data_2V6X # _entry.id 2V6X # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2V6X PDBE EBI-31460 WWPDB D_1290031460 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1WR0 unspecified 'STRUCTURAL CHARACTERIZATION OF THE MIT DOMAIN FROM HUMANVPS4B' PDB 1XWI unspecified 'CRYSTAL STRUCTURE OF VPS4B' PDB 1YXR unspecified 'NMR STRUCTURE OF VPS4A MIT DOMAIN' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2V6X _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2007-07-23 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Obita, T.' 1 'Perisic, O.' 2 'Ghazi-Tabatabai, S.' 3 'Saksena, S.' 4 'Emr, S.D.' 5 'Williams, R.L.' 6 # _citation.id primary _citation.title 'Structural Basis for Selective Recognition of Escrt-III by the Aaa ATPase Vps4' _citation.journal_abbrev Nature _citation.journal_volume 449 _citation.page_first 735 _citation.page_last ? _citation.year 2007 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17928861 _citation.pdbx_database_id_DOI 10.1038/NATURE06171 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Obita, T.' 1 primary 'Saksena, S.' 2 primary 'Ghazi-Tabatabai, S.' 3 primary 'Gill, D.J.' 4 primary 'Perisic, O.' 5 primary 'Emr, S.D.' 6 primary 'Williams, R.L.' 7 # _cell.entry_id 2V6X _cell.length_a 78.145 _cell.length_b 82.270 _cell.length_c 21.474 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2V6X _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 4' 9816.693 1 3.6.4.6 ? 'MIT DOMAIN RESIUDES 1-82' ? 2 polymer man 'DOA4-INDEPENDENT DEGRADATION PROTEIN 4' 5772.053 1 ? ? 'C-TERMINAL FRAGMENT RESIDUES 102-151' ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 water nat water 18.015 32 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'VPS4, PROTEIN END13, DOA4-INDEPENDENT DEGRADATION PROTEIN 6, VACUOLAR PROTEIN-TARGETING PROTEIN 10' 2 'VACUOLAR PROTEIN SORTING- ASSOCIATED PROTEIN 2, VPS2, VACUOLAR PROTEIN-TARGETING PROTEIN 14' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;GSH(MSE)STGDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYL(MSE)LALKYEKNPKSKDLIRAKFTEYLNRAEQ LKKHLESEEANAA ; ;GSHMSTGDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNRAEQLKKHLESE EANAA ; A ? 2 'polypeptide(L)' no yes 'GSH(MSE)LQSTPQNLVSNAPIAETA(MSE)GIAEPIGAGSEFHGNPDDDLQARLNTLKKQT' GSHMLQSTPQNLVSNAPIAETAMGIAEPIGAGSEFHGNPDDDLQARLNTLKKQT B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MSE n 1 5 SER n 1 6 THR n 1 7 GLY n 1 8 ASP n 1 9 PHE n 1 10 LEU n 1 11 THR n 1 12 LYS n 1 13 GLY n 1 14 ILE n 1 15 GLU n 1 16 LEU n 1 17 VAL n 1 18 GLN n 1 19 LYS n 1 20 ALA n 1 21 ILE n 1 22 ASP n 1 23 LEU n 1 24 ASP n 1 25 THR n 1 26 ALA n 1 27 THR n 1 28 GLN n 1 29 TYR n 1 30 GLU n 1 31 GLU n 1 32 ALA n 1 33 TYR n 1 34 THR n 1 35 ALA n 1 36 TYR n 1 37 TYR n 1 38 ASN n 1 39 GLY n 1 40 LEU n 1 41 ASP n 1 42 TYR n 1 43 LEU n 1 44 MSE n 1 45 LEU n 1 46 ALA n 1 47 LEU n 1 48 LYS n 1 49 TYR n 1 50 GLU n 1 51 LYS