HEADER LYASE 23-AUG-07 2V9F TITLE L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT E192A- TITLE 2 K248W-A273S) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHAMNULOSE-1-PHOSPHATE ALDOLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.1.2.19; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: JM105; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PKK223-3 KEYWDS ENTROPY INDEX, METAL-BINDING, OLIGOMERIZATION, ZINC, LYASE, ALDOLASE, KEYWDS 2 CLASS II, CYTOPLASM, CLEAVAGE OF L-RHAMNULOSE-1-PHOSPHATE TO KEYWDS 3 DIHYDROXYACETONEPH BACTERIAL L-RHAMNOSE METABOLISM, INTERFACE KEYWDS 4 DESIGN, SURFACE MUTATION, 2-KETOSE DEGRADATION, PROTEIN-PROTEIN KEYWDS 5 INTERFACE, RARE SUGAR, AGGREGATION, ZINC ENZYME, FIBRILLATION, KEYWDS 6 RHAMNOSE METABOLISM, PROTEIN ENGINEERING EXPDTA X-RAY DIFFRACTION AUTHOR D.GRUENINGER,G.E.SCHULZ REVDAT 4 13-DEC-23 2V9F 1 LINK REVDAT 3 24-FEB-09 2V9F 1 VERSN REVDAT 2 22-JAN-08 2V9F 1 JRNL REVDAT 1 15-JAN-08 2V9F 0 JRNL AUTH D.GRUENINGER,N.TREIBER,M.O.P.ZIEGLER,J.W.A.KOETTER, JRNL AUTH 2 M.-S.SCHULZE,G.E.SCHULZ JRNL TITL DESIGNED PROTEIN-PROTEIN ASSOCIATION. JRNL REF SCIENCE V. 319 206 2008 JRNL REFN ISSN 0036-8075 JRNL PMID 18187656 JRNL DOI 10.1126/SCIENCE.1150421 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.KROEMER,I.MERKEL,G.E.SCHULZ REMARK 1 TITL STRUCTURE AND CATALYTIC MECHANISM OF REMARK 1 TITL 2 L-RHAMNULOSE-1-PHOSPHATE ALDOLASE REMARK 1 REF BIOCHEMISTRY V. 42 10560 2003 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 12962479 REMARK 1 DOI 10.1021/BI0349266 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3133262.460 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.6 REMARK 3 NUMBER OF REFLECTIONS : 17559 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1230 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 49.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1475 REMARK 3 BIN R VALUE (WORKING SET) : 0.1940 REMARK 3 BIN FREE R VALUE : 0.2160 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 111 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2126 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 127 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.97000 REMARK 3 B22 (A**2) : 0.97000 REMARK 3 B33 (A**2) : -1.94000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.09 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.20 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.930 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 67.73 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : AC.PARAM REMARK 3 PARAMETER FILE 4 : WATER.PARAM REMARK 3 PARAMETER FILE 5 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : A REMARK 3 TOPOLOGY FILE 3 : AC.TOP REMARK 3 TOPOLOGY FILE 4 : A REMARK 3 TOPOLOGY FILE 5 : A REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2V9F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1290033558. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17559 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 49.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1OJR REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% (V/V) PEG 400, 0.1 M HEPES (PH REMARK 280 7.5), 0.2 M CALCIUM ACETATE, PH 7.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.41600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.41600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 38.53500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.41600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.41600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 38.53500 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 46.41600 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 46.41600 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 38.53500 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 46.41600 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 46.41600 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 38.53500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 12600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 -92.83200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -92.83200 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 -92.83200 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 -92.83200 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2105 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 192 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LYS 248 TO TRP REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ALA 273 TO SER REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2079 O HOH A 2081 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2012 O HOH A 2072 4545 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 2 -122.99 -95.10 REMARK 500 ARG A 28 -123.32 49.34 REMARK 500 ASP A 85 81.54 -155.30 REMARK 500 HIS A 212 -64.40 -140.55 REMARK 500 LEU A 272 49.70 -94.69 REMARK 500 SER A 273 -160.37 -71.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2036 DISTANCE = 5.92 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1280 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 27 OE1 REMARK 620 2 HIS A 143 ND1 111.2 REMARK 620 3 GLU A 171 OE2 115.0 118.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1281 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 46 NE2 REMARK 620 2 HIS A 204 NE2 114.9 REMARK 620 3 ACT A1276 O 112.8 110.3 REMARK 620 4 HOH A2127 O 100.4 113.5 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1279 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 141 NE2 REMARK 620 2 HIS A 143 NE2 98.1 REMARK 620 3 HIS A 212 NE2 106.6 108.6 REMARK 620 4 ACT A1275 O 147.1 99.3 94.0 REMARK 620 5 ACT A1275 OXT 91.3 111.6 132.8 56.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1275 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1276 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1277 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1278 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1279 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1280 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1281 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GT7 RELATED DB: PDB REMARK 900 L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI REMARK 900 RELATED ID: 1OJR RELATED DB: PDB REMARK 900 L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT REMARK 900 E192A) REMARK 900 RELATED ID: 2UYU RELATED DB: PDB REMARK 900 L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT REMARK 900 A88F-E192A) REMARK 900 RELATED ID: 2V2B RELATED DB: PDB REMARK 900 L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT REMARK 900 E117S-E192A-K248G- R253A-E254A) REMARK 900 RELATED ID: 2UYV RELATED DB: PDB REMARK 900 L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT Q6Y- REMARK 900 E192A) REMARK 900 RELATED ID: 2V29 RELATED DB: PDB REMARK 900 L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT REMARK 900 K15W) REMARK 900 RELATED ID: 2V2A RELATED DB: PDB REMARK 900 L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT REMARK 900 E192A-K248G-R253A- E254A) REMARK 900 RELATED ID: 2V9E RELATED DB: PDB REMARK 900 L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT REMARK 900 E192A-K248W-A273S) REMARK 900 RELATED ID: 2V9G RELATED DB: PDB REMARK 900 L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT Q6Y- REMARK 900 L84W-E192A) REMARK 900 RELATED ID: 2V9I RELATED DB: PDB REMARK 900 L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT REMARK 900 E192A-K248W-L274STOP ) REMARK 900 RELATED ID: 2V9L RELATED DB: PDB REMARK 900 L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT Q6Y- REMARK 900 E192A) REMARK 900 RELATED ID: 2V9M RELATED DB: PDB REMARK 900 L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT REMARK 900 A87M-T109F-E192A) REMARK 999 REMARK 999 SEQUENCE REMARK 999 RHAD_ECOLI DBREF 2V9F A 1 274 UNP P32169 RHAD_ECOLI 1 274 SEQADV 2V9F ALA A 192 UNP P32169 GLU 192 ENGINEERED MUTATION SEQADV 2V9F TRP A 248 UNP P32169 LYS 248 ENGINEERED MUTATION SEQADV 2V9F SER A 273 UNP P32169 ALA 273 ENGINEERED MUTATION SEQRES 1 A 274 MET GLN ASN