HEADER NUCLEAR PROTEIN 25-JUL-07 2V71 TITLE COILED-COIL REGION OF NUDEL COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR DISTRIBUTION PROTEIN NUDE-LIKE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: COILED-COIL DOMAIN, RESIDUES 8-193; COMPND 5 SYNONYM: PROTEIN NUDEL, NUDEL; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIPL; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PHIS PARALLEL 1 KEYWDS DEVELOPMENTAL PROTEIN, NUCLEAR PROTEIN, NEUROGENESIS, CYTOSKELETON, KEYWDS 2 LIS1 BINDING, DIFFERENTIATION, PHOSPHORYLATION, TRANSPORT, KEYWDS 3 MICROTUBULE, MICROTUBULE ASSOCIATED MIGRATION EXPDTA X-RAY DIFFRACTION AUTHOR U.DEREWENDA,D.R.COOPER,M.H.KIM,Z.S.DEREWENDA REVDAT 5 28-JUN-17 2V71 1 REMARK REVDAT 4 13-JUL-11 2V71 1 VERSN REVDAT 3 07-APR-09 2V71 1 REMARK REVDAT 2 24-FEB-09 2V71 1 VERSN REVDAT 1 27-NOV-07 2V71 0 JRNL AUTH U.DEREWENDA,C.TARRICONE,W.C.CHOI,D.R.COOPER,S.LUKASIK, JRNL AUTH 2 F.PERRINA,A.TRIPATHY,M.H.KIM,D.S.CAFISO,A.MUSACCHIO, JRNL AUTH 3 Z.S.DEREWENDA JRNL TITL THE STRUCTURE OF THE COILED-COIL DOMAIN OF NDEL1 AND THE JRNL TITL 2 BASIS OF ITS INTERACTION WITH LIS1, THE CAUSAL PROTEIN OF JRNL TITL 3 MILLER-DIEKER LISSENCEPHALY. JRNL REF STRUCTURE V. 15 1467 2007 JRNL REFN ISSN 0969-2126 JRNL PMID 17997972 JRNL DOI 10.1016/J.STR.2007.09.015 REMARK 2 REMARK 2 RESOLUTION. 2.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 123.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 21863 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.255 REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1172 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.24 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.30 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1458 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3450 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.3840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2671 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2699 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1887 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3616 ; 2.367 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4594 ; 1.463 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 318 ; 4.190 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 168 ;34.938 ;25.714 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 548 ;16.877 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;13.550 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 387 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3018 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 522 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 582 ; 0.223 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1648 ; 0.143 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1290 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1515 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 33 ; 0.096 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 27 ; 0.214 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 69 ; 0.222 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.228 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 23 REMARK 3 ORIGIN FOR THE GROUP (A): -59.3794 25.7610 199.0257 REMARK 3 T TENSOR REMARK 3 T11: -0.2583 T22: -0.3238 REMARK 3 T33: -0.2149 T12: 0.0169 REMARK 3 T13: -0.0755 T23: -0.0209 REMARK 3 L TENSOR REMARK 3 L11: 21.0264 L22: 3.3155 