n 1 52 ASN n 1 53 PRO n 1 54 LYS n 1 55 SER n 1 56 LYS n 1 57 ASP n 1 58 LEU n 1 59 ILE n 1 60 ARG n 1 61 ALA n 1 62 LYS n 1 63 PHE n 1 64 THR n 1 65 GLU n 1 66 TYR n 1 67 LEU n 1 68 ASN n 1 69 ARG n 1 70 ALA n 1 71 GLU n 1 72 GLN n 1 73 LEU n 1 74 LYS n 1 75 LYS n 1 76 HIS n 1 77 LEU n 1 78 GLU n 1 79 SER n 1 80 GLU n 1 81 GLU n 1 82 ALA n 1 83 ASN n 1 84 ALA n 1 85 ALA n 2 1 GLY n 2 2 SER n 2 3 HIS n 2 4 MSE n 2 5 LEU n 2 6 GLN n 2 7 SER n 2 8 THR n 2 9 PRO n 2 10 GLN n 2 11 ASN n 2 12 LEU n 2 13 VAL n 2 14 SER n 2 15 ASN n 2 16 ALA n 2 17 PRO n 2 18 ILE n 2 19 ALA n 2 20 GLU n 2 21 THR n 2 22 ALA n 2 23 MSE n 2 24 GLY n 2 25 ILE n 2 26 ALA n 2 27 GLU n 2 28 PRO n 2 29 ILE n 2 30 GLY n 2 31 ALA n 2 32 GLY n 2 33 SER n 2 34 GLU n 2 35 PHE n 2 36 HIS n 2 37 GLY n 2 38 ASN n 2 39 PRO n 2 40 ASP n 2 41 ASP n 2 42 ASP n 2 43 LEU n 2 44 GLN n 2 45 ALA n 2 46 ARG n 2 47 LEU n 2 48 ASN n 2 49 THR n 2 50 LEU n 2 51 LYS n 2 52 LYS n 2 53 GLN n 2 54 THR n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? ;BAKER'S YEAST ; ? ? ? ? ? ? ? ? 'SACCHAROMYCES CEREVISIAE' 4932 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI BL21(DE3)' 469008 ? ? ? ? ? ? ? C41 ? ? ? ? ? ? ? ? ? ? POPTG ? ? 2 1 sample ? ? ? ;BAKER'S YEAST ; ? ? ? ? ? ? ? ? 'SACCHAROMYCES CEREVISIAE' 4932 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI BL21(DE3)' 469008 ? ? ? ? ? ? ? C41 ? ? ? ? ? ? ? ? ? ? POPTG ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2V6X 1 ? ? 2V6X ? 2 UNP VPS4_YEAST 1 ? ? P52917 ? 3 PDB 2V6X 2 ? ? 2V6X ? 4 UNP DID4_YEAST 2 ? ? P36108 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2V6X A 1 ? 3 ? 2V6X -2 ? 0 ? -2 0 2 2 2V6X A 4 ? 85 ? P52917 1 ? 82 ? 1 82 3 3 2V6X B 1 ? 4 ? 2V6X 179 ? 182 ? 179 182 4 4 2V6X B 5 ? 54 ? P36108 102 ? 151 ? 183 232 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2V6X _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.2 _exptl_crystal.density_percent_sol 36.1 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1M HEPES(PH7.0), 2.0M AMMONIUM SULFATE' # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 ? ? 1 2 ? ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD MARRESEARCH 2007-01-26 ? 2 CCD 'ADSC CCD' ? ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M ? MAD x-ray 2 1 M ? ? x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.8726 1.0 2 0.9392 1.0 3 0.9792 1.0 4 0.9796 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'ESRF BEAMLINE ID23-1' ESRF ID23-1 ? '0.8726, 0.9392' 2 SYNCHROTRON 'ESRF BEAMLINE ID23-2' ESRF ID23-2 ? '0.9792, 0.9796' # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2V6X _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 56.61 _reflns.d_resolution_high 2.00 _reflns.number_obs 9997 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.12 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.40 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.23 