HEADER OXIDOREDUCTASE 18-JUL-07 2V6G TITLE STRUCTURE OF PROGESTERONE 5BETA-REDUCTASE FROM DIGITALIS LANATA IN TITLE 2 COMPLEX WITH NADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROGESTERONE 5-BETA-REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 26-389; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DIGITALIS LANATA; SOURCE 3 ORGANISM_COMMON: FOXGLOVE; SOURCE 4 ORGANISM_TAXID: 49450; SOURCE 5 ORGAN: LEAVES; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: M15PREP4; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS TYROSINE-DEPENDENT OXIDOREDUCTASE, OXIDOREDUCTASE, SDR, REDUCTASE, KEYWDS 2 CARDENOLIDES, CARDIAC GLYCOSIDES EXPDTA X-RAY DIFFRACTION AUTHOR A.THORN,C.EGERER-SIEBER,C.JAEGER,V.HERL,F.MUELLER-URI,W.KREIS, AUTHOR 2 Y.A.MULLER REVDAT 5 01-MAY-24 2V6G 1 LINK REVDAT 4 24-FEB-09 2V6G 1 VERSN REVDAT 3 01-JUL-08 2V6G 1 JRNL REMARK REVDAT 2 27-NOV-07 2V6G 1 REMARK REVDAT 1 20-NOV-07 2V6G 0 JRNL AUTH A.THORN,C.EGERER-SIEBER,C.JAEGER,V.HERL,F.MUELLER-URI, JRNL AUTH 2 W.KREIS,Y.A.MULLER JRNL TITL THE CRYSTAL STRUCTURE OF PROGESTERONE 5{BETA}-REDUCTASE FROM JRNL TITL 2 DIGITALIS LANATA DEFINES A NOVEL CLASS OF SHORT CHAIN JRNL TITL 3 DEHYDROGENASES/REDUCTASES. JRNL REF J.BIOL.CHEM. V. 283 17260 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18032383 JRNL DOI 10.1074/JBC.M706185200 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 23072 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2557 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1680 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 177 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2889 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 157 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.25000 REMARK 3 B22 (A**2) : -0.25000 REMARK 3 B33 (A**2) : 0.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.219 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.185 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.131 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.818 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3023 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2008 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4119 ; 1.343 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4896 ; 0.996 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 363 ; 6.167 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;36.328 ;24.681 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 480 ;15.913 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;14.586 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 433 ; 0.141 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3357 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 605 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 571 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1978 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1414 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1473 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 148 ; 0.156 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 2 ; 0.116 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 16 ; 0.230 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.129 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1812 ; 0.473 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2922 ; 0.862 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1286 ; 1.415 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1197 ; 2.095 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 208 REMARK 3 RESIDUE RANGE : A 250 A 279 REMARK 3 RESIDUE RANGE : A 353 A 368 REMARK 3 ORIGIN FOR THE GROUP (A): -1.1880 -29.9460 41.1460 REMARK 3 T TENSOR REMARK 3 T11: -0.0454 T22: 0.1444 REMARK 3 T33: -0.2575 T12: -0.1235 REMARK 3 T13: 0.0018 T23: -0.0358 REMARK 3 L TENSOR REMARK 3 L11: 3.0002 L22: 3.0456 REMARK 3 