HEADER PROTEIN BINDING 23-AUG-07 2V9H TITLE SOLUTION STRUCTURE OF AN ESCHERICHIA COLI YAET TANDEM POTRA DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER MEMBRANE PROTEIN ASSEMBLY FACTOR YAET; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: POTRA DOMAINS 1 AND 2, RESIDUES 21-174; COMPND 5 SYNONYM: YAET, OMP85; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: MC4100; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: M15PREP4; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE70 KEYWDS YAET, MEMBRANE, POTRA DOMAIN, OUTER MEMBRANE, OUTER MEMBRANE PROTEIN KEYWDS 2 FOLDING, PROTEIN-BINDING, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.J.KNOWLES,M.JEEVES,S.BOBAT,F.DANCEA,D.M.MCCLELLAND,T.PALMER, AUTHOR 2 M.OVERDUIN,I.R.HENDERSON REVDAT 4 15-MAY-24 2V9H 1 REMARK REVDAT 3 15-JAN-20 2V9H 1 REMARK REVDAT 2 24-FEB-09 2V9H 1 VERSN REVDAT 1 06-MAY-08 2V9H 0 JRNL AUTH T.J.KNOWLES,M.JEEVES,S.BOBAT,F.DANCEA,D.M.MCCLELLAND, JRNL AUTH 2 T.PALMER,M.OVERDUIN,I.R.HENDERSON JRNL TITL FOLD AND FUNCTION OF POLYPEPTIDE TRANSPORT-ASSOCIATED JRNL TITL 2 DOMAINS RESPONSIBLE FOR DELIVERING UNFOLDED PROTEINS TO JRNL TITL 3 MEMBRANES. JRNL REF MOL.MICROBIOL. V. 68 1216 2008 JRNL REFN ISSN 0950-382X JRNL PMID 18430136 JRNL DOI 10.1111/J.1365-2958.2008.06225.X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA REMARK 3 AUTHORS : NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2V9H COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1290033543. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303.0 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 86 REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 50 MM MES, 50 MM NACL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HSQC; HNCA; HNCACB; HNCO; CCH REMARK 210 -TOCSY; CBCACONH; HNCOCA; 15N- REMARK 210 NOESY-HSQC; 13C-NOESY-HSQC; ARO- REMARK 210 13C- NOESYHSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY, VNMR, CYANA, REMARK 210 CNS REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 450 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 3 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C, 15N-LABELED YAET21-174 REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 LEU A 175 REMARK 465 GLN A 176 REMARK 465 HIS A 177 REMARK 465 HIS A 178 REMARK 465 HIS A 179 REMARK 465 HIS A 180 REMARK 465 GLN A 181 REMARK 465 THR A 182 REMARK 465 ALA A 183 REMARK 465 GLY A 184 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 35 -35.09 -134.93 REMARK 500 1 VAL A 144 -85.09 -74.94 REMARK 500 1 ARG A 160 18.07 -144.86 REMARK 500 2 VAL A 144 -88.97 -75.24 REMARK 500 2 SER A 148 97.12 64.22 REMARK 500 2 ARG A 160 -89.53 -134.85 REMARK 500 2 ASN A 161 36.52 -167.75 REMARK 500 2 VAL A 173 -33.02 -147.86 REMARK 500 3 GLU A 90 171.09 76.04 REMARK 500 3 ARG A 91 -52.11 -159.79 REMARK 500 3 VAL A 144 -85.98 -76.18 REMARK 500 3 SER A 148 74.47 -115.16 REMARK 500 3 PRO A 159 22.47 -75.77 REMARK 500 3 VAL A 173 -136.81 -89.19 REMARK 500 4 GLN A 35 -58.21 -156.42 REMARK 