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.02 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.44 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.28 _reflns_shell.pdbx_redundancy 5.31 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2V6X _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.ls_number_reflns_obs 9483 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 56.61 _refine.ls_d_res_high 1.98 _refine.ls_percent_reflns_obs 98.6 _refine.ls_R_factor_obs 0.200 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.198 _refine.ls_R_factor_R_free 0.228 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 477 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.935 _refine.correlation_coeff_Fo_to_Fc_free 0.924 _refine.B_iso_mean 19.98 _refine.aniso_B[1][1] -0.95000 _refine.aniso_B[2][2] 1.52000 _refine.aniso_B[3][3] -0.57000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. SEGMENT 207-216 OF VPS2 ARE DISORDERED.' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.173 _refine.pdbx_overall_ESU_R_Free 0.150 _refine.overall_SU_ML 0.103 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 7.393 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 979 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 32 _refine_hist.number_atoms_total 1016 _refine_hist.d_res_high 1.98 _refine_hist.d_res_low 56.61 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.015 0.022 ? 997 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.334 1.986 ? 1343 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.193 5.000 ? 120 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.799 26.250 ? 48 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.331 15.000 ? 187 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 8.964 15.000 ? 3 'X-RAY DIFFRACTION' ? r_chiral_restr 0.104 0.200 ? 151 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 731 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.201 0.200 ? 391 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.291 0.200 ? 681 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.095 0.200 ? 39 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.305 0.200 ? 54 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.102 0.200 ? 11 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.934 1.500 ? 639 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.372 2.000 ? 980 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.731 3.000 ? 410 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.850 4.500 ? 