HEADER OXIDOREDUCTASE 19-JUL-07 2V6O TITLE STRUCTURE OF SCHISTOSOMA MANSONI THIOREDOXIN-GLUTATHIONE REDUCTASE TITLE 2 (SMTGR) COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN GLUTATHIONE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-596; COMPND 5 EC: 1.6.4.5; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: FAD COFACTOR BOUND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHISTOSOMA MANSONI; SOURCE 3 ORGANISM_COMMON: BLOOD FLUKE; SOURCE 4 ORGANISM_TAXID: 6183; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)GOLD; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEXT4T-1; SOURCE 9 OTHER_DETAILS: ADULT CDNA KEYWDS FAD, FLAVOPROTEIN, OXIDOREDUCTASE, CHIMERIC ENZYME, THIOL-MEDIATED KEYWDS 2 DETOXIFICATION PATHWAY, REDOX-ACTIVE CENTER EXPDTA X-RAY DIFFRACTION AUTHOR A.E.MIELE,F.ANGELUCCI,G.BOUMIS,D.DIMASTROGIOVANNI,A.BELLELLI, AUTHOR 2 M.BRUNORI REVDAT 3 13-DEC-23 2V6O 1 REMARK REVDAT 2 24-FEB-09 2V6O 1 VERSN REVDAT 1 04-MAR-08 2V6O 0 JRNL AUTH F.ANGELUCCI,A.E.MIELE,G.BOUMIS,D.DIMASTROGIOVANNI,M.BRUNORI, JRNL AUTH 2 A.BELLELLI JRNL TITL GLUTATHIONE REDUCTASE AND THIOREDOXIN REDUCTASE AT THE JRNL TITL 2 CROSSROAD: THE STRUCTURE OF SCHISTOSOMA MANSONI THIOREDOXIN JRNL TITL 3 GLUTATHIONE REDUCTASE JRNL REF PROTEINS V. 72 936 2008 JRNL REFN ISSN 0887-3585 JRNL PMID 18300227 JRNL DOI 10.1002/PROT.21986 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 36440 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1916 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2618 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2060 REMARK 3 BIN FREE R VALUE SET COUNT : 131 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4492 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 109 REMARK 3 SOLVENT ATOMS : 312 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : 0.20000 REMARK 3 B33 (A**2) : -0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.14000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.235 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.212 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.138 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.339 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.896 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4809 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6530 ; 2.054 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 621 ;14.987 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 195 ;33.709 ;24.872 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 820 ;14.607 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;17.648 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 739 ; 0.173 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3549 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2334 ; 0.231 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3284 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 359 ; 0.264 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 93 ; 0.200 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.117 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3095 ; 1.238 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4798 ; 1.813 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2042 ; 2.977 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1717 ; 4.073 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. DENSITY FOR RESIDUES 1-7 AND 594-597 WAS NOT VISIBLE, REMARK 3 THEREFORE THESE AMINO ACIDS WERE NOT MODELED. REMARK 4 REMARK 4 2V6O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1290033188. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 5 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39579 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1H6V REMARK 200 REMARK 200 REMARK: AFTER FIXING THE FIRST DOMAIN, THE SECOND DOMAIN WAS REMARK 200 SEARCHED USING 1Z7R AS STARTING MODEL. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 3350, 0.1M HEPES PH 7.2, 0.2M REMARK 280 NANO3, 5MM DTT REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.16200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.26650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.16200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 51.26650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 8520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 57430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 BELONGS TO THE CLASS-I PYRIDINE NUCLEOTIDE-DISULFIDE REMARK 400 OXIDOREDUCTASE FAMILY. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 PRO A 3 REMARK 465 ALA A 4 REMARK 465 ASP A 5 REMARK 465 GLY A 6 REMARK 465 THR A 7 REMARK 465 SER A 594 REMARK 465 GLY A 595 REMARK 465 CYS A 596 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 470 O HOH A 2240 2.12 REMARK 500 OD2 ASP A 177 O HOH A 2065 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 84 -150.79 -84.46 REMARK 500 LYS A 189 19.11 91.04 REMARK 500 PRO A 233 -39.22 -39.35 REMARK 500 ALA A 256 55.24 -144.13 REMARK 500 SER A 318 -77.62 -137.01 REMARK 500 LEU A 401 -72.75 -74.38 REMARK 500 CYS A 402 115.83 102.49 REMARK 500 GLU A 403 -20.33 -35.63 REMARK 500 ASP A 530 57.82 -104.94 REMARK 500 HIS A 582 -29.07 -142.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A1594 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A1595 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A1596 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A1597 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A1598 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A1599 REMARK 999 REMARK 999 SEQUENCE REMARK 999 2 RESIDUES DELETION 597-598 DBREF 2V6O A 1 596 UNP Q962Y6 Q962Y6_SCHMA 1 596 SEQRES 1 A 596 MET PRO PRO ALA ASP GLY THR SER GLN TRP LEU ARG LYS SEQRES 2 A 596 THR VAL ASP SER ALA ALA VAL ILE LEU PHE SER LYS THR SEQRES 3 A 596 THR CYS PRO TYR CYS LYS LYS VAL LYS ASP VAL LEU ALA SEQRES 4 A 596 GLU ALA LYS ILE LYS HIS ALA THR ILE GLU LEU ASP GLN SEQRES 5 A 596 LEU SER ASN GLY SER ALA ILE GLN LYS CYS LEU ALA SER SEQRES 6 A 596 PHE SER LYS ILE GLU THR VAL PRO GLN MET PHE VAL ARG SEQRES 7 A 596 GLY LYS PHE ILE GLY ASP SER GLN THR VAL LEU LYS TYR SEQRES 8 A 596 TYR SER ASN ASP GLU LEU ALA GLY ILE VAL ASN GLU SER SEQRES 9 A 596 LYS TYR ASP TYR ASP LEU ILE VAL ILE GLY GLY GLY SER SEQRES 10 A 596 GLY GLY LEU ALA ALA GLY LYS GLU ALA ALA LYS TYR GLY SEQRES 11 A 596 ALA LYS THR ALA VAL LEU ASP TYR VAL GLU PRO THR PRO SEQRES 12 A 596 ILE GLY THR THR TRP GLY LEU GLY GLY THR