REMARK 3 L33: 19.2842 L12: 6.8393 REMARK 3 L13: -14.3290 L23: -1.4385 REMARK 3 S TENSOR REMARK 3 S11: -0.2617 S12: -0.0239 S13: -0.2454 REMARK 3 S21: 0.5505 S22: -0.1793 S23: 0.3476 REMARK 3 S31: 0.6064 S32: -0.2268 S33: 0.4410 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 42 REMARK 3 ORIGIN FOR THE GROUP (A): -41.3749 20.7114 183.5780 REMARK 3 T TENSOR REMARK 3 T11: -0.2897 T22: -0.3462 REMARK 3 T33: -0.1568 T12: 0.0386 REMARK 3 T13: -0.1405 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 21.8198 L22: 4.1244 REMARK 3 L33: 23.0088 L12: -5.0071 REMARK 3 L13: -20.9298 L23: 5.0277 REMARK 3 S TENSOR REMARK 3 S11: -0.4989 S12: -1.1664 S13: -0.6046 REMARK 3 S21: 0.2276 S22: 0.3549 S23: 0.0829 REMARK 3 S31: 0.5870 S32: 0.9267 S33: 0.1439 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 60 REMARK 3 ORIGIN FOR THE GROUP (A): -22.0799 18.4341 163.8174 REMARK 3 T TENSOR REMARK 3 T11: -0.1772 T22: -0.2377 REMARK 3 T33: -0.1396 T12: -0.0508 REMARK 3 T13: 0.0257 T23: -0.0395 REMARK 3 L TENSOR REMARK 3 L11: 45.2576 L22: 2.1247 REMARK 3 L33: 53.0176 L12: 1.6421 REMARK 3 L13: -43.8596 L23: 1.0477 REMARK 3 S TENSOR REMARK 3 S11: 0.1424 S12: -0.4731 S13: -0.5858 REMARK 3 S21: -0.3174 S22: -0.3031 S23: -0.4997 REMARK 3 S31: -1.2150 S32: 1.0611 S33: 0.1607 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 61 A 116 REMARK 3 ORIGIN FOR THE GROUP (A): 5.1446 17.3396 116.6056 REMARK 3 T TENSOR REMARK 3 T11: 0.3186 T22: 0.5762 REMARK 3 T33: 0.0690 T12: 0.0625 REMARK 3 T13: 0.1982 T23: -0.0503 REMARK 3 L TENSOR REMARK 3 L11: 13.1693 L22: 0.6180 REMARK 3 L33: 44.3706 L12: -1.9790 REMARK 3 L13: -23.7112 L23: 4.2968 REMARK 3 S TENSOR REMARK 3 S11: 0.6489 S12: 0.6657 S13: 0.4484 REMARK 3 S21: 0.1982 S22: -0.2624 S23: 0.2976 REMARK 3 S31: -1.5229 S32: -1.4995 S33: -0.3865 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 117 A 154 REMARK 3 ORIGIN FOR THE GROUP (A): 36.1655 7.2421 54.0785 REMARK 3 T TENSOR REMARK 3 T11: -0.0742 T22: -0.2409 REMARK 3 T33: -0.1248 T12: -0.1081 REMARK 3 T13: -0.0378 T23: -0.0769 REMARK 3 L TENSOR REMARK 3 L11: 17.6916 L22: 0.6276 REMARK 3 L33: 46.8449 L12: -2.0835 REMARK 3 L13: -27.6061 L23: 2.8917 REMARK 3 S TENSOR REMARK 3 S11: -0.5981 S12: 0.7440 S13: -0.6220 REMARK 3 S21: 0.1305 S22: -0.1404 S23: 0.0449 REMARK 3 S31: 1.6940 S32: -1.2793 S33: 0.7384 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 155 A 167 REMARK 3 ORIGIN FOR THE GROUP (A): 60.1171 6.2599 25.1958 REMARK 3 T TENSOR REMARK 3 T11: 0.1883 T22: 0.1563 REMARK 3 T33: 0.2146 T12: 0.0319 REMARK 3 T13: 0.0385 T23: -0.0518 REMARK 3 L TENSOR REMARK 3 L11: 64.2159 L22: 19.8625 REMARK 3 L33: 69.9993 L12: 1.7761 REMARK 3 L13: -51.0057 L23: 1.8044 REMARK 3 S TENSOR REMARK 3 S11: -1.4201 S12: -0.0781 S13: -1.1755 REMARK 3 S21: -2.4226 S22: 0.3118 S23: -2.4359 REMARK 3 S31: 1.3495 S32: 1.1918 S33: 1.1083 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 23 REMARK 3 ORIGIN FOR THE GROUP (A): -54.7434 33.4640 200.8782 REMARK 3 T TENSOR REMARK 3 T11: -0.3558 T22: -0.2916 REMARK 3 T33: -0.2371 T12: 0.0120 REMARK 3 T13: -0.1530 T23: -0.0724 REMARK 3 L TENSOR REMARK 3 L11: 7.9319 L22: 9.9097 REMARK 3 L33: 8.9432 L12: -4.7055 REMARK 3 L13: -7.2718 L23: 6.7847 REMARK 3 S TENSOR REMARK 3 S11: 0.0418 S12: -0.4533 S13: -0.0399 REMARK 3 S21: 0.4632 S22: -0.0472 S23: 0.0076 REMARK 3 S31: 0.2183 S32: 0.1807 S33: 0.0054 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 