ILE THR GLN SER TRP PHE VAL GLN GLY MET SEQRES 2 A 274 ILE LYS ALA THR THR ASP ALA TRP LEU LYS GLY TRP ASP SEQRES 3 A 274 GLU ARG ASN GLY GLY ASN LEU THR LEU ARG LEU ASP ASP SEQRES 4 A 274 ALA ASP ILE ALA PRO TYR HIS ASP ASN PHE HIS GLN GLN SEQRES 5 A 274 PRO ARG TYR ILE PRO LEU SER GLN PRO MET PRO LEU LEU SEQRES 6 A 274 ALA ASN THR PRO PHE ILE VAL THR GLY SER GLY LYS PHE SEQRES 7 A 274 PHE ARG ASN VAL GLN LEU ASP PRO ALA ALA ASN LEU GLY SEQRES 8 A 274 ILE VAL LYS VAL ASP SER ASP GLY ALA GLY TYR HIS ILE SEQRES 9 A 274 LEU TRP GLY LEU THR ASN GLU ALA VAL PRO THR SER GLU SEQRES 10 A 274 LEU PRO ALA HIS PHE LEU SER HIS CYS GLU ARG ILE LYS SEQRES 11 A 274 ALA THR ASN GLY LYS ASP ARG VAL ILE MET HIS CYS HIS SEQRES 12 A 274 ALA THR ASN LEU ILE ALA LEU THR TYR VAL LEU GLU ASN SEQRES 13 A 274 ASP THR ALA VAL PHE THR ARG GLN LEU TRP GLU GLY SER SEQRES 14 A 274 THR GLU CYS LEU VAL VAL PHE PRO ASP GLY VAL GLY ILE SEQRES 15 A 274 LEU PRO TRP MET VAL PRO GLY THR ASP ALA ILE GLY GLN SEQRES 16 A 274 ALA THR ALA GLN GLU MET GLN LYS HIS SER LEU VAL LEU SEQRES 17 A 274 TRP PRO PHE HIS GLY VAL PHE GLY SER GLY PRO THR LEU SEQRES 18 A 274 ASP GLU THR PHE GLY LEU ILE ASP THR ALA GLU LYS SER SEQRES 19 A 274 ALA GLN VAL LEU VAL LYS VAL TYR SER MET GLY GLY MET SEQRES 20 A 274 TRP GLN THR ILE SER ARG GLU GLU LEU ILE ALA LEU GLY SEQRES 21 A 274 LYS ARG PHE GLY VAL THR PRO LEU ALA SER ALA LEU SER SEQRES 22 A 274 LEU HET ACT A1275 4 HET ACT A1276 4 HET ACT A1277 4 HET ACT A1278 4 HET ZN A1279 1 HET ZN A1280 1 HET ZN A1281 1 HETNAM ACT ACETATE ION HETNAM ZN ZINC ION FORMUL 2 ACT 4(C2 H3 O2 1-) FORMUL 6 ZN 3(ZN 2+) FORMUL 9 HOH *127(H2 O) HELIX 1 1 ASN A 3 GLN A 6 5 4 HELIX 2 2 SER A 7 GLY A 24 1 18 HELIX 3 3 ASP A 38 ALA A 43 1 6 HELIX 4 4 PRO A 44 PHE A 49 5 6 HELIX 5 5 MET A 62 ALA A 66 5 5 HELIX 6 6 PHE A 78 VAL A 82 5 5 HELIX 7 7 ASP A 85 ASN A 89 1 5 HELIX 8 8 GLU A 117 ASN A 133 1 17 HELIX 9 9 ALA A 144 LEU A 154 1 11 HELIX 10 10 ASP A 157 GLY A 168 1 12 HELIX 11 11 GLU A 171 PHE A 176 1 6 HELIX 12 12 THR A 190 GLN A 202 1 13 HELIX 13 13 THR A 220 MET A 244 1 25 HELIX 14 14 SER A 252 PHE A 263 1 12 HELIX 15 15 LEU A 268 LEU A 272 5 5 SHEET 1 AA 9 ARG A 54 PRO A 57 0 SHEET 2 AA 9 GLY A 101 GLY A 107 -1 O TYR A 102 N ILE A 56 SHEET 3 AA 9 LEU A 90 VAL A 95 -1 O ILE A 92 N LEU A 105 SHEET 4 AA 9 PRO A 69 THR A 73 -1 O PHE A 70 N VAL A 93 SHEET 5 AA 9 ASN A 32 ARG A 36 -1 O LEU A 33 N THR A 73 SHEET 6 AA 9 VAL A 138 CYS A 142 -1 O ILE A 139 N THR A 34 SHEET 7 AA 9 GLY A 213 GLY A 218 -1 O VAL A 214 N CYS A 142 SHEET 8 AA 9 LEU A 206 TRP A 209 -1 O VAL A 207 N PHE A 215 SHEET 9 AA 9 VAL A 180 ILE A 182 1 O GLY A 181 N LEU A 208 LINK OE1 GLU A 27 ZN ZN A1280 1555 1555 1.96 LINK NE2 HIS A 46 ZN ZN A1281 1555 1555 2.09 LINK NE2 HIS A 141 ZN ZN A1279 1555 1555 2.17 LINK NE2 HIS A 143 ZN ZN A1279 1555 1555 2.09 LINK ND1 HIS A 143 ZN ZN A1280 1555 1555 2.09 LINK OE2 GLU A 171 ZN ZN A1280 4545 1555 2.11 LINK NE2 HIS A 204 ZN ZN A1281 6335 1555 2.22 LINK NE2 HIS A 212 ZN ZN A1279 1555 1555 2.20 LINK O ACT A1275 ZN ZN A1279 1555 1555 2.30 LINK OXT ACT A1275 ZN ZN A1279 1555 1555 2.37 LINK O ACT A1276 ZN ZN A1281 1555 1555 2.01 LINK ZN ZN A1281 O HOH A2127 1555 1555 2.04 SITE 1 AC1 7 ASN A 29 GLY A 31 ASN A 32 HIS A 141 SITE 2 AC1 7 HIS A 143 HIS A 212 ZN A1279 SITE 1 AC2 5 HIS A 46 HIS A 204 SER A 270 ZN A1281 SITE 2 AC2 5 HOH A2123 SITE 1 AC3 6 ALA A 131 ASP A 178 GLN A 202 LYS A 203 SITE 2 AC3 6 HOH A2124 HOH A2125 SITE 1 AC4 4 ASP A 39 ASN A 67 ASP A 157 HOH A2126 SITE 1 AC5 4 HIS A 141 HIS A 143 HIS A 212 ACT A1275 SITE 1 AC6 3 GLU A 27 HIS A 143 GLU A 171 SITE 1 AC7 5 HIS A 46 GLU A 200 HIS A 204 ACT A1276 SITE 2 AC7 5 HOH A2127 CRYST1 92.832 92.832 77.070 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010772 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010772 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012975 0.00000 MTRIX1 1 0.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 0.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 0.000000 0.00000 1