CYS VAL ASN SEQRES 13 A 596 VAL GLY CYS ILE PRO LYS LYS LEU MET HIS GLN ALA GLY SEQRES 14 A 596 LEU LEU SER HIS ALA LEU GLU ASP ALA GLU HIS PHE GLY SEQRES 15 A 596 TRP SER LEU ASP ARG SER LYS ILE SER HIS ASN TRP SER SEQRES 16 A 596 THR MET VAL GLU GLY VAL GLN SER HIS ILE GLY SER LEU SEQRES 17 A 596 ASN TRP GLY TYR LYS VAL ALA LEU ARG ASP ASN GLN VAL SEQRES 18 A 596 THR TYR LEU ASN ALA LYS GLY ARG LEU ILE SER PRO HIS SEQRES 19 A 596 GLU VAL GLN ILE THR ASP LYS ASN GLN LYS VAL SER THR SEQRES 20 A 596 ILE THR GLY ASN LYS ILE ILE LEU ALA THR GLY GLU ARG SEQRES 21 A 596 PRO LYS TYR PRO GLU ILE PRO GLY ALA VAL GLU TYR GLY SEQRES 22 A 596 ILE THR SER ASP ASP LEU PHE SER LEU PRO TYR PHE PRO SEQRES 23 A 596 GLY LYS THR LEU VAL ILE GLY ALA SER TYR VAL ALA LEU SEQRES 24 A 596 GLU CYS ALA GLY PHE LEU ALA SER LEU GLY GLY ASP VAL SEQRES 25 A 596 THR VAL MET VAL ARG SER ILE LEU LEU ARG GLY PHE ASP SEQRES 26 A 596 GLN GLN MET ALA GLU LYS VAL GLY ASP TYR MET GLU ASN SEQRES 27 A 596 HIS GLY VAL LYS PHE ALA LYS LEU CYS VAL PRO ASP GLU SEQRES 28 A 596 ILE LYS GLN LEU LYS VAL VAL ASP THR GLU ASN ASN LYS SEQRES 29 A 596 PRO GLY LEU LEU LEU VAL LYS GLY HIS TYR THR ASP GLY SEQRES 30 A 596 LYS LYS PHE GLU GLU GLU PHE GLU THR VAL ILE PHE ALA SEQRES 31 A 596 VAL GLY ARG GLU PRO GLN LEU SER LYS VAL LEU CYS GLU SEQRES 32 A 596 THR VAL GLY VAL LYS LEU ASP LYS ASN GLY ARG VAL VAL SEQRES 33 A 596 CYS THR ASP ASP GLU GLN THR THR VAL SER ASN VAL TYR SEQRES 34 A 596 ALA ILE GLY ASP ILE ASN ALA GLY LYS PRO GLN LEU THR SEQRES 35 A 596 PRO VAL ALA ILE GLN ALA GLY ARG TYR LEU ALA ARG ARG SEQRES 36 A 596 LEU PHE ALA GLY ALA THR GLU LEU THR ASP TYR SER ASN SEQRES 37 A 596 VAL ALA THR THR VAL PHE THR PRO LEU GLU TYR GLY ALA SEQRES 38 A 596 CYS GLY LEU SER GLU GLU ASP ALA ILE GLU LYS TYR GLY SEQRES 39 A 596 ASP LYS ASP ILE GLU VAL TYR HIS SER ASN PHE LYS PRO SEQRES 40 A 596 LEU GLU TRP THR VAL ALA HIS ARG GLU ASP ASN VAL CYS SEQRES 41 A 596 TYR MET LYS LEU VAL CYS ARG LYS SER ASP ASN MET ARG SEQRES 42 A 596 VAL LEU GLY LEU HIS VAL LEU GLY PRO ASN ALA GLY GLU SEQRES 43 A 596 ILE THR GLN GLY TYR ALA VAL ALA ILE LYS MET GLY ALA SEQRES 44 A 596 THR LYS ALA ASP PHE ASP ARG THR ILE GLY ILE HIS PRO SEQRES 45 A 596 THR CYS SER GLU THR PHE THR THR LEU HIS VAL THR LYS SEQRES 46 A 596 LYS SER GLY VAL SER PRO ILE VAL SER GLY CYS HET FAD A1594 53 HET PG4 A1595 13 HET PG4 A1596 13 HET PG4 A1597 13 HET PG4 A1598 13 HET NO3 A1599 4 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM NO3 NITRATE ION FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 PG4 4(C8 H18 O5) FORMUL 7 NO3 N O3 1- FORMUL 8 HOH *312(H2 O) HELIX 1 1 SER A 8 ALA A 18 1 11 HELIX 2 2 CYS A 28 ALA A 41 1 14 HELIX 3 3 ASP A 51 LEU A 53 5 3 HELIX 4 4 ASN A 55 LYS A 68 1 14 HELIX 5 5 ASP A 84 ASN A 94 1 11 HELIX 6 6 GLU A 96 ASN A 102 1 7 HELIX 7 7 GLY A 116 TYR A 129 1 14 HELIX 8 8 GLY A 152 GLY A 158 1 7 HELIX 9 9 GLY A 158 PHE A 181 1 24 HELIX 10 10 ASN A 193 ASN A 219 1 27 HELIX 11 11 GLY A 268 GLY A 273 1 6 HELIX 12 12 THR A 275 PHE A 280 1 6 HELIX 13 13 SER A 295 LEU A 308 1 14 HELIX 14 14 ASP A 325 ASN A 338 1 14 HELIX 15 15 GLY A 432 ILE A 434 5 3 HELIX 16 16 LEU A 441 ALA A 458 1 18 HELIX 17 17 SER A 485 GLY A 494 1 10 HELIX 18 18 PRO