HEADER HYDROLASE 18-JUL-07 2V6J TITLE KOKOBERA VIRUS HELICASE: MUTANT MET47THR COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA HELICASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HELICASE DOMAIN, RESIDUES 1678-2108; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KOKOBERA VIRUS; SOURCE 3 ORGANISM_TAXID: 44024; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PDEST14 KEYWDS MEMBRANE, HELICASE, HYDROLASE, RNA HELICASE, TRANSMEMBRANE, RNA KEYWDS 2 REPLICATION, VIRAL REPLICATION, NUCLEOTIDE-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.SPERONI,L.DE COLIBUS,B.COUTARD,B.CANARD,A.MATTEVI REVDAT 5 13-DEC-23 2V6J 1 REMARK REVDAT 4 24-JAN-18 2V6J 1 SOURCE REVDAT 3 13-JUL-11 2V6J 1 VERSN REVDAT 2 24-FEB-09 2V6J 1 VERSN REVDAT 1 25-MAR-08 2V6J 0 JRNL AUTH S.SPERONI,L.DE COLIBUS,E.MASTRANGELO,E.GOULD,B.COUTARD, JRNL AUTH 2 N.L.FORRESTER,S.BLANC,B.CANARD,A.MATTEVI JRNL TITL STRUCTURE AND BIOCHEMICAL ANALYSIS OF KOKOBERA VIRUS JRNL TITL 2 HELICASE JRNL REF PROTEINS: STRUCT., FUNCT., V. 70 1120 2008 JRNL REF 2 BIOINF. JRNL REFN ISSN 0887-3585 JRNL PMID 18004778 JRNL DOI 10.1002/PROT.21812 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 76.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 27396 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1178 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1994 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 93 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3369 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 93 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.57000 REMARK 3 B22 (A**2) : 2.57000 REMARK 3 B33 (A**2) : -3.85000 REMARK 3 B12 (A**2) : 1.28000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.263 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.214 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.165 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.536 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3445 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4662 ; 1.237 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 419 ; 5.760 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;32.766 ;23.110 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 603 ;18.206 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;19.451 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 505 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2625 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1467 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2299 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 132 ; 0.139 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 25 ; 0.208 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.180 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2161 ; 0.617 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3390 ; 1.089 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1472 ; 1.304 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1272 ; 2.093 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 334 REMARK 3 ORIGIN FOR THE GROUP (A): -28.0055 29.9112 1.3882 REMARK 3 T TENSOR REMARK 3 T11: -0.1255 T22: -0.0352 REMARK 3 T33: -0.0899 T12: -0.0318 REMARK 3 T13: -0.0362 T23: 0.0492 REMARK 3 L TENSOR REMARK 3 L11: 2.1704 L22: 0.7638 REMARK 3 L33: 2.0692 L12: 0.8496 REMARK 3 L13: -1.1410 L23: -0.8595 REMARK 3 S TENSOR REMARK 3 S11: -0.0696 S12: -0.1284 S13: -0.1739 REMARK 3 S21: 0.0890 S22: -0.0473 S23: -0.1450 REMARK 3 S31: -0.0885 S32: 0.2850 S33: 0.1169 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 335 A 431 REMARK 3 ORIGIN FOR THE GROUP (A): -54.8544 25.9146 -4.1658 REMARK 3 T TENSOR REMARK 3 T11: -0.1594 T22: -0.0467 REMARK 3 T33: -0.1150 T12: 0.0682 REMARK 3 T13: -0.0052 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 3.5899 L22: 1.9745 REMARK 3 L33: 6.3801 L12: -0.1198 REMARK 3 L13: 2.2534 L23: -0.1768 REMARK 3 S TENSOR REMARK 3 S11: 0.1689 S12: 0.2533 S13: -0.2366 REMARK 3 S21: -0.0634 S22: 0.0160 S23: 0.2416 REMARK 3 S31: 0.1264 S32: -0.1970 S33: -0.1849 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2V6J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1290033226. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27396 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 29.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 20.50 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 21.10 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2V6I REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 IMIDAZOLE PH 8.0 1.0 M NACITRATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.19300 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 92.38600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 92.38600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.19300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, MET 1724 TO THR REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 1 REMARK 465 THR A 60 REMARK 465 PRO A 61 REMARK 465 ALA A 62 REMARK 465 VAL A 63 REMARK 465 GLN A 64 REMARK 465 SER A 65 REMARK 465 GLU A 66 REMARK 465 ARG A 67 REMARK 465 THR A 68 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 113 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 113 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 131 149.46 -173.01 REMARK 500 THR A 138 22.22 -144.23 REMARK 500 ASP A 225 3.66 -63.36 REMARK 500 LYS A 234 71.59 -102.99 REMARK 500 VAL A 318 126.22 -37.54 REMARK 500 ARG A 401 94.24 -66.63 REMARK 500 LYS A 405 75.73 -162.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 229 GLY A 230 -127.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2V6I RELATED DB: PDB REMARK 900 KOKOBERA VIRUS HELICASE DBREF 2V6J A 1 431 UNP Q32ZD5 Q32ZD5_9FLAV 1678 2108 SEQADV 2V6J THR A 47 UNP Q32ZD5 MET 1724 ENGINEERED MUTATION SEQADV 2V6J LEU A 86 UNP Q32ZD5 PHE 1763 CONFLICT SEQADV 2V6J THR A 168 UNP Q32ZD5 ILE 1845 CONFLICT SEQRES 1 A 431 LYS ARG GLU LEU THR VAL LEU ASP LEU HIS PRO GLY ALA SEQRES 2 A 431 GLY LYS THR ARG ARG VAL LEU PRO GLN LEU VAL ARG GLU SEQRES 3 A 431 ALA VAL LYS LYS ARG LEU ARG THR VAL ILE LEU ALA PRO SEQRES 4 A 431 THR ARG VAL VAL ALA SER GLU THR TYR GLU ALA LEU ARG SEQRES 5 A 431 GLY GLU PRO ILE ARG TYR MET THR PRO ALA VAL GLN SER SEQRES 6 A 431 GLU ARG THR GLY ASN GLU ILE VAL ASP PHE MET CYS HIS SEQRES 7 A 431 SER THR PHE THR MET LYS LEU LEU GLN GLY VAL ARG VAL SEQRES 8 A 431 PRO ASN TYR ASN LEU TYR ILE MET ASP GLU ALA HIS PHE SEQRES 9 A 431 LEU ASP PRO ALA SER VAL ALA ALA ARG GLY TYR ILE GLU SEQRES 10 A 431 THR ARG VAL SER MET GLY ASP ALA GLY ALA ILE PHE MET SEQRES 11 A 431 THR ALA THR PRO PRO GLY THR THR GLU ALA PHE PRO PRO SEQRES 12 A 431 SER ASN SER