363 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.98 _refine_ls_shell.d_res_low 2.03 _refine_ls_shell.number_reflns_R_work 385 _refine_ls_shell.R_factor_R_work 0.2160 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.3580 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 18 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2V6X _struct.title 'Stractural insight into the interaction between ESCRT-III and Vps4' _struct.pdbx_descriptor 'VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 4 (E.C.3.6.4.6), DOA4-INDEPENDENT DEGRADATION PROTEIN 4' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2V6X _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' _struct_keywords.text ;PROTEIN TRANSPORT, VACUOLE, ENDOSOME, TRANSPORT, ESCRT-III, MVB, VPS2, VPS4, SKD1, VPS4B, VPS4A, CHMP2B, CHMP2A, NUCLEOTIDE-BINDING, AAA-ATPASE, ATP-BINDING, MULTIVESICULAR, VACUOLAR PROTEIN SORTING ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 8 ? ALA A 26 ? ASP A 5 ALA A 23 1 ? 19 HELX_P HELX_P2 2 GLN A 28 ? GLU A 50 ? GLN A 25 GLU A 47 1 ? 23 HELX_P HELX_P3 3 ASN A 52 ? ASN A 83 ? ASN A 49 ASN A 80 1 ? 32 HELX_P HELX_P4 4 PRO B 9 ? SER B 14 ? PRO B 187 SER B 192 1 ? 6 HELX_P HELX_P5 5 ILE B 18 ? MSE B 23 ? ILE B 196 MSE B 201 5 ? 6 HELX_P HELX_P6 6 ASP B 40 ? LYS B 52 ? ASP B 218 LYS B 230 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A HIS 3 C ? ? ? 1_555 A MSE 4 N ? ? A HIS 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale ? ? A MSE 4 C ? ? ? 1_555 A SER 5 N ? ? A MSE 1 A SER 2 1_555 ? ? ? ? ? ? ? 1.319 ? covale3 covale ? ? A LEU 43 C ? ? ? 1_555 A MSE 44 N ? ? A LEU 40 A MSE 41 1_555 ? ? ? ? ? ? ? 1.340 ? covale4 covale ? ? A MSE 44 C ? ? ? 1_555 A LEU 45 N ? ? A MSE 41 A LEU 42 1_555 ? ? ? ? ? ? ? 1.330 ? covale5 covale ? ? B HIS 3 C ? ? ? 1_555 B MSE 4 N ? ? B HIS 181 B MSE 182 1_555 ? ? ? ? ? ? ? 1.332 ? covale6 covale ? ? B MSE 4 C ? ? ? 1_555 B LEU 5 N ? ? B MSE 182 B LEU 183 1_555 ? ? ? ? ? ? ? 1.335 ? covale7 covale ? ? B ALA 22 C ? ? ? 1_555 B MSE 23 N ? ? B ALA 200 B MSE 201 1_555 ? ? ? ? ? ? ? 1.332 ? covale8 covale ? ? B MSE 23 C ? ? ? 1_555 B GLY 24 N ? ? B MSE 201 B GLY 202 1_555 ? ? ? ? ? ? ? 1.318 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE SO4 B1232' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 GLN A 18 ? GLN A 15 . ? 1_555 ? 2 AC1 5 MSE B 23 ? MSE B 201 . ? 1_555 ? 3 AC1 5 GLY B 24 ? GLY B 202 . ? 1_555 ? 4 AC1 5 HOH E . ? HOH B 1008 . ? 1_555 ? 5 AC1 5 HOH E . ? HOH B 1009 . ? 1_555 ? # _database_PDB_matrix.entry_id 2V6X _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2V6X _atom_sites.fract_transf_matrix[1][1] 0.012797 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012155 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.046568 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -2 ? ? ? A . n A 1 2 SER 2 -1 -1 SER SER A . n A 1 3 HIS 3 0 0 HIS HIS A . n A 1 4 MSE 4 1 1 MSE MSE A . n A 1 5 SER 5 2 2 SER SER A . n A 1 6 THR 6 3 3 THR THR A . n A 1 7 GLY 7 4 4 GLY GLY A . n A 1 8 ASP 8 5 5 ASP ASP A . n A 1 9 PHE 9 6 6 PHE PHE A . n A 1 10 LEU 10 7 7 LEU LEU A . n A 1 11 THR 11 8 8 THR THR A . n A 1 12 LYS 12 9 9 LYS LYS A . n A 1 13 GLY 13 10 10 GLY GLY A . n A 1 14 ILE 14 11 11 ILE ILE A . n A 1 15 GLU 15 12 12 GLU