A 507 ALA A 513 1 7 HELIX 19 19 ASN A 543 MET A 557 1 15 HELIX 20 20 THR A 560 THR A 567 1 8 HELIX 21 21 CYS A 574 THR A 579 5 6 SHEET 1 AA 4 ALA A 46 GLU A 49 0 SHEET 2 AA 4 VAL A 20 SER A 24 1 O VAL A 20 N ALA A 46 SHEET 3 AA 4 GLN A 74 VAL A 77 -1 O GLN A 74 N PHE A 23 SHEET 4 AA 4 LYS A 80 GLY A 83 -1 O LYS A 80 N VAL A 77 SHEET 1 AB 6 THR A 222 LEU A 224 0 SHEET 2 AB 6 THR A 133 LEU A 136 1 O THR A 133 N THR A 222 SHEET 3 AB 6 TYR A 108 ILE A 113 1 O LEU A 110 N ALA A 134 SHEET 4 AB 6 VAL A 245 LEU A 255 1 O THR A 249 N TYR A 108 SHEET 5 AB 6 GLU A 235 THR A 239 -1 O VAL A 236 N ILE A 248 SHEET 6 AB 6 LYS A 227 LEU A 230 -1 O LYS A 227 N THR A 239 SHEET 1 AC 5 THR A 222 LEU A 224 0 SHEET 2 AC 5 THR A 133 LEU A 136 1 O THR A 133 N THR A 222 SHEET 3 AC 5 TYR A 108 ILE A 113 1 O LEU A 110 N ALA A 134 SHEET 4 AC 5 VAL A 245 LEU A 255 1 O THR A 249 N TYR A 108 SHEET 5 AC 5 VAL A 428 ALA A 430 1 O TYR A 429 N LEU A 255 SHEET 1 AD 2 ARG A 260 PRO A 261 0 SHEET 2 AD 2 ARG A 393 GLU A 394 -1 O GLU A 394 N ARG A 260 SHEET 1 AE 4 VAL A 341 ALA A 344 0 SHEET 2 AE 4 VAL A 312 MET A 315 1 O VAL A 312 N LYS A 342 SHEET 3 AE 4 THR A 289 ILE A 292 1 O THR A 289 N THR A 313 SHEET 4 AE 4 THR A 386 PHE A 389 1 O THR A 386 N LEU A 290 SHEET 1 AF 3 CYS A 347 LYS A 356 0 SHEET 2 AF 3 LEU A 367 TYR A 374 -1 O LEU A 367 N LEU A 355 SHEET 3 AF 3 LYS A 379 PHE A 384 -1 O PHE A 380 N GLY A 372 SHEET 1 AG 5 THR A 471 VAL A 473 0 SHEET 2 AG 5 TYR A 479 GLY A 483 -1 O TYR A 479 N VAL A 473 SHEET 3 AG 5 ARG A 533 LEU A 540 -1 O LEU A 537 N CYS A 482 SHEET 4 AG 5 CYS A 520 ARG A 527 -1 O TYR A 521 N LEU A 540 SHEET 5 AG 5 ILE A 498 PHE A 505 -1 O GLU A 499 N CYS A 526 SSBOND 1 CYS A 154 CYS A 159 1555 1555 2.02 CISPEP 1 VAL A 72 PRO A 73 0 2.07 CISPEP 2 HIS A 571 PRO A 572 0 -7.58 SITE 1 AC1 40 ILE A 113 GLY A 114 GLY A 116 SER A 117 SITE 2 AC1 40 GLY A 118 LEU A 136 ASP A 137 TYR A 138 SITE 3 AC1 40 VAL A 139 GLY A 152 THR A 153 CYS A 154 SITE 4 AC1 40 VAL A 157 GLY A 158 CYS A 159 LYS A 162 SITE 5 AC1 40 ALA A 226 GLY A 228 ALA A 256 THR A 257 SITE 6 AC1 40 GLY A 258 TYR A 296 ARG A 393 VAL A 400 SITE 7 AC1 40 GLY A 432 ASP A 433 GLN A 440 LEU A 441 SITE 8 AC1 40 THR A 442 PRO A 443 HIS A 571 HOH A2033 SITE 9 AC1 40 HOH A2042 HOH A2106 HOH A2108 HOH A2124 SITE 10 AC1 40 HOH A2209 HOH A2307 HOH A2308 HOH A2309 SITE 1 AC2 13 PRO A 443 ILE A 446 GLN A 447 PHE A 564 SITE 2 AC2 13 ASP A 565 THR A 567 ILE A 568 GLY A 569 SITE 3 AC2 13 HIS A 571 GLU A 576 THR A 579 THR A 580 SITE 4 AC2 13 HOH A2310 SITE 1 AC3 9 TRP A 10 LYS A 13 THR A 14 SER A 17 SITE 2 AC3 9 ASP A 420 TYR A 429 ARG A 455 LEU A 456 SITE 3 AC3 9 ALA A 460 SITE 1 AC4 11 SER A 318 LEU A 320 GLN A 326 ALA A 329 SITE 2 AC4 11 GLU A 330 GLY A 333 ASP A 334 GLU A 337 SITE 3 AC4 11 PHE A 343 LYS A 345 HOH A2311 SITE 1 AC5 7 TYR A 138 ASN A 225 LYS A 227 THR A 239 SITE 2 AC5 7 ASP A 240 LYS A 241 GLN A 243 SITE 1 AC6 8 SER A 295 VAL A 297 ALA A 390 VAL A 391 SITE 2 AC6 8 GLY A 392 ARG A 393 HOH A2120 HOH A2312 CRYST1 142.324 102.533 59.027 90.00 112.63 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007026 0.000000 0.002929 0.00000 SCALE2 0.000000 0.009753 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018355 0.00000