24 B 45 REMARK 3 ORIGIN FOR THE GROUP (A): -44.0885 26.1773 176.5086 REMARK 3 T TENSOR REMARK 3 T11: -0.2100 T22: -0.2913 REMARK 3 T33: -0.1743 T12: 0.0930 REMARK 3 T13: -0.0782 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 15.3383 L22: 7.7538 REMARK 3 L33: 51.4368 L12: -7.9957 REMARK 3 L13: -25.1670 L23: 15.2386 REMARK 3 S TENSOR REMARK 3 S11: 1.0118 S12: 1.2901 S13: 0.4714 REMARK 3 S21: -0.4192 S22: -0.8002 S23: 0.0380 REMARK 3 S31: -1.5123 S32: -2.2281 S33: -0.2116 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 46 B 85 REMARK 3 ORIGIN FOR THE GROUP (A): -13.7694 14.5779 141.7386 REMARK 3 T TENSOR REMARK 3 T11: 0.2022 T22: 0.3755 REMARK 3 T33: 0.0073 T12: -0.1957 REMARK 3 T13: 0.1654 T23: -0.2446 REMARK 3 L TENSOR REMARK 3 L11: 36.0493 L22: 4.1358 REMARK 3 L33: 37.5085 L12: -10.0338 REMARK 3 L13: -36.3303 L23: 9.0156 REMARK 3 S TENSOR REMARK 3 S11: -0.2242 S12: 0.9098 S13: -0.6723 REMARK 3 S21: -0.6155 S22: -0.3541 S23: -0.0347 REMARK 3 S31: -0.2437 S32: -0.4073 S33: 0.5783 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 86 B 133 REMARK 3 ORIGIN FOR THE GROUP (A): 27.8168 16.0736 93.1158 REMARK 3 T TENSOR REMARK 3 T11: -0.0848 T22: 0.0264 REMARK 3 T33: -0.1931 T12: -0.0768 REMARK 3 T13: -0.0025 T23: -0.0311 REMARK 3 L TENSOR REMARK 3 L11: 12.0545 L22: 1.4548 REMARK 3 L33: 31.0992 L12: 2.5329 REMARK 3 L13: -18.8682 L23: -4.7033 REMARK 3 S TENSOR REMARK 3 S11: -0.1066 S12: -1.2044 S13: -0.2603 REMARK 3 S21: 0.3921 S22: -0.2562 S23: 0.1413 REMARK 3 S31: -0.1714 S32: 1.0446 S33: 0.3628 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 134 B 149 REMARK 3 ORIGIN FOR THE GROUP (A): 46.5436 21.5813 49.6780 REMARK 3 T TENSOR REMARK 3 T11: -0.1787 T22: -0.0501 REMARK 3 T33: -0.1730 T12: -0.0792 REMARK 3 T13: -0.0426 T23: -0.0582 REMARK 3 L TENSOR REMARK 3 L11: 3.9448 L22: 2.1511 REMARK 3 L33: 85.2998 L12: 0.7663 REMARK 3 L13: -17.9398 L23: -6.2122 REMARK 3 S TENSOR REMARK 3 S11: 0.3192 S12: -0.7451 S13: 0.2365 REMARK 3 S21: -0.0693 S22: -0.0444 S23: -0.3543 REMARK 3 S31: -1.4448 S32: 3.2908 S33: -0.2748 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 150 B 167 REMARK 3 ORIGIN FOR THE GROUP (A): 51.8274 22.8914 24.9153 REMARK 3 T TENSOR REMARK 3 T11: 0.2722 T22: 0.1921 REMARK 3 T33: 0.1005 T12: -0.0383 REMARK 3 T13: 0.1844 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 8.1321 L22: 9.3975 REMARK 3 L33: 69.6098 L12: -2.6622 REMARK 3 L13: -14.0837 L23: 0.2960 REMARK 3 S TENSOR REMARK 3 S11: 1.2765 S12: 0.7843 S13: 0.5261 REMARK 3 S21: -1.0594 S22: -0.0846 S23: -0.4745 REMARK 3 S31: -4.3394 S32: 0.5781 S33: -1.1919 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2V71 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1290033277. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-05; NULL REMARK 200 TEMPERATURE (KELVIN) : 110; NULL REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N; Y REMARK 200 RADIATION SOURCE : ROTATING ANODE; APS REMARK 200 BEAMLINE : NULL; 22-ID REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR591; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418; 0.97928, 0.97945, REMARK 200 0.97175 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : MIRRORS; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU IMAGE PLATE; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23115 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.340 