HEADER TRANSPORT PROTEIN 02-AUG-07 2V84 TITLE CRYSTAL STRUCTURE OF THE TP0655 (TPPOTD) LIPOPROTEIN OF TREPONEMA TITLE 2 PALLIDUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPERMIDINE/PUTRESCINE ABC TRANSPORTER, PERIPLASMIC BINDING COMPND 3 PROTEIN; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: RESIDUES 25-348; COMPND 6 SYNONYM: TP0655 LIPOPROTEIN, POTD; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: CONSTRUCT USED LACKS THE FIRST AMINO ACID RESIDUE COMPND 9 (I.E. CYSTEINE) WHICH IS POST-TRANSLATIONALLY ACYLATED. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TREPONEMA PALLIDUM; SOURCE 3 ORGANISM_TAXID: 243276; SOURCE 4 STRAIN: NICHOLS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-AI; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PIVEX2.4D; SOURCE 9 OTHER_DETAILS: NICHOLS STRAIN ISOLATED FROM CEREBROSPINAL FLUID OF A SOURCE 10 NEUROSYPHILIS PATIENT KEYWDS ABC TRANSPORTER, POLYAMINE BINDING, TREPONEMA PALLIDUM, SYPHILIS, KEYWDS 2 SPERMIDINE, PUTRESCINE, LIPOPROTEIN, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.MACHIUS,C.A.BRAUTIGAM,D.R.TOMCHICK,P.WARD,Z.OTWINOWSKI,J.S.BLEVINE, AUTHOR 2 R.K.DEKA,M.V.NORGARD REVDAT 7 08-MAY-24 2V84 1 REMARK REVDAT 6 22-MAY-19 2V84 1 REMARK REVDAT 5 08-MAY-19 2V84 1 REMARK REVDAT 4 13-JUL-11 2V84 1 VERSN REVDAT 3 24-FEB-09 2V84 1 VERSN REVDAT 2 16-OCT-07 2V84 1 JRNL REVDAT 1 25-SEP-07 2V84 0 JRNL AUTH M.MACHIUS,C.A.BRAUTIGAM,D.R.TOMCHICK,P.WARD,Z.OTWINOWSKI, JRNL AUTH 2 J.S.BLEVINS,R.K.DEKA,M.V.NORGARD JRNL TITL STRUCTURAL AND BIOCHEMICAL BASIS FOR POLYAMINE BINDING TO JRNL TITL 2 THE TP0655 LIPOPROTEIN OF TREPONEMA PALLIDUM: PUTATIVE ROLE JRNL TITL 3 FOR TP0655 (TPPOTD) AS A POLYAMINE RECEPTOR. JRNL REF J.MOL.BIOL. V. 373 681 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17868688 JRNL DOI 10.1016/J.JMB.2007.08.018 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 35504 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1893 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1065 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2575 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 128 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 29.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : -0.53000 REMARK 3 B33 (A**2) : 0.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.147 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.687 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2761 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3759 ; 1.289 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 336 ; 5.638 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;36.754 ;23.841 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 437 ;15.491 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;14.178 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 388 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2176 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1331 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1889 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 162 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 27 ; 0.256 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.184 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1692 ; 0.645 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2664 ; 1.075 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1231 ; 1.658 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1095 ; 2.415 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 132 REMARK 3 ORIGIN FOR THE GROUP (A): -3.2532 16.4998 -9.1786 REMARK 3 T TENSOR REMARK 3 T11: -0.1420 T22: 0.0148 REMARK 3 T33: -0.0766 T12: 0.0168 REMARK 3 T13: 0.0040 T23: 0.0546 REMARK 3 L TENSOR REMARK 3 L11: 1.7410 L22: 5.8312 REMARK 3 L33: 2.5227 L12: -2.8527 REMARK 3 L13: 1.6294 L23: -3.3556 REMARK 3 S TENSOR REMARK 3 S11: -0.3670 S12: -0.2793 