data_2V8S # _entry.id 2V8S # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2V8S PDBE EBI-33473 WWPDB D_1290033473 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1XGW _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'THE CRYSTAL STRUCTURE OF HUMAN ENTHOPROTIN N -TERMINAL DOMAIN' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2V8S _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2007-08-14 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Owen, D.J.' 1 'McCoy, A.J.' 2 'Collins, B.M.' 3 'Miller, S.E.' 4 # _citation.id primary _citation.title 'A Snare-Adaptor Interaction is a New Mode of Cargo Recognition in Clathrin Coated Vesicles' _citation.journal_abbrev Nature _citation.journal_volume 450 _citation.page_first 570 _citation.page_last ? _citation.year 2007 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18033301 _citation.pdbx_database_id_DOI 10.1038/NATURE06353 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Miller, S.E.' 1 primary 'Collins, B.M.' 2 primary 'Mccoy, A.J.' 3 primary 'Robinson, M.S.' 4 primary 'Owen, D.J.' 5 # _cell.entry_id 2V8S _cell.length_a 102.231 _cell.length_b 60.935 _cell.length_c 40.998 _cell.angle_alpha 90.00 _cell.angle_beta 94.09 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2V8S _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CLATHRIN INTERACTOR 1' 17434.732 1 ? ? 'ENTH, RESIDUES 20-166' ? 2 polymer man 'VESICLE TRANSPORT THROUGH INTERACTION WITH T-SNARES HOMOLOG 1B' 11253.795 1 ? ? 'HABC DOMAIN, RESIDUES 1-96' ? 3 non-polymer syn GLYCEROL 92.094 5 ? ? ? ? 4 water nat water 18.015 75 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'EPSINR, EPSIN-4, EPSIN-RELATED PROTEIN, ENTHOPROTIN, CLATHRIN-INTERACTING PROTEIN LOCALIZED IN THE TRANS-GOLGI REGION, CLINT' 2 'VTI1B, VESICLE TRANSPORT V-SNARE PROTEIN VTI1-LIKE 1, VTI1-RP1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;NYSEIESKVREATNDDPWGPSGQLMGEIAKATFMYEQFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGSERVVT SAREHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQDDDRLREERKKAKKNKDKYVGVSSDS ; ;NYSEIESKVREATNDDPWGPSGQLMGEIAKATFMYEQFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGSERVVT SAREHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQDDDRLREERKKAKKNKDKYVGVSSDS ; E ? 2 'polypeptide(L)' no no ;MASSAASSEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSK LRNYRKDLAKLHREVR ; ;MASSAASSEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSK LRNYRKDLAKLHREVR ; V ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 TYR n 1 3 SER n 1 4 GLU n 1 5 ILE n 1 6 GLU n 1 7 SER n 1 8 LYS n 1 9 VAL n 1 10 ARG n 1 11 GLU n 1 12 ALA n 1 13 THR n 1 14 ASN n 1 15 ASP n 1 16 ASP n 1 17 PRO n 1 18 TRP n 1 19 GLY n 1 20 PRO n 1 21 SER n 1 22 GLY n 1 23 GLN n 1 24 LEU n 1 25 MET n 1 26 GLY n 1 27 GLU n 1 28 ILE n 1 29 ALA n 1 30 LYS n 1 31 ALA n 1 32 THR n 1 33 PHE n 1 34 MET n 1 35 TYR n 1 36 GLU n 1 37 GLN n 1 38 PHE n 1 39 PRO n 1 40 GLU n 1 41 LEU n 1 42 MET n 1 43 ASN n 1 44 MET n 1 45 LEU n 1 46 TRP n 1 47 SER n 1 48 ARG n 1 49 MET n 1 50 LEU n 1 51 LYS n 1 52 ASP n 1 53 ASN n 1 54 LYS n 1 55 LYS n 1 56 ASN n 1 57 TRP n 1 58 ARG n 1 59 ARG n 1 60 VAL n 1 61 TYR n 1 62 LYS n 1 63 SER n 1 64 LEU n 1 65 LEU n 1 66 