GLU A . n A 1 16 LEU 16 13 13 LEU LEU A . n A 1 17 VAL 17 14 14 VAL VAL A . n A 1 18 GLN 18 15 15 GLN GLN A . n A 1 19 LYS 19 16 16 LYS LYS A . n A 1 20 ALA 20 17 17 ALA ALA A . n A 1 21 ILE 21 18 18 ILE ILE A . n A 1 22 ASP 22 19 19 ASP ASP A . n A 1 23 LEU 23 20 20 LEU LEU A . n A 1 24 ASP 24 21 21 ASP ASP A . n A 1 25 THR 25 22 22 THR THR A . n A 1 26 ALA 26 23 23 ALA ALA A . n A 1 27 THR 27 24 24 THR THR A . n A 1 28 GLN 28 25 25 GLN GLN A . n A 1 29 TYR 29 26 26 TYR TYR A . n A 1 30 GLU 30 27 27 GLU GLU A . n A 1 31 GLU 31 28 28 GLU GLU A . n A 1 32 ALA 32 29 29 ALA ALA A . n A 1 33 TYR 33 30 30 TYR TYR A . n A 1 34 THR 34 31 31 THR THR A . n A 1 35 ALA 35 32 32 ALA ALA A . n A 1 36 TYR 36 33 33 TYR TYR A . n A 1 37 TYR 37 34 34 TYR TYR A . n A 1 38 ASN 38 35 35 ASN ASN A . n A 1 39 GLY 39 36 36 GLY GLY A . n A 1 40 LEU 40 37 37 LEU LEU A . n A 1 41 ASP 41 38 38 ASP ASP A . n A 1 42 TYR 42 39 39 TYR TYR A . n A 1 43 LEU 43 40 40 LEU LEU A . n A 1 44 MSE 44 41 41 MSE MSE A . n A 1 45 LEU 45 42 42 LEU LEU A . n A 1 46 ALA 46 43 43 ALA ALA A . n A 1 47 LEU 47 44 44 LEU LEU A . n A 1 48 LYS 48 45 45 LYS LYS A . n A 1 49 TYR 49 46 46 TYR TYR A . n A 1 50 GLU 50 47 47 GLU GLU A . n A 1 51 LYS 51 48 48 LYS LYS A . n A 1 52 ASN 52 49 49 ASN ASN A . n A 1 53 PRO 53 50 50 PRO PRO A . n A 1 54 LYS 54 51 51 LYS LYS A . n A 1 55 SER 55 52 52 SER SER A . n A 1 56 LYS 56 53 53 LYS LYS A . n A 1 57 ASP 57 54 54 ASP ASP A . n A 1 58 LEU 58 55 55 LEU LEU A . n A 1 59 ILE 59 56 56 ILE ILE A . n A 1 60 ARG 60 57 57 ARG ARG A . n A 1 61 ALA 61 58 58 ALA ALA A . n A 1 62 LYS 62 59 59 LYS LYS A . n A 1 63 PHE 63 60 60 PHE PHE A . n A 1 64 THR 64 61 61 THR THR A . n A 1 65 GLU 65 62 62 GLU GLU A . n A 1 66 TYR 66 63 63 TYR TYR A . n A 1 67 LEU 67 64 64 LEU LEU A . n A 1 68 ASN 68 65 65 ASN ASN A . n A 1 69 ARG 69 66 66 ARG ARG A . n A 1 70 ALA 70 67 67 ALA ALA A . n A 1 71 GLU 71 68 68 GLU GLU A . n A 1 72 GLN 72 69 69 GLN GLN A . n A 1 73 LEU 73 70 70 LEU LEU A . n A 1 74 LYS 74 71 71 LYS LYS A . n A 1 75 LYS 75 72 72 LYS LYS A . n A 1 76 HIS 76 73 73 HIS HIS A . n A 1 77 LEU 77 74 74 LEU LEU A . n A 1 78 GLU 78 75 75 GLU GLU A . n A 1 79 SER 79 76 76 SER SER A . n A 1 80 GLU 80 77 77 GLU GLU A . n A 1 81 GLU 81 78 78 GLU GLU A . n A 1 82 ALA 82 79 79 ALA ALA A . n A 1 83 ASN 83 80 80 ASN ASN A . n A 1 84 ALA 84 81 ? ? ? A . n A 1 85 ALA 85 82 ? ? ? A . n B 2 1 GLY 1 179 ? ? ? B . n B 2 2 SER 2 180 ? ? ? B . n B 2 3 HIS 3 181 181 HIS HIS B . n B 2 4 MSE 4 182 182 MSE MSE B . n B 2 5 LEU 5 183 183 LEU LEU B . n B 2 6 GLN 6 184 184 GLN GLN B . n B 2 7 SER 7 185 185 SER SER B . n B 2 8 THR 8 186 186 THR THR B . n B 2 9 PRO 9 187 187 PRO PRO B . n B 2 10 GLN 10 188 188 GLN GLN B . n B 2 11 ASN 11 189 189 ASN ASN B . n B 2 12 LEU 12 190 190 LEU LEU B . n B 2 13 VAL 13 191 191 VAL VAL B . n B 2 14 SER 14 192 192 SER SER B . n B 2 15 ASN 15 193 193 ASN