S13: -0.2179 REMARK 3 S21: 0.0771 S22: 0.5633 S23: 0.2933 REMARK 3 S31: -0.0498 S32: -0.3468 S33: -0.1964 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 133 A 261 REMARK 3 ORIGIN FOR THE GROUP (A): -8.6007 30.4491 -15.4555 REMARK 3 T TENSOR REMARK 3 T11: -0.0998 T22: -0.0167 REMARK 3 T33: -0.1082 T12: -0.0142 REMARK 3 T13: -0.0809 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 1.6035 L22: 4.0781 REMARK 3 L33: 1.4606 L12: -1.9209 REMARK 3 L13: 0.4772 L23: -1.9053 REMARK 3 S TENSOR REMARK 3 S11: -0.2004 S12: -0.1710 S13: 0.0209 REMARK 3 S21: -0.0260 S22: 0.2788 S23: -0.0352 REMARK 3 S31: -0.0540 S32: -0.2935 S33: -0.0783 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 262 A 325 REMARK 3 ORIGIN FOR THE GROUP (A): -3.1407 22.4842 -16.0248 REMARK 3 T TENSOR REMARK 3 T11: -0.1728 T22: -0.1195 REMARK 3 T33: -0.1268 T12: -0.0496 REMARK 3 T13: -0.0880 T23: 0.0252 REMARK 3 L TENSOR REMARK 3 L11: 1.0550 L22: 8.4780 REMARK 3 L33: 1.5465 L12: -2.1712 REMARK 3 L13: -0.1818 L23: -0.6710 REMARK 3 S TENSOR REMARK 3 S11: -0.0028 S12: -0.1538 S13: -0.0859 REMARK 3 S21: -0.3301 S22: 0.0470 S23: -0.2484 REMARK 3 S31: 0.3070 S32: -0.0194 S33: -0.0442 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2V84 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1290033360. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00869 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39206 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 31.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 39.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.83000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: PHASES WERE OBTAINED BY A SULFUR-SAD EXPERIMENT USING CU-K REMARK 200 -ALPHA RADIATION FROM A RIGAKU FR-E SUPERBRIGHT X-RAY GENERATOR REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN AT 20 DEGRRES C REMARK 280 USING THE VAPOR DIFFUSION METHOD IN HANGING DROP MODE BY MIXING REMARK 280 1 MICROLITER PROTEIN (20 MG/ML) IN 20 MM HEPES, PH 7.0, 0.1 M REMARK 280 NACL, 2 MM BETA-OCTYL GLUCOSIDE WITH 1 MICROLITER RESERVOIR REMARK 280 SOLUTION (10-12% (W/V) PEG 20K, 0.1 M MES, PH 6.5) AND REMARK 280 EQUILIBRATING AGAINST 1 ML OF RESERVOIR SOLUTION. CRYSTALS REMARK 280 APPEARED WITHIN SEVERAL HOURS AND GREW TO A FINAL SIZE OF 0.2 X REMARK 280 0.2 X 0.8 MM IN ABOUT 2 DAYS. THE CRYSTALS WERE CRYO-PROTECTED REMARK 280 IN RESERVOIR SOLUTION SUPPLEMENTED WITH 20% (V/V) ETHYLENE REMARK 280 GLYCOL, AND THEN FLASH-COOLED IN LIQUID NITROGEN., VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.80500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.75000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.13500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.75000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.80500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.13500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -17 REMARK 465 SER A -16 REMARK 465 GLY A -15 REMARK 465 SER A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 SER A -7 REMARK 465 SER A -6 REMARK 465 GLY A -5 REMARK 465 ILE A -4 REMARK 465 GLU A -3 REMARK 465 GLY A -2 REMARK 465 ARG A -1 REMARK 465 GLY A 0 REMARK 465 ARG A 1 REMARK 465 LEU A 2 REMARK 465 GLN A 3 REMARK 465 THR A 4 REMARK 465 ARG A 5 REMARK 465 GLN A 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 16 -10.37 72.21 REMARK 500 ILE A 51 107.53 -28.83 REMARK 500 ASP A 100 65.01 -162.81 REMARK 500 VAL A 163 -9.77 -59.88 REMARK 500 ALA A 311 -1.60 -47.