L33: 3.6333 L12: 0.9518 REMARK 3 L13: 0.8309 L23: 0.5081 REMARK 3 S TENSOR REMARK 3 S11: 0.0694 S12: -0.1617 S13: -0.3368 REMARK 3 S21: 0.0819 S22: -0.1640 S23: 0.3941 REMARK 3 S31: 0.5726 S32: -0.9078 S33: 0.0945 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 209 A 249 REMARK 3 RESIDUE RANGE : A 280 A 352 REMARK 3 RESIDUE RANGE : A 369 A 389 REMARK 3 ORIGIN FOR THE GROUP (A): -3.6550 -11.0210 23.9130 REMARK 3 T TENSOR REMARK 3 T11: -0.0344 T22: 0.0025 REMARK 3 T33: -0.2766 T12: 0.0987 REMARK 3 T13: -0.1112 T23: -0.0417 REMARK 3 L TENSOR REMARK 3 L11: 3.7183 L22: 1.5207 REMARK 3 L33: 6.8468 L12: 0.2847 REMARK 3 L13: 2.8005 L23: 1.2936 REMARK 3 S TENSOR REMARK 3 S11: -0.3615 S12: -0.0709 S13: 0.4530 REMARK 3 S21: -0.2415 S22: -0.0839 S23: 0.2381 REMARK 3 S31: -0.6258 S32: -0.5492 S33: 0.4454 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2V6G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1290033223. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25629 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.60 REMARK 200 R MERGE FOR SHELL (I) : 0.74000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NADP FREE STRUCTURE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CONTAINERLESS BATCH METHOD: 300 MICROL REMARK 280 OF HIGH-DENSITY SILICON OIL WAS TRANSFERRED INTO A WELL OF A REMARK 280 CELL CULTURE PLATE AND OVER-LAID WITH 500 MICROL OF REGULAR REMARK 280 SILICON OIL. AT THE INTERFACE BETWEEN THE TWO LIQUIDS A DROPLET REMARK 280 WAS DEPOSITED THAT WAS OBTAINED BY MIXING 0.4 MICROL OF H2O, 2.2 REMARK 280 MICROL OF 5BETA-POR SOLUTION WITH NADP AND PROGESTERONE ADDED REMARK 280 AND 1.8 MICROL OF A CRYSTALLIZATION SOLUTION CONSISTING OF 22.9 % REMARK 280 MPD, 3.5 % PEG 8000, 0.05 M SODIUM ACETATE, 0.02 M CACL2, PH REMARK 280 5.8. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.05000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.29500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.29500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 133.57500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.29500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.29500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 44.52500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.29500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.29500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 133.57500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.29500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.29500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 44.52500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 89.05000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1087 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP A 69 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 69 CZ3 CH2 REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 LYS A 138 CD CE NZ REMARK 470 LYS A 174 CG CD CE NZ REMARK 470 LYS A 309 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 276 CB - CA - C ANGL. DEV. = -11.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 144 -117.35 -115.52 REMARK 500 SER A 161 -169.88 -113.96 REMARK 500 SER A 210 109.95 169.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A1390 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1391 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A1392 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2V6F RELATED DB: PDB REMARK 900 STRUCTURE OF PROGESTERONE 5BETA-REDUCTASE FROM DIGITALIS LANATA REMARK 999 REMARK 999 SEQUENCE REMARK 999 AT POSITION 298 GLUTAMIC ACID INSTEAD OF GLYCINE. (INITIAL REMARK 999 SEQUENCING ERROR) DBREF 2V6G A 26 389 UNP Q6PQJ9 Q6PQJ9_DIGLA 26 389 SEQADV 2V6G GLU A 298 UNP Q6PQJ9 GLY 298 CONFLICT SEQRES 1 A 364 SER SER VAL ALA LEU ILE VAL GLY VAL THR GLY ILE ILE SEQRES 2 A 364 GLY ASN SER LEU ALA GLU ILE LEU PRO LEU