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18-22% TERT-BUTANOL, 100 MM SODIUM REMARK 280 CITRATE PH 6.0, 10 MM COCL2, AND 10 MM SPERMINE. BEFORE FREEZING, REMARK 280 TERT-BUTANOL WAS SLOWLY EXCHANGED FOR 30% MPD REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.93600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.48750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.93600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.48750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 23830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 52080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -203.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 73.96043 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 123.35502 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LEU 24 TO MSE REMARK 400 ENGINEERED RESIDUE IN CHAIN A, VAL 134 TO MSE REMARK 400 ENGINEERED RESIDUE IN CHAIN B, LEU 24 TO MSE REMARK 400 ENGINEERED RESIDUE IN CHAIN B, VAL 134 TO MSE REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 5 REMARK 465 ALA A 6 REMARK 465 MSE A 7 REMARK 465 GLN A 168 REMARK 465 ARG A 169 REMARK 465 LEU A 170 REMARK 465 LYS A 171 REMARK 465 ASP A 172 REMARK 465 GLU A 173 REMARK 465 ALA A 174 REMARK 465 ARG A 175 REMARK 465 ASP A 176 REMARK 465 LEU A 177 REMARK 465 ARG A 178 REMARK 465 GLN A 179 REMARK 465 GLU A 180 REMARK 465 LEU A 181 REMARK 465 ALA A 182 REMARK 465 VAL A 183 REMARK 465 ARG A 184 REMARK 465 GLU A 185 REMARK 465 ARG A 186 REMARK 465 GLN A 187 REMARK 465 GLN A 188 REMARK 465 GLU A 189 REMARK 465 VAL A 190 REMARK 465 THR A 191 REMARK 465 ARG A 192 REMARK 465 LYS A 193 REMARK 465 GLY B 5 REMARK 465 ALA B 6 REMARK 465 MSE B 7 REMARK 465 GLN B 168 REMARK 465 ARG B 169 REMARK 465 LEU B 170 REMARK 465 LYS B 171 REMARK 465 ASP B 172 REMARK 465 GLU B 173 REMARK 465 ALA B 174 REMARK 465 ARG B 175 REMARK 465 ASP B 176 REMARK 465 LEU B 177 REMARK 465 ARG B 178 REMARK 465 GLN B 179 REMARK 465 GLU B 180 REMARK 465 LEU B 181 REMARK 465 ALA B 182 REMARK 465 VAL B 183 REMARK 465 ARG B 184 REMARK 465 GLU B 185 REMARK 465 ARG B 186 REMARK 465 GLN B 187 REMARK 465 GLN B 188 REMARK 465 GLU B 189 REMARK 465 VAL B 190 REMARK 465 THR B 191 REMARK 465 ARG B 192 REMARK 465 LYS B 193 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 166 OG REMARK 470 VAL A 167 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 8 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 LEU A 97 CB - CG - CD1 ANGL. DEV. = -10.5 DEGREES REMARK 500 ASP A 99 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 127 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP A 138 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 142 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 149 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 149 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 MSE B 24 CB - CG - SE ANGL. DEV. = -23.0 DEGREES REMARK 500 ARG B 34 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 34 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 45 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ASP B 124 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 MSE B 134 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 ARG B 149 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 149 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 163 -65.61 -109.66 REMARK 500 VAL A 165 96.65 -52.