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A1326 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A1327 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1328 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1330 DBREF 2V84 A -17 1 PDB 2V84 2V84 -17 1 DBREF 2V84 A 2 325 UNP O83661 O83661_TREPA 25 348 SEQRES 1 A 343 MET SER GLY SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 343 ILE GLU GLY ARG GLY ARG LEU GLN THR ARG GLN ASP VAL SEQRES 3 A 343 LEU TYR LEU TYR ASN TRP THR TYR TYR THR PRO THR SER SEQRES 4 A 343 LEU ILE LYS LYS PHE GLU GLN GLN TYR ASN VAL GLN VAL SEQRES 5 A 343 VAL TYR ASP ASP TYR ALA SER ASN GLU ASP MET PHE ALA SEQRES 6 A 343 LYS LEU SER ILE GLY ALA SER GLY TYR ASP LEU VAL VAL SEQRES 7 A 343 PRO SER GLY ASP PHE VAL SER ILE MET LYS ARG LYS HIS SEQRES 8 A 343 LEU LEU GLU LYS ILE ASP LEU SER LYS ILE PRO ASN VAL SEQRES 9 A 343 GLN PHE ILE LYS GLU SER VAL ARG ALA ARG ILE ALA TYR SEQRES 10 A 343 ASP PRO LYS MET GLU TYR SER VAL PRO TYR TYR LEU GLY SEQRES 11 A 343 ALA ALA GLY ILE ALA VAL ASN LYS LYS ALA VAL PRO SER SEQRES 12 A 343 TYR ALA ARG THR TRP SER ILE PHE SER ARG LYS ASP LEU SEQRES 13 A 343 ALA TYR ARG MET SER MET MET ASP ASP MET ARG GLU VAL SEQRES 14 A 343 MET GLY ALA ALA LEU ALA SER LEU GLY TYR ASN VAL ASN SEQRES 15 A 343 THR LYS ASN GLU GLN GLU LEU ALA GLN ALA ALA ILE LEU SEQRES 16 A 343 VAL THR ASP HIS TRP LYS PRO ASN LEU VAL LYS PHE ASP SEQRES 17 A 343 SER ASP GLY TYR ALA LYS SER PHE ALA SER GLY ASP PHE SEQRES 18 A 343 VAL VAL ALA HIS GLY PHE ALA GLU ALA PHE PHE ALA GLU SEQRES 19 A 343 THR PRO GLU ALA MET HIS GLU HIS ILE ASP PHE PHE ILE SEQRES 20 A 343 PRO GLN ASP VAL ALA SER PRO VAL TYR VAL ASP SER PHE SEQRES 21 A 343 CYS ILE PRO LYS GLY ALA ARG ASN ARG ASP LEU ALA HIS SEQRES 22 A 343 ALA PHE ILE ASN PHE PHE LEU GLU PRO ALA HIS TYR ALA SEQRES 23 A 343 GLU PHE LEU ASP THR PHE GLY PHE PRO SER THR ILE HIS SEQRES 24 A 343 ARG GLU ALA ALA ALA TYR GLN LYS LYS THR PRO TYR TYR SEQRES 25 A 343 SER GLU HIS ASP LEU GLU ARG GLY THR LEU LYS THR ASP SEQRES 26 A 343 VAL GLY ALA ALA ILE GLU HIS TYR ASN ALA HIS TRP ASN SEQRES 27 A 343 ALA VAL ARG PHE ARG HET MES A1326 12 HET MES A1327 12 HET CL A1328 1 HET CL A1329 1 HET CL A1330 1 HET CL A1331 1 HET CL A1332 1 HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM CL CHLORIDE ION FORMUL 2 MES 2(C6 H13 N O4 S) FORMUL 4 CL 5(CL 1-) FORMUL 9 HOH *128(H2 O) HELIX 1 1 PRO A 19 ASN A 31 1 13 HELIX 2 2 SER A 41 SER A 50 1 10 HELIX 3 3 SER A 62 LYS A 72 1 11 HELIX 4 4 ASP A 79 ILE A 83 5 5 HELIX 5 5 ILE A 83 PHE A 88 5 6 HELIX 6 6 LYS A 90 ILE A 97 1 8 HELIX 7 7 THR A 129 ARG A 135 5 7 HELIX 8 8 ARG A 135 ALA A 139 5 5 HELIX 9 9 ASP A 147 LEU A 159 1 13 HELIX 10 10 ASN A 167 TRP A 182 1 16 HELIX 11 11 LYS A 183 LEU A 186 5 4 HELIX 12 12 GLY A 193 SER A 200 1 8 HELIX 13 13 PHE A 209 THR A 217 1 9 HELIX 14 14 PRO A 218 GLU A 223 5 6 HELIX 15 15 ASN A 250 LEU A 262 1 13 HELIX 16 16 GLU A 263 GLY A 275 1 13 HELIX 17 17 GLU A 283 GLN A 288 5 6 HELIX 18 18 SER A 295 GLU A 300 5 6 HELIX 19 19 VAL A 308 ALA A 310 5 3 HELIX 20 20 ALA A 311 ARG A 325 1 15 SHEET 1 AA 3 GLN A 33 TYR A 39 0 SHEET 2 AA 3 VAL A 8 TRP A 14 1 O LEU A 9 N VAL A 35 SHEET 3 AA 3 LEU A 58 VAL A 59 1 O LEU A 58 N TYR A 12 SHEET 1 AB 2 LEU A 75 GLU A 76 0 SHEET 2 AB 2 ILE A 244 PRO A 245 -1 O ILE A 244 N GLU A 76 SHEET 1 AC 3 VAL A 107 GLY A 112 0 SHEET 2 AC 3 PRO A 236 PHE A 242 -1 O TYR A 238 N GLY A 112 SHEET 3 AC 3 THR A 303 LEU A 304 1 O THR A 303 N VAL A 237 SHEET 1 AD 5 LYS A 188 PHE A 189 0 SHEET 2 AD 5 MET A 142 MET A 144 1 N MET A 144 O LYS A 188 SHEET 3 AD 5 VAL A 205 GLY A 208 1 O VAL A 205 N SER A 143 SHEET 4 AD 5 GLY A 115 ASN A 119 -1 O GLY A 115 N GLY A 208 SHEET 5 AD 5 ILE A 225 PHE A 228 -1 O ASP A 226 N VAL A 118 CISPEP 1 ILE A 51 GLY A 52 0 9.52 SITE 1 AC1 9 TRP A 14 TYR A 17 ASN A 42 SER A 62 SITE 2 AC1 9 TYR A 238 ASP A 240 LYS A 305 HOH A2127 SITE 3 AC1 9 HOH A2128 SITE 1 AC2 5 ARG A 96 ARG A 301 GLY A 302 THR A 303 SITE 2 AC2 5 LEU A 304 SITE 1 AC3 1 HIS A 314 SITE 1 AC4 2 THR A 217 MET A 221 CRYST1 51.610 86.270 89.500 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019376 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011592 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011173 0.00000