ASN B . n B 2 16 ALA 16 194 194 ALA ALA B . n B 2 17 PRO 17 195 195 PRO PRO B . n B 2 18 ILE 18 196 196 ILE ILE B . n B 2 19 ALA 19 197 197 ALA ALA B . n B 2 20 GLU 20 198 198 GLU GLU B . n B 2 21 THR 21 199 199 THR THR B . n B 2 22 ALA 22 200 200 ALA ALA B . n B 2 23 MSE 23 201 201 MSE MSE B . n B 2 24 GLY 24 202 202 GLY GLY B . n B 2 25 ILE 25 203 203 ILE ILE B . n B 2 26 ALA 26 204 204 ALA ALA B . n B 2 27 GLU 27 205 205 GLU GLU B . n B 2 28 PRO 28 206 206 PRO PRO B . n B 2 29 ILE 29 207 ? ? ? B . n B 2 30 GLY 30 208 ? ? ? B . n B 2 31 ALA 31 209 ? ? ? B . n B 2 32 GLY 32 210 ? ? ? B . n B 2 33 SER 33 211 ? ? ? B . n B 2 34 GLU 34 212 ? ? ? B . n B 2 35 PHE 35 213 ? ? ? B . n B 2 36 HIS 36 214 ? ? ? B . n B 2 37 GLY 37 215 ? ? ? B . n B 2 38 ASN 38 216 ? ? ? B . n B 2 39 PRO 39 217 217 PRO PRO B . n B 2 40 ASP 40 218 218 ASP ASP B . n B 2 41 ASP 41 219 219 ASP ASP B . n B 2 42 ASP 42 220 220 ASP ASP B . n B 2 43 LEU 43 221 221 LEU LEU B . n B 2 44 GLN 44 222 222 GLN GLN B . n B 2 45 ALA 45 223 223 ALA ALA B . n B 2 46 ARG 46 224 224 ARG ARG B . n B 2 47 LEU 47 225 225 LEU LEU B . n B 2 48 ASN 48 226 226 ASN ASN B . n B 2 49 THR 49 227 227 THR THR B . n B 2 50 LEU 50 228 228 LEU LEU B . n B 2 51 LYS 51 229 229 LYS LYS B . n B 2 52 LYS 52 230 230 LYS LYS B . n B 2 53 GLN 53 231 231 GLN GLN B . n B 2 54 THR 54 232 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 1 1232 1232 SO4 SO4 B . D 4 HOH 1 1001 1001 HOH HOH A . D 4 HOH 2 1002 1002 HOH HOH A . D 4 HOH 3 1003 1003 HOH HOH A . D 4 HOH 4 1004 1004 HOH HOH A . D 4 HOH 5 1005 1005 HOH HOH A . D 4 HOH 6 1006 1006 HOH HOH A . D 4 HOH 7 1007 1007 HOH HOH A . D 4 HOH 8 1008 1008 HOH HOH A . D 4 HOH 9 1009 1009 HOH HOH A . D 4 HOH 10 1010 1010 HOH HOH A . D 4 HOH 11 1011 1011 HOH HOH A . D 4 HOH 12 1012 1012 HOH HOH A . D 4 HOH 13 1013 1013 HOH HOH A . D 4 HOH 14 1014 1014 HOH HOH A . D 4 HOH 15 1015 1015 HOH HOH A . D 4 HOH 16 1016 1016 HOH HOH A . D 4 HOH 17 1017 1017 HOH HOH A . D 4 HOH 18 1018 1018 HOH HOH A . D 4 HOH 19 1019 1019 HOH HOH A . D 4 HOH 20 1020 1020 HOH HOH A . D 4 HOH 21 1021 1021 HOH HOH A . D 4 HOH 22 1022 1022 HOH HOH A . D 4 HOH 23 1023 1023 HOH HOH A . E 4 HOH 1 1001 1001 HOH HOH B . E 4 HOH 2 1002 1002 HOH HOH B . E 4 HOH 3 1003 1003 HOH HOH B . E 4 HOH 4 1004 1004 HOH HOH B . E 4 HOH 5 1005 1005 HOH HOH B . E 4 HOH 6 1006 1006 HOH HOH B . E 4 HOH 7 1007 1007 HOH HOH B . E 4 HOH 8 1008 1008 HOH HOH B . E 4 HOH 9 1009 1009 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 4 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 44 A MSE 41 ? MET SELENOMETHIONINE 3 B MSE 4 B MSE 182 ? MET SELENOMETHIONINE 4 B MSE 23 B MSE 201 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3020 ? 1 MORE -18.2 ? 