LEU n 1 67 LEU n 1 68 ALA n 1 69 TYR n 1 70 LEU n 1 71 ILE n 1 72 ARG n 1 73 ASN n 1 74 GLY n 1 75 SER n 1 76 GLU n 1 77 ARG n 1 78 VAL n 1 79 VAL n 1 80 THR n 1 81 SER n 1 82 ALA n 1 83 ARG n 1 84 GLU n 1 85 HIS n 1 86 ILE n 1 87 TYR n 1 88 ASP n 1 89 LEU n 1 90 ARG n 1 91 SER n 1 92 LEU n 1 93 GLU n 1 94 ASN n 1 95 TYR n 1 96 HIS n 1 97 PHE n 1 98 VAL n 1 99 ASP n 1 100 GLU n 1 101 HIS n 1 102 GLY n 1 103 LYS n 1 104 ASP n 1 105 GLN n 1 106 GLY n 1 107 ILE n 1 108 ASN n 1 109 ILE n 1 110 ARG n 1 111 GLN n 1 112 LYS n 1 113 VAL n 1 114 LYS n 1 115 GLU n 1 116 LEU n 1 117 VAL n 1 118 GLU n 1 119 PHE n 1 120 ALA n 1 121 GLN n 1 122 ASP n 1 123 ASP n 1 124 ASP n 1 125 ARG n 1 126 LEU n 1 127 ARG n 1 128 GLU n 1 129 GLU n 1 130 ARG n 1 131 LYS n 1 132 LYS n 1 133 ALA n 1 134 LYS n 1 135 LYS n 1 136 ASN n 1 137 LYS n 1 138 ASP n 1 139 LYS n 1 140 TYR n 1 141 VAL n 1 142 GLY n 1 143 VAL n 1 144 SER n 1 145 SER n 1 146 ASP n 1 147 SER n 2 1 MET n 2 2 ALA n 2 3 SER n 2 4 SER n 2 5 ALA n 2 6 ALA n 2 7 SER n 2 8 SER n 2 9 GLU n 2 10 HIS n 2 11 PHE n 2 12 GLU n 2 13 LYS n 2 14 LEU n 2 15 HIS n 2 16 GLU n 2 17 ILE n 2 18 PHE n 2 19 ARG n 2 20 GLY n 2 21 LEU n 2 22 LEU n 2 23 GLU n 2 24 ASP n 2 25 LEU n 2 26 GLN n 2 27 GLY n 2 28 VAL n 2 29 PRO n 2 30 GLU n 2 31 ARG n 2 32 LEU n 2 33 LEU n 2 34 GLY n 2 35 THR n 2 36 ALA n 2 37 GLY n 2 38 THR n 2 39 GLU n 2 40 GLU n 2 41 LYS n 2 42 LYS n 2 43 LYS n 2 44 LEU n 2 45 VAL n 2 46 ARG n 2 47 ASP n 2 48 PHE n 2 49 ASP n 2 50 GLU n 2 51 LYS n 2 52 GLN n 2 53 GLN n 2 54 GLU n 2 55 ALA n 2 56 ASN n 2 57 GLU n 2 58 THR n 2 59 LEU n 2 60 ALA n 2 61 GLU n 2 62 MET n 2 63 GLU n 2 64 GLU n 2 65 GLU n 2 66 LEU n 2 67 ARG n 2 68 TYR n 2 69 ALA n 2 70 PRO n 2 71 LEU n 2 72 THR n 2 73 PHE n 2 74 ARG n 2 75 ASN n 2 76 PRO n 2 77 MET n 2 78 MET n 2 79 SER n 2 80 LYS n 2 81 LEU n 2 82 ARG n 2 83 ASN n 2 84 TYR n 2 85 ARG n 2 86 LYS n 2 87 ASP n 2 88 LEU n 2 89 ALA n 2 90 LYS n 2 91 LEU n 2 92 HIS n 2 93 ARG n 2 94 GLU n 2 95 VAL n 2 96 ARG n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? HUMAN ? ? ? ? ? ? ? ? 'HOMO SAPIENS' 9606 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 469008 ? ? ? ? ? ? 'BL21 DE3 PLYSS' ? ? ? ? ? ? ? ? ? ? ? PET ? ? 2 1 sample ? ? ? HUMAN ? ? ? ? ? ? ? ? 'HOMO SAPIENS' 9606 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 469008 ? ? ? ? ? ? 'BL21 DE3 PLYSS' ? ? ? ? ? ? ? ? ? ? ? PET ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP EPN4_HUMAN 1 ? ? Q14677 ? 2 UNP VTI1B_HUMAN 2 ? ? Q96J28 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2V8S E 1 ? 147 ? Q14677 20 ? 166 ? 20 166 2 2 2V8S V 1 ? 96 ? Q96J28 1 ? 96 ? 1 96 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 2 2V8S LEU V 22 ? UNP Q96J28 HIS 22 conflict 22 1 2 2V8S VAL V 45 ? UNP Q96J28 ILE 45 conflict 45 2 2 2V8S THR V 72 ? UNP Q96J28 SER 72 conflict 72 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2V8S _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.20 _exptl_crystal.density_percent_sol 43.75 _exptl_crystal.description NONE # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2006-07-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2V8S _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 19.90 _reflns.d_resolution_high 2.20 _reflns.number_obs 11925 _reflns.number_all ? _reflns.percent_possible_obs 97.8 _reflns.pdbx_Rmerge_I_obs 0.07 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 18.70 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.2 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.20 _reflns_shell.d_res_low 2.33 _reflns_shell.percent_possible_all 89.9 _reflns_shell.Rmerge_I_obs 0.36 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.50 _reflns_shell.pdbx_redundancy 5.2 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2V8S _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 11579 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.55 _refine.ls_d_res_high 2.22 _refine.ls_percent_reflns_obs 97.1 _refine.ls_R_factor_obs 0.201 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.196 _refine.ls_R_factor_R_free 0.284 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.900 _refine.ls_number_reflns_R_free 591 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.938 _refine.correlation_coeff_Fo_to_Fc_free 0.897 _refine.B_iso_mean 33.79 _refine.aniso_B[1][1] 0.14000 _refine.aniso_B[2][2] -0.05000 _refine.aniso_B[3][3] -0.08000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.06000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model 'UNCOMPLEXED STRUCTURES' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.353 _refine.pdbx_overall_ESU_R_Free 0.273 _refine.overall_SU_ML 0.184 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 6.973 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1909 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 30 _refine_hist.number_atoms_solvent 75 _refine_hist.number_atoms_total 2014 _refine_hist.d_res_high 2.22 _refine_hist.d_res_low 19.55 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.025 0.021 ? 2021 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.046 1.978 ? 2700 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.250 5.000 ? 240 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 33.486 23.514 ? 111 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 21.248 15.000 ? 409 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 20.240 15.000 ? 24 'X-RAY DIFFRACTION' ? r_chiral_restr 0.154 0.200 ? 275 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.020 ? 1522 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.227 0.200 ? 922 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.298 0.200 ? 1329 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.216 0.200 ? 94 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.262 0.200 ? 65 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.236 0.200 ? 20 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.341 1.500 ? 1234 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.157 2.000 ? 1881 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 3.337 3.000 ? 920 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 4.871 4.500 ? 