data_2V9Q # _entry.id 2V9Q # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2V9Q PDBE EBI-33268 WWPDB D_1290033268 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2V9R unspecified 'FIRST AND SECOND IG DOMAINS FROM HUMAN ROBO1 (FORM 2)' PDB 2V9S unspecified 'SECOND LRR DOMAIN OF HUMAN SLIT2' PDB 2V9T unspecified 'COMPLEX BETWEEN THE SECOND LRR DOMAIN OF SLIT2 AND THE FIRST IG DOMAIN FROM ROBO1' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2V9Q _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2007-08-25 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Morlot, C.' 1 'Cusack, S.' 2 'McCarthy, A.A.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structural Insights Into the Slit-Robo Complex.' Proc.Natl.Acad.Sci.USA 104 14923 ? 2007 PNASA6 US 0027-8424 0040 ? 17848514 10.1073/PNAS.0705310104 1 'Cloning, Expression, Crystallization and Preliminary X-Ray Analysis of the First Two Ig Domains from Human Roundabout 1 (Robo1).' 'Acta Crystallogr.,Sect.F' 63 689 ? 2007 ? DK 1744-3091 ? ? 17671369 10.1107/S1744309107033027 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Morlot, C.' 1 primary 'Thielens, N.M.' 2 primary 'Ravelli, R.B.G.' 3 primary 'Hemrika, W.' 4 primary 'Romijn, R.A.' 5 primary 'Gros, P.' 6 primary 'Cusack, S.' 7 primary 'Mccarthy, A.A.' 8 1 'Morlot, C.' 9 1 'Hemrika, W.' 10 1 'Romijn, R.A.' 11 1 'Gros, P.' 12 1 'Cusack, S.' 13 1 'Mccarthy, A.A.' 14 # _cell.entry_id 2V9Q _cell.length_a 38.230 _cell.length_b 68.530 _cell.length_c 103.880 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2V9Q _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ROUNDABOUT HOMOLOG 1' 23587.717 1 ? YES 'IG1-2M, RESIDUES 61-266' ? 2 non-polymer syn 'MERCURY (II) ION' 200.590 2 ? ? ? ? 3 water nat water 18.015 64 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'H-ROBO-1, DELETED IN U TWENTY TWENTY, ROBO1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKS RPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERI TIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKAAAH ; _entity_poly.pdbx_seq_one_letter_code_can ;GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKS RPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERI TIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKAAAH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 LEU n 1 4 ARG n 1 5 GLN n 1 6 GLU n 1 7 ASP n 1 8 PHE n 1 9 PRO n 1 10 PRO n 1 11 ARG n 1 12 ILE n 1 13 VAL n 1 14 GLU n 1 15 HIS n 1 16 PRO n 1 17 SER n 1 18 ASP n 1 19 LEU n 1 20 ILE n 1 21 VAL n 1 22 SER n 1 23 LYS n 1 24 GLY n 1 25 GLU n 1 26 PRO n 1 27 ALA n 1 28 THR n 1 29 LEU n 1 30 ASN n 1 31 CYS n 1 32 LYS n 1 33 ALA n 1 34 GLU n 1 35 GLY n 1 36 ARG n 1 37 PRO n 1 38 THR n 1 39 PRO n 1 40 THR n 1 41 ILE n 1 42 GLU n 1 43 TRP n 1 44 TYR n 1 45 LYS n 1 46 GLY n 1 47 GLY n 1 48 GLU n 1 49 ARG n 1 50 VAL n 1 51 GLU n 1 52 THR n 1 53 ASP n 1 54 LYS n 1 55 ASP n 1 56 ASP n 1 57 PRO n 1 58 ARG n 1 59 SER n 1 60 HIS n 1 61 ARG n 1 62 MET n 1 63 LEU n 1 64 LEU n 1 65 PRO n 1 66 SER n 1 67 GLY n 1 68 SER n 1 69 LEU n 1 70 PHE n 1 71 PHE n 1 72 LEU n 1 73 ARG n 1 74 ILE n 1 75 VAL n 1 76 HIS n 1 77 GLY n 1 