1 'SSA (A^2)' 9990 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-16 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-06-28 4 'Structure model' 1 3 2018-01-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Source and taxonomy' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' entity_src_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.name' 2 4 'Structure model' '_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id' 3 4 'Structure model' '_entity_src_gen.pdbx_host_org_scientific_name' 4 4 'Structure model' '_entity_src_gen.pdbx_host_org_strain' 5 4 'Structure model' '_entity_src_gen.pdbx_host_org_variant' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 32.2842 25.4404 38.2005 -.0389 -.0390 -.0901 .0025 .0001 .0291 2.5311 1.5648 .6999 .6238 -.3311 .3505 -.0750 -.0502 .0999 -.1098 .1250 -.0049 .0223 -.0197 -.0499 'X-RAY DIFFRACTION' 2 ? refined 52.2448 29.5992 43.9663 -.0857 -.0490 -.0831 -.0120 -.0028 -.0515 25.8261 3.3446 5.3548 -6.6176 -10.5281 3.3369 .7420 -.5827 .9180 -.2828 -.2930 -.2684 -.4813 .0780 -.4490 'X-RAY DIFFRACTION' 3 ? refined 32.0943 16.2354 46.8005 -.0869 -.0170 -.1288 -.0044 .0179 .0031 25.9606 8.2359 7.5440 9.5520 4.0357 -1.1826 -.5471 -.2061 -1.4406 -.5140 .3731 -.6739 .0957 -.0546 .1740 'X-RAY DIFFRACTION' 4 ? refined 27.9450 35.4968 35.3560 .0489 -.0639 .2208 -.1903 -.2899 .3115 30.0462 27.3093 3.9751 8.3824 2.3039 -.8659 -1.7987 1.7128 2.7235 -1.4646 1.8775 2.4026 -.6202 -.0698 -.0789 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A -1 ? ? A 80 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 181 ? ? B 194 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 B 195 ? ? B 206 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 B 217 ? ? B 231 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SCALA 'data reduction' . ? 1 TRUNCATE 'data scaling' . ? 2 SHARP phasing . ? 3 ARP/wARP phasing . ? 4 REFMAC refinement 5.2.0019 ? 5 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 CG2 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 THR _pdbx_validate_symm_contact.auth_seq_id_1 31 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 1003 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 1_554 _pdbx_validate_symm_contact.dist 2.06 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id SER _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 2 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -101.07 _pdbx_validate_torsion.psi 79.28 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -2 ? A GLY 1 2 1 Y 1 A ALA 81 ? A ALA 84 3 1 Y 1 A ALA 82 ? A ALA 85 4 1 Y 1 B GLY 179 ? B GLY 1 5 1 Y 1 B SER 180 ? B SER 2 6 1 Y 1 B ILE 207 ? B ILE 29 7 1 Y 1 B GLY 208 ? B GLY 30 8 1 Y 1 B ALA 209 ? B ALA 31 9 1 Y 1 B GLY 210 ? B GLY 32 10 1 Y 1 B SER 211 ? B SER 33 11 1 Y 1 B GLU 212 ? B GLU 34 12 1 Y 1 B PHE 213 ? B PHE 35 13 1 Y 1 B HIS 214 ? B HIS 36 14 1 Y 1 B GLY 215 ? B GLY 37 15 1 Y 1 B ASN 216 ? B ASN 38 16 1 Y 1 B THR 232 ? B THR 54 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SULFATE ION' SO4 4 water HOH #