816 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.22 _refine_ls_shell.d_res_low 2.27 _refine_ls_shell.number_reflns_R_work 767 _refine_ls_shell.R_factor_R_work 0.2270 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.3900 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 51 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2V8S _struct.title 'VTI1B HABC DOMAIN - EPSINR ENTH DOMAIN COMPLEX' _struct.pdbx_descriptor 'CLATHRIN INTERACTOR 1, VESICLE TRANSPORT THROUGH INTERACTION WITH T-SNARES HOMOLOG 1B' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2V8S _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' _struct_keywords.text ;PROTEIN TRANSPORT, CYTOPLASMIC VESICLE, LIPID-BINDING, TRANSMEMBRANE, PHOSPHORYLATION, ALTERNATIVE SPLICING, VTI1B-EPSINR COMPLEX, CYTOPLASM, TRANSPORT, ENDOCYTOSIS, COILED COIL, SNARE, CARGO, ADAPTOR, VESICLE, MEMBRANE, CLATHRIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 3 ? THR A 13 ? SER E 22 THR E 32 1 ? 11 HELX_P HELX_P2 2 SER A 21 ? THR A 32 ? SER E 40 THR E 51 1 ? 12 HELX_P HELX_P3 3 GLN A 37 ? LYS A 51 ? GLN E 56 LYS E 70 1 ? 15 HELX_P HELX_P4 4 ASN A 56 ? GLY A 74 ? ASN E 75 GLY E 93 1 ? 19 HELX_P HELX_P5 5 GLU A 76 ? HIS A 85 ? GLU E 95 HIS E 104 1 ? 10 HELX_P HELX_P6 6 HIS A 85 ? LEU A 92 ? HIS E 104 LEU E 111 1 ? 8 HELX_P HELX_P7 7 GLU A 93 ? TYR A 95 ? GLU E 112 TYR E 114 5 ? 3 HELX_P HELX_P8 8 GLN A 105 ? GLN A 121 ? GLN E 124 GLN E 140 1 ? 17 HELX_P HELX_P9 9 ASP A 122 ? LYS A 139 ? ASP E 141 LYS E 158 1 ? 18 HELX_P HELX_P10 10 SER B 8 ? GLY B 27 ? SER V 8 GLY V 27 1 ? 20 HELX_P HELX_P11 11 THR B 38 ? ARG B 67 ? THR V 38 ARG V 67 1 ? 30 HELX_P HELX_P12 12 PRO B 70 ? GLU B 94 ? PRO V 70 GLU V 94 1 ? 25 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE GOL E1159' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE GOL E1160' AC3 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE GOL E1161' AC4 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE GOL V1095' AC5 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE GOL V1096' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 SER A 81 ? SER E 100 . ? 1_555 ? 2 AC1 4 GLU A 84 ? GLU E 103 . ? 1_555 ? 3 AC1 4 HIS A 85 ? HIS E 104 . ? 1_555 ? 4 AC1 4 HOH H . ? HOH E 2057 . ? 1_555 ? 5 AC2 6 ASN A 14 ? ASN E 33 . ? 1_555 ? 6 AC2 6 ASP A 15 ? ASP E 34 . ? 1_555 ? 7 AC2 6 ARG A 48 ? ARG E 67 . ? 1_555 ? 8 AC2 6 LYS A 114 ? LYS E 133 . ? 1_555 ? 9 AC2 6 HOH H . ? HOH E 2058 . ? 1_555 ? 10 AC2 6 HOH H . ? HOH E 2059 . ? 1_555 ? 11 AC3 5 LYS A 103 ? LYS E 122 . ? 1_555 ? 12 AC3 5 THR B 72 ? THR V 72 . ? 1_555 ? 13 AC3 5 PHE B 73 ? PHE V 73 . ? 1_555 ? 14 AC3 5 PRO B 76 ? PRO V 76 . ? 1_555 ? 15 AC3 5 MET B 77 ? MET V 77 . ? 1_555 ? 16 AC4 3 SER B 4 ? SER V 4 . ? 1_555 ? 17 AC4 3 GLU B 65 ? GLU V 65 . ? 1_555 ? 18 AC4 3 TYR B 68 ? TYR V 68 . ? 1_555 ? 19 AC5 3 GLY A 22 ? GLY E 41 . ? 1_555 ? 20 AC5 3 GLN A 23 ? GLN E 42 . ? 1_555 ? 21 AC5 3 ARG B 67 ? ARG V 67 . ? 1_555 ? # _database_PDB_matrix.entry_id 2V8S _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2V8S _atom_sites.fract_transf_matrix[1][1] 0.009782 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000699 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016411 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024454 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 20 ? ? ? E . n A 1 2 TYR 2 21 ? ? ? E . n A 1 3 SER 3 22 22 SER SER E . n A 1 4 GLU 4 23 23 GLU GLU E . n A 1 5 ILE 5 24 24 ILE ILE E . n A 1 6 GLU 6 25 25 GLU GLU E . n A 1 7 SER 7 