500 4 GLU A 90 88.20 43.55 REMARK 500 4 VAL A 144 -82.01 -78.55 REMARK 500 5 GLN A 35 -52.48 -157.28 REMARK 500 5 VAL A 144 -83.57 -75.20 REMARK 500 5 PRO A 159 80.07 -66.33 REMARK 500 5 ARG A 160 -112.31 -174.51 REMARK 500 5 VAL A 173 39.74 39.10 REMARK 500 6 GLU A 22 153.93 69.22 REMARK 500 6 GLU A 90 128.30 -25.94 REMARK 500 6 VAL A 144 -84.77 -75.58 REMARK 500 6 ARG A 160 19.37 -144.32 REMARK 500 7 GLU A 22 93.79 60.68 REMARK 500 7 GLU A 32 66.18 -103.64 REMARK 500 7 LEU A 34 71.48 50.56 REMARK 500 7 ARG A 36 -21.89 75.12 REMARK 500 7 SER A 104 -58.81 -141.60 REMARK 500 7 VAL A 144 -88.65 -73.94 REMARK 500 7 PRO A 159 93.58 -59.08 REMARK 500 7 ARG A 160 -92.19 176.30 REMARK 500 7 ASN A 161 28.03 -165.30 REMARK 500 7 GLU A 171 48.46 -99.53 REMARK 500 8 ARG A 36 -28.23 83.17 REMARK 500 8 ARG A 91 -57.12 117.20 REMARK 500 8 SER A 104 -77.05 -72.20 REMARK 500 8 VAL A 144 -96.00 -78.28 REMARK 500 8 PRO A 159 76.96 -66.50 REMARK 500 8 ARG A 160 -115.42 -167.39 REMARK 500 8 ASN A 161 27.35 -144.11 REMARK 500 8 VAL A 173 -78.37 69.47 REMARK 500 9 LEU A 34 -165.47 54.33 REMARK 500 9 GLN A 35 -101.10 -175.13 REMARK 500 9 PRO A 47 34.39 -79.57 REMARK 500 9 ASN A 71 -89.28 -105.01 REMARK 500 9 GLU A 90 90.60 47.70 REMARK 500 9 VAL A 144 -73.27 -79.65 REMARK 500 REMARK 500 THIS ENTRY HAS 140 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15247 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 21-174 PRESENTED HERE DBREF 2V9H A 21 174 UNP P0A940 YAET_ECOLI 21 174 DBREF 2V9H A 175 184 PDB 2V9H 2V9H 175 184 SEQRES 1 A 164 ALA GLU GLY PHE VAL VAL LYS ASP ILE HIS PHE GLU GLY SEQRES 2 A 164 LEU GLN ARG VAL ALA VAL GLY ALA ALA LEU LEU SER MET SEQRES 3 A 164 PRO VAL ARG THR GLY ASP THR VAL ASN ASP GLU ASP ILE SEQRES 4 A 164 SER ASN THR ILE ARG ALA LEU PHE ALA THR GLY ASN PHE SEQRES 5 A 164 GLU ASP VAL ARG VAL LEU ARG ASP GLY ASP THR LEU LEU SEQRES 6 A 164 VAL GLN VAL LYS GLU ARG PRO THR ILE ALA SER ILE THR SEQRES 7 A 164 PHE SER GLY ASN LYS SER VAL LYS ASP ASP MET LEU LYS SEQRES 8 A 164 GLN ASN LEU GLU ALA SER GLY VAL ARG VAL GLY GLU SER SEQRES 9 A 164 LEU ASP ARG THR THR ILE ALA ASP ILE GLU LYS GLY LEU SEQRES 10 A 164 GLU ASP PHE TYR TYR SER VAL GLY LYS TYR SER ALA SER SEQRES 11 A 164 VAL LYS ALA VAL VAL THR PRO LEU PRO ARG ASN ARG VAL SEQRES 12 A 164 ASP LEU LYS LEU VAL PHE GLN GLU GLY VAL SER LEU GLN SEQRES 13 A 164 HIS HIS HIS HIS GLN THR ALA GLY HELIX 1 1 ALA A 38 LEU A 43 1 6 HELIX 2 2 LEU A 44 MET A 46 5 3 HELIX 3 3 ASN A 55 GLY A 70 1 16 HELIX 4 4 LYS A 106 GLY A 118 1 13 HELIX 5 5 THR A 129 LYS A 146 1 18 SHEET 1 AA 2 PHE A 24 VAL A 25 0 SHEET 2 AA 2 THR A 53 VAL A 54 -1 N VAL A 54 O PHE A 24 SHEET 1 AB 3 ASP A 28 GLU A 32 0 SHEET 2 AB 3 THR A 83 LYS A 89 1 O LEU A 84 N HIS A 30 SHEET 3 AB 3 ASP A 74 ASP A 80 -1 O ASP A 74 N LYS A 89 SHEET 1 AC 3 THR A 93 SER A 100 0 SHEET 2 AC 3 ARG A 162 SER A 174 1 O VAL A 163 N ALA A 95 SHEET 3 AC 3 SER A 148 LEU A 158 -1 O SER A 148 N VAL A 173 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1