES 2V5W ALY I 4 LYS N(6)-ACETYLLYSINE MODRES 2V5W ALY I 5 LYS N(6)-ACETYLLYSINE MODRES 2V5W ALY L 4 LYS N(6)-ACETYLLYSINE MODRES 2V5W ALY L 5 LYS N(6)-ACETYLLYSINE HET ACE I 1 3 HET ALY I 4 12 HET ALY I 5 12 HET MCM I 6 13 HET ACE L 1 3 HET ALY L 4 12 HET ALY L 5 12 HET MCM L 6 13 HET K A1378 1 HET K A1379 1 HET ZN A1380 1 HET K B1377 1 HET K B1378 1 HET ZN B1379 1 HETNAM ACE ACETYL GROUP HETNAM ALY N(6)-ACETYLLYSINE HETNAM MCM 7-AMINO-4-METHYL-CHROMEN-2-ONE HETNAM K POTASSIUM ION HETNAM ZN ZINC ION HETSYN MCM 7-AMINO-4-METHYLCOUMARIN FORMUL 4 ACE 2(C2 H4 O) FORMUL 4 ALY 4(C8 H16 N2 O3) FORMUL 4 MCM 2(C10 H9 N O2) FORMUL 6 K 4(K 1+) FORMUL 8 ZN 2(ZN 2+) FORMUL 12 HOH *746(H2 O) HELIX 1 1 SER A 21 ASP A 29 1 9 HELIX 2 2 LYS A 36 TYR A 48 1 13 HELIX 3 3 ALA A 49 MET A 54 5 6 HELIX 4 4 SER A 63 ALA A 68 1 6 HELIX 5 5 THR A 72 GLN A 84 1 13 HELIX 6 6 HIS A 90 GLY A 97 5 8 HELIX 7 7 GLY A 107 ASP A 128 1 22 HELIX 8 8 ASN A 156 ARG A 166 1 11 HELIX 9 9 GLY A 182 PHE A 189 1 8 HELIX 10 10 LEU A 219 ARG A 223 5 5 HELIX 11 11 GLN A 236 ASN A 256 1 21 HELIX 12 12 THR A 280 GLN A 293 1 14 HELIX 13 13 ASN A 307 GLY A 324 1 18 HELIX 14 14 PHE A 336 GLY A 341 5 6 HELIX 15 15 GLU A 358 HIS A 375 1 18 HELIX 16 16 SER B 21 ASP B 29 1 9 HELIX 17 17 LYS B 36 TYR B 48 1 13 HELIX 18 18 ALA B 49 MET B 54 5 6 HELIX 19 19 SER B 63 ALA B 68 1 6 HELIX 20 20 THR B 72 GLN B 84 1 13 HELIX 21 21 GLY B 107 ASP B 128 1 22 HELIX 22 22 ASN B 156 ARG B 167 1 12 HELIX 23 23 GLY B 182 PHE B 189 1 8 HELIX 24 24 LEU B 219 ARG B 223 5 5 HELIX 25 25 GLN B 236 ASN B 256 1 21 HELIX 26 26 THR B 280 GLN B 293 1 14 HELIX 27 27 ASN B 307 GLY B 324 1 18 HELIX 28 28 PHE B 336 GLY B 341 5 6 HELIX 29 29 GLU B 358 LYS B 374 1 17 SHEET 1 AA 8 ARG A 55 VAL A 57 0 SHEET 2 AA 8 VAL A 17 ILE A 19 1 O TYR A 18 N VAL A 57 SHEET 3 AA 8 VAL A 133 ASN A 136 1 O VAL A 133 N VAL A 17 SHEET 4 AA 8 ALA A 297 LEU A 301 1 O THR A 298 N ALA A 134 SHEET 5 AA 8 ALA A 259 GLN A 263 1 O VAL A 260 N LEU A 299 SHEET 6 AA 8 ILE A 172 ASP A 176 1 O LEU A 173 N VAL A 261 SHEET 7 AA 8 VAL A 195 LYS A 202 1 O MET A 196 N TYR A 174 SHEET 8 AA 8 SER A 226 ILE A 231 1 O VAL A 227 N SER A 199 SHEET 1 BA 8 ARG B 55 VAL B 57 0 SHEET 2 BA 8 VAL B 17 ILE B 19 1 O TYR B 18 N VAL B 57 SHEET 3 BA 8 VAL B 133 ASN B 136 1 O VAL B 133 N VAL B 17 SHEET 4 BA 8 ALA B 297 LEU B 301 1 O THR B 298 N ALA B 134 SHEET 5 BA 8 ALA B 259 GLN B 263 1 O VAL B 260 N LEU B 299 SHEET 6 BA 8 ILE B 172 ASP B 176 1 O LEU B 173 N VAL B 261 SHEET 7 BA 8 VAL B 195 LYS B 202 1 O MET B 196 N TYR B 174 SHEET 8 BA 8 SER B 226 ILE B 231 1 O VAL B 227 N SER B 199 LINK C ACE I 1 N ARG I 2 1555 1555 1.33 LINK C HIS I 3 N ALY I 4 1555 1555 1.33 LINK C ALY