26 26 SER SER E . n A 1 8 LYS 8 27 27 LYS LYS E . n A 1 9 VAL 9 28 28 VAL VAL E . n A 1 10 ARG 10 29 29 ARG ARG E . n A 1 11 GLU 11 30 30 GLU GLU E . n A 1 12 ALA 12 31 31 ALA ALA E . n A 1 13 THR 13 32 32 THR THR E . n A 1 14 ASN 14 33 33 ASN ASN E . n A 1 15 ASP 15 34 34 ASP ASP E . n A 1 16 ASP 16 35 35 ASP ASP E . n A 1 17 PRO 17 36 36 PRO PRO E . n A 1 18 TRP 18 37 37 TRP TRP E . n A 1 19 GLY 19 38 38 GLY GLY E . n A 1 20 PRO 20 39 39 PRO PRO E . n A 1 21 SER 21 40 40 SER SER E . n A 1 22 GLY 22 41 41 GLY GLY E . n A 1 23 GLN 23 42 42 GLN GLN E . n A 1 24 LEU 24 43 43 LEU LEU E . n A 1 25 MET 25 44 44 MET MET E . n A 1 26 GLY 26 45 45 GLY GLY E . n A 1 27 GLU 27 46 46 GLU GLU E . n A 1 28 ILE 28 47 47 ILE ILE E . n A 1 29 ALA 29 48 48 ALA ALA E . n A 1 30 LYS 30 49 49 LYS LYS E . n A 1 31 ALA 31 50 50 ALA ALA E . n A 1 32 THR 32 51 51 THR THR E . n A 1 33 PHE 33 52 52 PHE PHE E . n A 1 34 MET 34 53 53 MET MET E . n A 1 35 TYR 35 54 54 TYR TYR E . n A 1 36 GLU 36 55 55 GLU GLU E . n A 1 37 GLN 37 56 56 GLN GLN E . n A 1 38 PHE 38 57 57 PHE PHE E . n A 1 39 PRO 39 58 58 PRO PRO E . n A 1 40 GLU 40 59 59 GLU GLU E . n A 1 41 LEU 41 60 60 LEU LEU E . n A 1 42 MET 42 61 61 MET MET E . n A 1 43 ASN 43 62 62 ASN ASN E . n A 1 44 MET 44 63 63 MET MET E . n A 1 45 LEU 45 64 64 LEU LEU E . n A 1 46 TRP 46 65 65 TRP TRP E . n A 1 47 SER 47 66 66 SER SER E . n A 1 48 ARG 48 67 67 ARG ARG E . n A 1 49 MET 49 68 68 MET MET E . n A 1 50 LEU 50 69 69 LEU LEU E . n A 1 51 LYS 51 70 70 LYS LYS E . n A 1 52 ASP 52 71 71 ASP ASP E . n A 1 53 ASN 53 72 72 ASN ASN E . n A 1 54 LYS 54 73 73 LYS LYS E . n A 1 55 LYS 55 74 74 LYS LYS E . n A 1 56 ASN 56 75 75 ASN ASN E . n A 1 57 TRP 57 76 76 TRP TRP E . n A 1 58 ARG 58 77 77 ARG ARG E . n A 1 59 ARG 59 78 78 ARG ARG E . n A 1 60 VAL 60 79 79 VAL VAL E . n A 1 61 TYR 61 80 80 TYR TYR E . n A 1 62 LYS 62 81 81 LYS LYS E . n A 1 63 SER 63 82 82 SER SER E . n A 1 64 LEU 64 83 83 LEU LEU E . n A 1 65 LEU 65 84 84 LEU LEU E . n A 1 66 LEU 66 85 85 LEU LEU E . n A 1 67 LEU 67 86 86 LEU LEU E . n A 1 68 ALA 68 87 87 ALA ALA E . n A 1 69 TYR 69 88 88 TYR TYR E . n A 1 70 LEU 70 89 89 LEU LEU E . n A 1 71 ILE 71 90 90 ILE ILE E . n A 1 72 ARG 72 91 91 ARG ARG E . n A 1 73 ASN 73 92 92 ASN ASN E . n A 1 74 GLY 74 93 93 GLY GLY E . n A 1 75 SER 75 94 94 SER SER E . n A 1 76 GLU 76 95 95 GLU GLU E . n A 1 77 ARG 77 96 96 ARG ARG E . n A 1 78 VAL 78 97 97 VAL VAL E . n A 1 79 VAL 79 98 98 VAL VAL E . n A 1 80 THR 80 99 99 THR THR E . n A 1 81 SER 81 100 100 SER SER E . n A 1 82 ALA 82 101 101 ALA ALA E . n A 1 83 ARG 83 102 102 ARG ARG E . n A 1 84 GLU 84 103 103 GLU GLU E . n A 1 85 HIS 85 104 104 HIS HIS E . n A 1 86 ILE 86 105 105 ILE ILE E . n A 1 87 TYR 87 106 106 TYR TYR E . n A 1 88 ASP 88 107 107 ASP ASP E . n A 1 89 LEU 89 108 108 LEU LEU E . n A 1 90 ARG 90 109 109 ARG ARG E . n A 1 91 SER 91 110 110 SER SER E . n A 1 92 LEU 92 111 111 LEU LEU E . n A 1 93 GLU 93 112 112 GLU GLU E . n A 1 94 ASN 94 113 113 ASN ASN E . n A 1 95 TYR 95 114 114 TYR TYR E . n A 1 96 HIS 96 115 115 HIS HIS E . n A 1 97 PHE 97 116 116 PHE PHE E . n A 1 98 VAL 98 117 117 VAL VAL E . n A 1 99 ASP 99 118 118 ASP ASP E . n A 1 100 GLU 100 119 119 GLU GLU E . n A 1 101 HIS 101 120 120 HIS HIS E . n A 1 102 GLY 102 121 121 GLY GLY E . n A 1 103 LYS 103 122 122 LYS LYS E . n A 1 104 ASP 104 123 123 ASP ASP E . n A 1 105 GLN 105 124 124 GLN GLN E . n A 1 106 GLY 106 125 125 GLY GLY E . n A 1 107 ILE 107 126 126 ILE ILE E . n A 1 108 ASN 108 127 127 ASN ASN E . n A 1 109 ILE 109 128 128 ILE ILE E . n A 1 110 ARG 110 129 129 ARG ARG E . n A 1 111 GLN 111 130 130 GLN GLN E . n A 1 112 LYS 112 131 131 LYS LYS E . n A 1 113 VAL 113 132 132 VAL VAL E . n A 1 114 LYS 114 133 133 LYS LYS E . n A 1 115 GLU 115 134 134 GLU GLU E . n A 1 116 LEU 116 135 135 LEU LEU E . n A 1 117 VAL 117 136 136 VAL VAL E . n A 1 118 GLU 118 137 137 GLU GLU E . n A 1 119 PHE 119 138 138 PHE PHE E . n A 1 120 ALA 120 139 139 ALA ALA E . n A 1 121 GLN 121 140 140 GLN GLN E . n A 1 122 ASP 122 141 141 ASP ASP E . n A 1 123 ASP 123 142 142 ASP ASP E . n A 1 124 ASP 124 143 143 ASP ASP E . n A 1 125 ARG 125 144 144 ARG ARG E . n A 1 126 LEU 126 145 145 LEU LEU E . n A 1 127 ARG 127 146 146 ARG ARG E . n A 1 128 GLU 128 147 147 GLU GLU E . n A 1 129 GLU 129 148 148 GLU GLU E . n A 1 130 ARG 130 149 149 ARG ARG E . n A 1 131 LYS 131 150 150 LYS LYS E . n A 1 132 LYS 132 151 151 LYS LYS E . n A 1 133 ALA 133 152 152 ALA ALA E . n A 1 134 LYS 134 153 153 LYS LYS E . n A 1 135 LYS 135 154 154 LYS LYS E . n A 1 136 ASN 136 155 155 ASN ASN E . n A 1 137 LYS 137 156 156 LYS LYS E . n A 1 138 ASP 138 157 157 ASP ASP E . n A 1 139 LYS 139 158 158 LYS LYS E . n A 1 140 TYR 140 159 ? ? ? E . n A 1 141 VAL 141 160 ? ? ? E . n A 1 142 GLY 142 161 ? ? ? E . n A 1 143 VAL 143 162 ? ? ? E . n A 1 144 SER 144 163 ? ? ? E . n A 1 145 SER 145 164 ? ? ? E . n A 1 146 ASP 146 165 ? ? ? E . n A 1 147 SER 147 166 ? ? ? E . n B 2 1 MET 1 1 ? ? ? V . n B 2 2 ALA 2 2 2 ALA ALA V . n B 2 3 SER 3 3 3 SER SER V . n B 2 4 SER 4 4 4 SER SER V . n B 2 5 ALA 5 5 5 ALA ALA V . n B 2 6 ALA 6 6 6 ALA ALA V . n B 2 7 SER 7 7 7 SER SER V . n B 2 8 SER 8 8 8 SER SER V . n B 2 9 GLU 9 9 9 GLU GLU V . n B 2 10 HIS 10 10 10 HIS HIS V . n B 2 11 PHE 11 11 11 PHE PHE V . n B 2 12 GLU 12 12 12 GLU GLU V . n B 2 13 LYS 13 13 13 LYS LYS V . n B 2 14 LEU 14 14 14 LEU LEU V . n B 2 15 HIS 15 15 15 HIS HIS V . n B 2 16 GLU 16 16 16 GLU GLU V . n B 2 17 ILE 17 17 17 ILE ILE V . n B 2 18 PHE 18 18 18 PHE PHE V . n B 2 19 ARG 19 19 19 ARG ARG V . n B 2 20 GLY 20 20 20 GLY GLY V . n B 2 21 LEU 21 21 21 LEU LEU V . n B 2 22 LEU 22 22 22 LEU LEU V . n B 2 23 GLU 23 23 23 GLU GLU V . n B 2 24 ASP 24 24 24 ASP ASP V . n B 2 25 LEU 25 25 25 LEU LEU V . n B 2 26 GLN 26 26 26 GLN GLN V . n B 2 27 GLY 27 27 27 GLY GLY V . n B 2 28 VAL 28 28 28 VAL VAL V . n B 2 29 PRO 29 29 29 PRO PRO V . n B 2 30 GLU 30 30 30 GLU GLU V . n B 2 31 ARG 31 31 31 ARG ARG V . n B 2 32 LEU 32 32 32 LEU LEU V . n B 2 33 LEU 33 33 33 LEU LEU V . n B 2 34 GLY 34 34 34 GLY GLY V . n B 2 35 THR 35 35 35 THR THR V . n B 2 36 ALA 36 36 36 ALA ALA V . n B 2 37 GLY 37 37 37 GLY GLY V . n B 2 38 THR 38 38 38 THR THR V . n B 2 39 GLU 39 39 39 GLU GLU V . n B 2 40 GLU 40 40 40 GLU GLU V . n B 2 41 LYS 41 41 41 LYS LYS V . n B 2 42 LYS 42 42 42 LYS LYS V . n B 2 43 LYS 43 43 43 LYS LYS V . n B 2 44 LEU 44 44 44 LEU LEU V . n B 2 45 VAL 45 45 