ALA ASP THR SEQRES 3 A 364 PRO GLY GLY PRO TRP LYS VAL TYR GLY VAL ALA ARG ARG SEQRES 4 A 364 THR ARG PRO ALA TRP HIS GLU ASP ASN PRO ILE ASN TYR SEQRES 5 A 364 VAL GLN CYS ASP ILE SER ASP PRO ASP ASP SER GLN ALA SEQRES 6 A 364 LYS LEU SER PRO LEU THR ASP VAL THR HIS VAL PHE TYR SEQRES 7 A 364 VAL THR TRP ALA ASN ARG SER THR GLU GLN GLU ASN CYS SEQRES 8 A 364 GLU ALA ASN SER LYS MET PHE ARG ASN VAL LEU ASP ALA SEQRES 9 A 364 VAL ILE PRO ASN CYS PRO ASN LEU LYS HIS ILE SER LEU SEQRES 10 A 364 GLN THR GLY ARG LYS HIS TYR MET GLY PRO PHE GLU SER SEQRES 11 A 364 TYR GLY LYS ILE GLU SER HIS ASP PRO PRO TYR THR GLU SEQRES 12 A 364 ASP LEU PRO ARG LEU LYS TYR MET ASN PHE TYR TYR ASP SEQRES 13 A 364 LEU GLU ASP ILE MET LEU GLU GLU VAL GLU LYS LYS GLU SEQRES 14 A 364 GLY LEU THR TRP SER VAL HIS ARG PRO GLY ASN ILE PHE SEQRES 15 A 364 GLY PHE SER PRO TYR SER MET MET ASN LEU VAL GLY THR SEQRES 16 A 364 LEU CYS VAL TYR ALA ALA ILE CYS LYS HIS GLU GLY LYS SEQRES 17 A 364 VAL LEU ARG PHE THR GLY CYS LYS ALA ALA TRP ASP GLY SEQRES 18 A 364 TYR SER ASP CYS SER ASP ALA ASP LEU ILE ALA GLU HIS SEQRES 19 A 364 HIS ILE TRP ALA ALA VAL ASP PRO TYR ALA LYS ASN GLU SEQRES 20 A 364 ALA PHE ASN VAL SER ASN GLY ASP VAL PHE LYS TRP LYS SEQRES 21 A 364 HIS PHE TRP LYS VAL LEU ALA GLU GLN PHE GLY VAL GLU SEQRES 22 A 364 CYS GLY GLU TYR GLU GLU GLY VAL ASP LEU LYS LEU GLN SEQRES 23 A 364 ASP LEU MET LYS GLY LYS GLU PRO VAL TRP GLU GLU ILE SEQRES 24 A 364 VAL ARG GLU ASN GLY LEU THR PRO THR LYS LEU LYS ASP SEQRES 25 A 364 VAL GLY ILE TRP TRP PHE GLY ASP VAL ILE LEU GLY ASN SEQRES 26 A 364 GLU CYS PHE LEU ASP SER MET ASN LYS SER LYS GLU HIS SEQRES 27 A 364 GLY PHE LEU GLY PHE ARG ASN SER LYS ASN ALA PHE ILE SEQRES 28 A 364 SER TRP ILE ASP LYS ALA LYS ALA TYR LYS ILE VAL PRO HET NAP A1390 48 HET CL A1391 1 HET NA A1392 1 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 CL CL 1- FORMUL 4 NA NA 1+ FORMUL 5 HOH *157(H2 O) HELIX 1 1 GLY A 36 LEU A 46 1 11 HELIX 2 2 ASP A 84 SER A 93 1 10 HELIX 3 3 THR A 111 ILE A 131 1 21 HELIX 4 4 ARG A 146 GLY A 151 1 6 HELIX 5 5 PRO A 152 TYR A 156 5 5 HELIX 6 6 ASN A 177 GLU A 191 1 15 HELIX 7 7 ASN A 216 GLY A 232 1 17 HELIX 8 8 CYS A 240 GLY A 246 1 7 HELIX 9 9 ALA A 253 ASP A 266 1 14 HELIX 10 10 PRO A 267 LYS A 270 5 4 HELIX 11 11 LYS A 283 GLY A 296 1 14 HELIX 12 12 LYS A 309 MET A 314 1 6 HELIX 13 13 LYS A 317 ASN A 328 1 12 HELIX 14 14 LYS A 334 GLY A 339 1 6 HELIX 15 15 ILE A 340 GLY A 349 1 10 HELIX 16 16 MET A 357 HIS A 363 1 7 HELIX 17 17 ASN A 370 TYR A 385 1 16 SHEET 1 AA 7 ASN A 76 GLN A 79 0 SHEET 2 AA 7 TRP A 56 ALA A 62 1 O VAL A 58 N ASN A 76 SHEET 3 AA 7 SER A 27 VAL A 32 1 O SER A 27 N LYS A 57 SHEET 4 AA 7 HIS A 100 TYR A 103 1 O HIS A 100 N LEU A 30 SHEET 5 AA 7 HIS A 139 GLN A 143 1 O HIS A 139 N VAL A 101 SHEET 6 AA 7 THR A 197 PRO A 203 1 O THR A 197 N ILE A 140 SHEET 7 AA 7 GLU A 272 VAL A 276 1 O GLU A 272 N VAL A 200 SHEET 1 AB 2 ILE A 206 PHE A 207 0 SHEET 2 AB 2 SER A 251 ASP A 252 1 O SER A 251 N PHE A 207 LINK O HOH A1072 NA NA A1392 1555 1555 2.43 CISPEP 1 GLY A 54 PRO A 55 0 -3.26 CISPEP 2 PRO A 164 PRO A 165 0 -2.97 SITE 1 AC1 29 GLY A 33 THR A 35 GLY A 36 ILE A 37 SITE 2 AC1 29 ALA A 62 ARG A 63 ARG A 64 CYS A 80 SITE 3 AC1 29 ASP A 81 ILE A 82 VAL A 104 THR A 105 SITE 4 AC1 29 TRP A 106 GLN A 143 THR A 144 TYR A 179 SITE 5 AC1 29 GLY A 204 ILE A 206 SER A 213 MET A 214 SITE 6 AC1 29 MET A 215 PHE A 343 HOH A1018 HOH A1054 SITE 7 AC1 29 HOH A1056 HOH A1155 HOH A1156 HOH A1157 SITE 8 AC1 29 CL A1391 SITE 1 AC2 5 GLY A 145 ARG A 146 LYS A 147 TYR A 179 SITE 2 AC2 5 NAP A1390 SITE 1 AC3 4 ASP A 252 ARG A 369 HOH A1030 HOH A1072 CRYST1 78.590 78.590 178.100 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012724 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012724 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005615 0.00000