PRO ILE ILE ASP GLU GLU THR ARG ILE PRO SEQRES 13 A 431 ASP LYS ALA TRP ASN SER GLY TYR GLU TRP ILE THR GLU SEQRES 14 A 431 PHE ASP GLY ARG THR VAL TRP PHE VAL HIS SER ILE LYS SEQRES 15 A 431 GLN GLY ALA GLU ILE GLY THR CYS LEU GLN LYS ALA GLY SEQRES 16 A 431 LYS LYS VAL LEU TYR LEU ASN ARG LYS THR PHE GLU SER SEQRES 17 A 431 GLU TYR PRO LYS CYS LYS SER GLU LYS TRP ASP PHE VAL SEQRES 18 A 431 ILE THR THR ASP ILE SER GLU MET GLY ALA ASN PHE LYS SEQRES 19 A 431 ALA ASP ARG VAL ILE ASP PRO ARG LYS THR ILE LYS PRO SEQRES 20 A 431 ILE LEU LEU ASP GLY ARG VAL SER MET GLN GLY PRO ILE SEQRES 21 A 431 ALA ILE THR PRO ALA SER ALA ALA GLN ARG ARG GLY ARG SEQRES 22 A 431 ILE GLY ARG ASN PRO GLU LYS LEU GLY ASP ILE TYR ALA SEQRES 23 A 431 TYR SER GLY ASN VAL SER SER ASP ASN GLU GLY HIS VAL SEQRES 24 A 431 SER TRP THR GLU ALA ARG MET LEU LEU ASP ASN VAL HIS SEQRES 25 A 431 VAL GLN GLY GLY VAL VAL ALA GLN LEU TYR THR PRO GLU SEQRES 26 A 431 ARG GLU LYS THR GLU ALA TYR GLU GLY GLU PHE LYS LEU SEQRES 27 A 431 LYS THR ASN GLN ARG LYS VAL PHE SER GLU LEU ILE ARG SEQRES 28 A 431 THR GLY ASP LEU PRO VAL TRP LEU ALA PHE GLN VAL ALA SEQRES 29 A 431 SER ALA ASN VAL GLU TYR HIS ASP ARG LYS TRP CYS PHE SEQRES 30 A 431 ASP GLY PRO ASN GLU HIS LEU LEU LEU GLU ASN ASN GLN SEQRES 31 A 431 GLU ILE GLU VAL TRP THR ARG GLN GLY GLN ARG ARG VAL SEQRES 32 A 431 LEU LYS PRO ARG TRP LEU ASP GLY ARG ILE THR SER ASP SEQRES 33 A 431 HIS LEU ASN LEU LYS SER PHE LYS GLU PHE ALA SER GLY SEQRES 34 A 431 LYS ARG FORMUL 2 HOH *93(H2 O) HELIX 1 1 ARG A 18 LYS A 30 1 13 HELIX 2 2 THR A 40 LEU A 51 1 12 HELIX 3 3 HIS A 78 GLY A 88 1 11 HELIX 4 4 ASP A 106 MET A 122 1 17 HELIX 5 5 TYR A 164 GLU A 169 1 6 HELIX 6 6 SER A 180 ALA A 194 1 15 HELIX 7 7 THR A 205 TYR A 210 1 6 HELIX 8 8 PRO A 211 GLU A 216 1 6 HELIX 9 9 ASP A 225 GLU A 228 5 4 HELIX 10 10 THR A 263 GLY A 272 1 10 HELIX 11 11 HIS A 298 ASP A 309 1 12 HELIX 12 12 TYR A 322 THR A 329 5 8 HELIX 13 13 LYS A 339 THR A 352 1 14 HELIX 14 14 PRO A 356 ALA A 366 1 11 HELIX 15 15 ARG A 373 PHE A 377 5 5 HELIX 16 16 PRO A 380 LEU A 384 5 5 HELIX 17 17 GLY A 411 SER A 415 5 5 HELIX 18 18 ASP A 416 SER A 428 1 13 SHEET 1 AA 6 LEU A 4 LEU A 7 0 SHEET 2 AA 6 GLY A 126 MET A 130 1 O ALA A 127 N THR A 5 SHEET 3 AA 6 LEU A 96 ASP A 100 1 O TYR A 97 N ILE A 128 SHEET 4 AA 6 THR A 34 ALA A 38 1 O VAL A 35 N ILE A 98 SHEET 5 AA 6 VAL A 73 CYS A 77 1 O ASP A 74 N ILE A 36 SHEET 6 AA 6 ILE A 56 TYR A 58 1 O ARG A 57 N PHE A 75 SHEET 1 AB 6 ILE A 149 GLU A 152 0 SHEET 2 AB 6 ILE A 284 TYR A 287 1 O TYR A 285 N GLU A 151 SHEET 3 AB 6 ARG A 237 ASP A 240 1 O VAL A 238 N ALA A 286 SHEET 4 AB 6 THR A 174 PHE A 177 1 O VAL A 175 N ILE A 239 SHEET 5 AB 6 PHE A 220 THR A 223 1 O VAL A 221 N TRP A 176 SHEET 6 AB 6 VAL A 198 LEU A 201 1 O LEU A 199 N ILE A 222 SHEET 1 AC 2 LYS A 243 LEU A 249 0 SHEET 2 AC 2 VAL A 254 ALA A 261 -1 O SER A 255 N ILE A 248 SHEET 1 AD 2 LEU A 386 GLU A 387 0 SHEET 2 AD 2 GLN A 390 GLU A 391 -1 O GLN A 390 N GLU A 387 SHEET 1 AE 2 GLU A 393 TRP A 395 0 SHEET 2 AE 2 ARG A 401 VAL A 403 -1 O ARG A 402 N VAL A 394 CISPEP 1 GLY A 258 PRO A 259 0 5.17 CRYST1 88.570 88.570 138.579 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011291 0.006519 0.000000 0.00000 SCALE2 0.000000 0.013037 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007216 0.00000