45 VAL VAL V . n B 2 46 ARG 46 46 46 ARG ARG V . n B 2 47 ASP 47 47 47 ASP ASP V . n B 2 48 PHE 48 48 48 PHE PHE V . n B 2 49 ASP 49 49 49 ASP ASP V . n B 2 50 GLU 50 50 50 GLU GLU V . n B 2 51 LYS 51 51 51 LYS LYS V . n B 2 52 GLN 52 52 52 GLN GLN V . n B 2 53 GLN 53 53 53 GLN GLN V . n B 2 54 GLU 54 54 54 GLU GLU V . n B 2 55 ALA 55 55 55 ALA ALA V . n B 2 56 ASN 56 56 56 ASN ASN V . n B 2 57 GLU 57 57 57 GLU GLU V . n B 2 58 THR 58 58 58 THR THR V . n B 2 59 LEU 59 59 59 LEU LEU V . n B 2 60 ALA 60 60 60 ALA ALA V . n B 2 61 GLU 61 61 61 GLU GLU V . n B 2 62 MET 62 62 62 MET MET V . n B 2 63 GLU 63 63 63 GLU GLU V . n B 2 64 GLU 64 64 64 GLU GLU V . n B 2 65 GLU 65 65 65 GLU GLU V . n B 2 66 LEU 66 66 66 LEU LEU V . n B 2 67 ARG 67 67 67 ARG ARG V . n B 2 68 TYR 68 68 68 TYR TYR V . n B 2 69 ALA 69 69 69 ALA ALA V . n B 2 70 PRO 70 70 70 PRO PRO V . n B 2 71 LEU 71 71 71 LEU LEU V . n B 2 72 THR 72 72 72 THR THR V . n B 2 73 PHE 73 73 73 PHE PHE V . n B 2 74 ARG 74 74 74 ARG ARG V . n B 2 75 ASN 75 75 75 ASN ASN V . n B 2 76 PRO 76 76 76 PRO PRO V . n B 2 77 MET 77 77 77 MET MET V . n B 2 78 MET 78 78 78 MET MET V . n B 2 79 SER 79 79 79 SER SER V . n B 2 80 LYS 80 80 80 LYS LYS V . n B 2 81 LEU 81 81 81 LEU LEU V . n B 2 82 ARG 82 82 82 ARG ARG V . n B 2 83 ASN 83 83 83 ASN ASN V . n B 2 84 TYR 84 84 84 TYR TYR V . n B 2 85 ARG 85 85 85 ARG ARG V . n B 2 86 LYS 86 86 86 LYS LYS V . n B 2 87 ASP 87 87 87 ASP ASP V . n B 2 88 LEU 88 88 88 LEU LEU V . n B 2 89 ALA 89 89 89 ALA ALA V . n B 2 90 LYS 90 90 90 LYS LYS V . n B 2 91 LEU 91 91 91 LEU LEU V . n B 2 92 HIS 92 92 92 HIS HIS V . n B 2 93 ARG 93 93 93 ARG ARG V . n B 2 94 GLU 94 94 94 GLU GLU V . n B 2 95 VAL 95 95 ? ? ? V . n B 2 96 ARG 96 96 ? ? ? V . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL 1 1159 1159 GOL GOL E . D 3 GOL 1 1160 1160 GOL GOL E . E 3 GOL 1 1161 1161 GOL GOL E . F 3 GOL 1 1095 1095 GOL GOL V . G 3 GOL 1 1096 1096 GOL GOL V . H 4 HOH 1 2001 2001 HOH HOH E . H 4 HOH 2 2002 2002 HOH HOH E . H 4 HOH 3 2003 2003 HOH HOH E . H 4 HOH 4 2004 2004 HOH HOH E . H 4 HOH 5 2005 2005 HOH HOH E . H 4 HOH 6 2006 2006 HOH HOH E . H 4 HOH 7 2007 2007 HOH HOH E . H 4 HOH 8 2008 2008 HOH HOH E . H 4 HOH 9 2009 2009 HOH HOH E . H 4 HOH 10 2010 2010 HOH HOH E . H 4 HOH 11 2011 2011 HOH HOH E . H 4 HOH 12 2012 2012 HOH HOH E . H 4 HOH 13 2013 2013 HOH HOH E . H 4 HOH 14 2014 2014 HOH HOH E . H 4 HOH 15 2015 2015 HOH HOH E . H 4 HOH 16 2016 2016 HOH HOH E . H 4 HOH 17 2017 2017 HOH HOH E . H 4 HOH 18 2018 2018 HOH HOH E . H 4 HOH 19 2019 2019 HOH HOH E . H 4 HOH 20 2020 2020 HOH HOH E . H 4 HOH 21 2021 2021 HOH HOH E . H 4 HOH 22 2022 2022 HOH HOH E . H 4 HOH 23 2023 2023 HOH HOH E . H 4 HOH 24 2024 2024 HOH HOH E . H 4 HOH 25 2025 2025 HOH HOH E . H 4 HOH 26 2026 2026 HOH HOH E . H 4 HOH 27 2027 2027 HOH HOH E . H 4 HOH 28 2028 2028 HOH HOH E . H 4 HOH 29 2029 2029 HOH HOH E . H 4 HOH 30 2030 2030 HOH HOH E . H 4 HOH 31 2031 2031 HOH HOH E . H 4 HOH 32 2032 2032 HOH HOH E . H 4 HOH 33 2033 2033 HOH HOH E . H 4 HOH 34 2034 2034 HOH HOH E . H 4 HOH 35 2035 2035 HOH HOH E . H 4 HOH 36 2036 2036 HOH HOH E . H 4 HOH 37 2037 2037 HOH HOH E . H 4 HOH 38 2038 2038 HOH HOH E . H 4 HOH 39 2039 2039 HOH