I 4 N ALY I 5 1555 1555 1.32 LINK C ALY I 5 N MCM I 6 1555 1555 1.35 LINK C ACE L 1 N ARG L 2 1555 1555 1.32 LINK C HIS L 3 N ALY L 4 1555 1555 1.32 LINK C ALY L 4 N ALY L 5 1555 1555 1.31 LINK C ALY L 5 N MCM L 6 1555 1555 1.35 LINK OD1 ASP A 176 K K A1378 1555 1555 2.80 LINK O ASP A 176 K K A1378 1555 1555 2.83 LINK O ASP A 178 K K A1378 1555 1555 2.65 LINK OD2 ASP A 178 ZN ZN A1380 1555 1555 1.97 LINK O HIS A 180 K K A1378 1555 1555 2.84 LINK ND1 HIS A 180 ZN ZN A1380 1555 1555 2.07 LINK O PHE A 189 K K A1379 1555 1555 2.71 LINK O THR A 192 K K A1379 1555 1555 2.87 LINK O VAL A 195 K K A1379 1555 1555 2.64 LINK OG SER A 199 K K A1378 1555 1555 2.90 LINK O LEU A 200 K K A1378 1555 1555 2.59 LINK O TYR A 225 K K A1379 1555 1555 2.96 LINK OD2 ASP A 267 ZN ZN A1380 1555 1555 1.96 LINK K K A1379 O HOH A2215 1555 1555 2.59 LINK K K A1379 O HOH A2220 1555 1555 2.69 LINK ZN ZN A1380 OH ALY I 5 1555 1555 2.02 LINK ZN ZN A1380 O HOH I2358 1555 1555 2.07 LINK O ASP B 176 K K B1377 1555 1555 2.82 LINK OD1 ASP B 176 K K B1377 1555 1555 2.65 LINK O ASP B 178 K K B1377 1555 1555 2.76 LINK OD2 ASP B 178 ZN ZN B1379 1555 1555 1.96 LINK O HIS B 180 K K B1377 1555 1555 2.77 LINK ND1 HIS B 180 ZN ZN B1379 1555 1555 2.07 LINK O PHE B 189 K K B1378 1555 1555 2.59 LINK O THR B 192 K K B1378 1555 1555 2.88 LINK O VAL B 195 K K B1378 1555 1555 2.64 LINK OG SER B 199 K K B1377 1555 1555 2.96 LINK O LEU B 200 K K B1377 1555 1555 2.68 LINK O TYR B 225 K K B1378 1555 1555 2.92 LINK OD2 ASP B 267 ZN ZN B1379 1555 1555 1.95 LINK K K B1378 O HOH B2220 1555 1555 2.68 LINK K K B1378 O HOH B2225 1555 1555 2.67 LINK ZN ZN B1379 OH ALY L 5 1555 1555 1.99 LINK ZN ZN B1379 O HOH L2356 1555 1555 2.24 CISPEP 1 PHE A 208 PRO A 209 0 -6.35 CISPEP 2 GLY A 341 PRO A 342 0 2.28 CISPEP 3 PHE B 208 PRO B 209 0 -4.32 CISPEP 4 GLY B 341 PRO B 342 0 4.24 SITE 1 AC1 5 ASP A 176 ASP A 178 HIS A 180 SER A 199 SITE 2 AC1 5 LEU A 200 SITE 1 AC2 6 PHE A 189 THR A 192 VAL A 195 TYR A 225 SITE 2 AC2 6 HOH A2215 HOH A2220 SITE 1 AC3 5 ASP A 178 HIS A 180 ASP A 267 ALY I 5 SITE 2 AC3 5 HOH I2358 SITE 1 AC4 5 ASP B 176 ASP B 178 HIS B 180 SER B 199 SITE 2 AC4 5 LEU B 200 SITE 1 AC5 6 PHE B 189 THR B 192 VAL B 195 TYR B 225 SITE 2 AC5 6 HOH B2220 HOH B2225 SITE 1 AC6 5 ASP B 178 HIS B 180 ASP B 267 ALY L 5 SITE 2 AC6 5 HOH L2356 CRYST1 52.304 151.801 57.552 90.00 117.02 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019119 0.000000 0.009750 0.00000 SCALE2 0.000000 0.006588 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019505 0.00000 MTRIX1 1 -1.000000 0.001460 0.000180 15.74540 1 MTRIX2 1 -0.001460 -1.000000 -0.000890 -32.11587 1 MTRIX3 1 0.000180 -0.000890 1.000000 -0.00971 1