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 METHIONINES INTRODUCED FOR PHASING PURPOSES DBREF 2V71 A 5 7 PDB 2V71 2V71 5 7 DBREF 2V71 A 8 193 UNP Q78PB6 NDEL1_RAT 8 193 DBREF 2V71 B 5 7 PDB 2V71 2V71 5 7 DBREF 2V71 B 8 193 UNP Q78PB6 NDEL1_RAT 8 193 SEQADV 2V71 MSE A 24 UNP Q78PB6 LEU 24 ENGINEERED MUTATION SEQADV 2V71 MSE A 134 UNP Q78PB6 VAL 134 ENGINEERED MUTATION SEQADV 2V71 MSE B 24 UNP Q78PB6 LEU 24 ENGINEERED MUTATION SEQADV 2V71 MSE B 134 UNP Q78PB6 VAL 134 ENGINEERED MUTATION SEQRES 1 A 189 GLY ALA MSE ASP PHE SER SER LEU LYS GLU GLU THR ALA SEQRES 2 A 189 TYR TRP LYS GLU LEU SER MSE LYS TYR LYS GLN SER PHE SEQRES 3 A 189 GLN GLU ALA ARG ASP GLU LEU VAL GLU PHE GLN GLU GLY SEQRES 4 A 189 SER ARG GLU LEU GLU ALA GLU LEU GLU ALA GLN LEU VAL SEQRES 5 A 189 GLN ALA GLU GLN ARG ASN ARG ASP LEU GLN ALA ASP ASN SEQRES 6 A 189 GLN ARG LEU LYS TYR GLU VAL GLU ALA LEU LYS GLU LYS SEQRES 7 A 189 LEU GLU HIS GLN TYR ALA GLN SER TYR LYS GLN VAL SER SEQRES 8 A 189 VAL LEU GLU ASP ASP LEU SER GLN THR ARG ALA ILE LYS SEQRES 9 A 189 GLU GLN LEU HIS LYS TYR VAL ARG GLU LEU GLU GLN ALA SEQRES 10 A 189 ASN ASP ASP LEU GLU ARG ALA LYS ARG ALA THR ILE MSE SEQRES 11 A 189 SER LEU GLU ASP PHE GLU GLN ARG LEU ASN GLN ALA ILE SEQRES 12 A 189 GLU ARG ASN ALA PHE LEU GLU SER GLU LEU ASP GLU LYS SEQRES 13 A 189 GLU SER LEU LEU VAL SER VAL GLN ARG LEU LYS ASP GLU SEQRES 14 A 189 ALA ARG ASP LEU ARG GLN GLU LEU ALA VAL ARG GLU ARG SEQRES 15 A 189 GLN GLN GLU VAL THR ARG LYS SEQRES 1 B 189 GLY ALA MSE ASP PHE SER SER LEU LYS GLU GLU THR ALA SEQRES 2 B 189 TYR TRP LYS GLU LEU SER MSE LYS TYR LYS GLN SER PHE SEQRES 3 B 189 GLN GLU ALA ARG ASP GLU LEU VAL GLU PHE GLN GLU GLY SEQRES 4 B 189 SER ARG GLU LEU GLU ALA GLU LEU GLU ALA GLN LEU VAL SEQRES 5 B 189 GLN ALA GLU GLN ARG ASN ARG ASP LEU GLN ALA ASP ASN SEQRES 6 B 189 GLN ARG LEU LYS TYR GLU VAL GLU ALA LEU LYS GLU LYS SEQRES 7 B 189 LEU GLU HIS GLN TYR ALA GLN SER TYR LYS GLN VAL SER SEQRES 8 B 189 VAL LEU GLU ASP ASP LEU SER GLN THR ARG ALA ILE LYS SEQRES 9 B 189 GLU GLN LEU HIS LYS TYR VAL ARG GLU LEU GLU GLN ALA SEQRES 10 B 189 ASN ASP ASP LEU GLU ARG ALA LYS ARG ALA THR ILE MSE SEQRES 11 B 189 SER LEU GLU ASP PHE GLU GLN ARG LEU ASN GLN ALA ILE SEQRES 12 B 189 GLU ARG ASN ALA PHE LEU GLU SER GLU LEU ASP GLU LYS SEQRES 13 B 189 GLU SER LEU LEU VAL SER VAL GLN ARG LEU LYS ASP GLU SEQRES 14 B 189 ALA ARG ASP LEU ARG GLN GLU LEU ALA VAL ARG GLU ARG SEQRES 15 B 189 GLN GLN GLU VAL THR ARG LYS MODRES 2V71 MSE A 24 MET SELENOMETHIONINE MODRES 2V71 MSE A 134 MET SELENOMETHIONINE MODRES 2V71 MSE B 24 MET SELENOMETHIONINE MODRES 2V71 MSE B 134 MET SELENOMETHIONINE HET MSE A 24 8 HET MSE A 134 8 HET MSE B 24 8 HET MSE B 134 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) HELIX 1 1 SER A 11 VAL A 165 1 155 HELIX 2 2 ASP B 8 VAL B 167 1 160 LINK C SER A 23 N MSE A 24 1555 1555 1.33 LINK C MSE A 24 N LYS A 25 1555 1555 1.33 LINK C ILE A 133 N MSE A 134 1555 1555 1.32 LINK C MSE A 134 N SER A 135 1555 1555 1.33 LINK C SER B 23 N MSE B 24 1555 1555 1.33 LINK C MSE B 24 N LYS B 25 1555 1555 1.33 LINK C ILE B 133 N MSE B 134 1555 1555 1.34 LINK C MSE B 134 N SER B 135 1555 1555 1.32 CRYST1 89.872 44.975 124.377 90.00 97.35 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011127 0.000000 0.001435 0.00000 SCALE2 0.000000 0.022235 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008107 0.00000