HOH E . H 4 HOH 40 2040 2040 HOH HOH E . H 4 HOH 41 2041 2041 HOH HOH E . H 4 HOH 42 2042 2042 HOH HOH E . H 4 HOH 43 2043 2043 HOH HOH E . H 4 HOH 44 2044 2044 HOH HOH E . H 4 HOH 45 2045 2045 HOH HOH E . H 4 HOH 46 2046 2046 HOH HOH E . H 4 HOH 47 2047 2047 HOH HOH E . H 4 HOH 48 2048 2048 HOH HOH E . H 4 HOH 49 2049 2049 HOH HOH E . H 4 HOH 50 2050 2050 HOH HOH E . H 4 HOH 51 2051 2051 HOH HOH E . H 4 HOH 52 2052 2052 HOH HOH E . H 4 HOH 53 2053 2053 HOH HOH E . H 4 HOH 54 2054 2054 HOH HOH E . H 4 HOH 55 2055 2055 HOH HOH E . H 4 HOH 56 2056 2056 HOH HOH E . H 4 HOH 57 2057 2057 HOH HOH E . H 4 HOH 58 2058 2058 HOH HOH E . H 4 HOH 59 2059 2059 HOH HOH E . I 4 HOH 1 2001 2001 HOH HOH V . I 4 HOH 2 2002 2002 HOH HOH V . I 4 HOH 3 2003 2003 HOH HOH V . I 4 HOH 4 2004 2004 HOH HOH V . I 4 HOH 5 2005 2005 HOH HOH V . I 4 HOH 6 2006 2006 HOH HOH V . I 4 HOH 7 2007 2007 HOH HOH V . I 4 HOH 8 2008 2008 HOH HOH V . I 4 HOH 9 2009 2009 HOH HOH V . I 4 HOH 10 2010 2010 HOH HOH V . I 4 HOH 11 2011 2011 HOH HOH V . I 4 HOH 12 2012 2012 HOH HOH V . I 4 HOH 13 2013 2013 HOH HOH V . I 4 HOH 14 2014 2014 HOH HOH V . I 4 HOH 15 2015 2015 HOH HOH V . I 4 HOH 16 2016 2016 HOH HOH V . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1580 ? 1 MORE -1.9 ? 1 'SSA (A^2)' 16650 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-11-27 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 PHASER phasing . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OG V SER 4 ? ? OE1 V GLU 65 ? ? 2.13 2 1 O1 E GOL 1159 ? ? O E HOH 2057 ? ? 2.16 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CG _pdbx_validate_rmsd_bond.auth_asym_id_1 V _pdbx_validate_rmsd_bond.auth_comp_id_1 GLU _pdbx_validate_rmsd_bond.auth_seq_id_1 57 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CD _pdbx_validate_rmsd_bond.auth_asym_id_2 V _pdbx_validate_rmsd_bond.auth_comp_id_2 GLU _pdbx_validate_rmsd_bond.auth_seq_id_2 57 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.620 _pdbx_validate_rmsd_bond.bond_target_value 1.515 _pdbx_validate_rmsd_bond.bond_deviation 0.105 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.015 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB E ASP 35 ? ? CG E ASP 35 ? ? OD1 E ASP 35 ? ? 127.89 118.30 9.59 0.90 N 2 1 CB E ASP 35 ? ? CG E ASP 35 ? ? OD2 E ASP 35 ? ? 112.29 118.30 -6.01 0.90 N 3 1 CB E ASP 118 ? ? CG E ASP 118 ? ? OD1 E ASP 118 ? ? 110.52 118.30 -7.78 0.90 N 4 1 NE E ARG 144 ? ? CZ E ARG 144 ? ? NH2 E ARG 144 ? ? 117.08 120.30 -3.22 0.50 N 5 1 NE V ARG 19 ? ? CZ V ARG 19 ? ? NH1 V ARG 19 ? ? 124.09 120.30 3.79 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU E 95 ? ? -37.88 -35.43 2 1 GLU E 112 ? ? -59.00 -9.19 3 1 THR V 38 ? ? -154.48 -12.95 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 E ASN 20 ? A ASN 1 2 1 Y 1 E TYR 21 ? A TYR 2 3 1 Y 1 E TYR 159 ? A TYR 140 4 1 Y 1 E VAL 160 ? A VAL 141 5 1 Y 1 E GLY 161 ? A GLY 142 6 1 Y 1 E VAL 162 ? A VAL 143 7 1 Y 1 E SER 163 ? A SER 144 8 1 Y 1 E SER 164 ? A SER 145 9 1 Y 1 E ASP 165 ? A ASP 146 10 1 Y 1 E SER 166 ? A SER 147 11 1 Y 1 V MET 1 ? B MET 1 12 1 Y 1 V VAL 95 ? B VAL 95 13 1 Y 1 V ARG 96 ? B ARG 96 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 GLYCEROL GOL 4 water HOH #