78 ARG n 1 79 LYS n 1 80 SER n 1 81 ARG n 1 82 PRO n 1 83 ASP n 1 84 GLU n 1 85 GLY n 1 86 VAL n 1 87 TYR n 1 88 VAL n 1 89 CYS n 1 90 VAL n 1 91 ALA n 1 92 ARG n 1 93 ASN n 1 94 TYR n 1 95 LEU n 1 96 GLY n 1 97 GLU n 1 98 ALA n 1 99 VAL n 1 100 SER n 1 101 HIS n 1 102 ASP n 1 103 ALA n 1 104 SER n 1 105 LEU n 1 106 GLU n 1 107 VAL n 1 108 ALA n 1 109 ILE n 1 110 LEU n 1 111 ARG n 1 112 ASP n 1 113 ASP n 1 114 PHE n 1 115 ARG n 1 116 GLN n 1 117 ASN n 1 118 PRO n 1 119 SER n 1 120 ASP n 1 121 VAL n 1 122 MET n 1 123 VAL n 1 124 ALA n 1 125 VAL n 1 126 GLY n 1 127 GLU n 1 128 PRO n 1 129 ALA n 1 130 VAL n 1 131 MET n 1 132 GLU n 1 133 CYS n 1 134 GLN n 1 135 PRO n 1 136 PRO n 1 137 ARG n 1 138 GLY n 1 139 HIS n 1 140 PRO n 1 141 GLU n 1 142 PRO n 1 143 THR n 1 144 ILE n 1 145 SER n 1 146 TRP n 1 147 LYS n 1 148 LYS n 1 149 ASP n 1 150 GLY n 1 151 SER n 1 152 PRO n 1 153 LEU n 1 154 ASP n 1 155 ASP n 1 156 LYS n 1 157 ASP n 1 158 GLU n 1 159 ARG n 1 160 ILE n 1 161 THR n 1 162 ILE n 1 163 ARG n 1 164 GLY n 1 165 GLY n 1 166 LYS n 1 167 LEU n 1 168 MET n 1 169 ILE n 1 170 THR n 1 171 TYR n 1 172 THR n 1 173 ARG n 1 174 LYS n 1 175 SER n 1 176 ASP n 1 177 ALA n 1 178 GLY n 1 179 LYS n 1 180 TYR n 1 181 VAL n 1 182 CYS n 1 183 VAL n 1 184 GLY n 1 185 THR n 1 186 ASN n 1 187 MET n 1 188 VAL n 1 189 GLY n 1 190 GLU n 1 191 ARG n 1 192 GLU n 1 193 SER n 1 194 GLU n 1 195 VAL n 1 196 ALA n 1 197 GLU n 1 198 LEU n 1 199 THR n 1 200 VAL n 1 201 LEU n 1 202 GLU n 1 203 ARG n 1 204 PRO n 1 205 SER n 1 206 PHE n 1 207 VAL n 1 208 LYS n 1 209 ALA n 1 210 ALA n 1 211 ALA n 1 212 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line HEK293-EBNA1 _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector 'MODIFIED PTT3' _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2V9Q 1 ? ? 2V9Q ? 2 UNP ROBO1_HUMAN 1 ? ? Q9Y6N7 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2V9Q A 1 ? 2 ? 2V9Q 59 ? 60 ? 59 60 2 2 2V9Q A 3 ? 208 ? Q9Y6N7 61 ? 266 ? 61 266 3 1 2V9Q A 209 ? 212 ? 2V9Q 267 ? 270 ? 267 270 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2V9Q _struct_ref_seq_dif.mon_id ASP _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 102 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q9Y6N7 _struct_ref_seq_dif.db_mon_id ASN _struct_ref_seq_dif.pdbx_seq_db_seq_num 160 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 160 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HG non-polymer . 'MERCURY (II) ION' ? 'Hg 2' 200.590 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2V9Q _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.8 _exptl_crystal.density_percent_sol 56 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '18-20% PEG 3350, 0.2M K THIOCYNATE, 0.1M MES, PH=6.5' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2006-09-19 _diffrn_detector.details MIRROR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.009 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 _diffrn_source.pdbx_wavelength 1.009 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2V9Q _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.00 _reflns.d_resolution_high 2.50 _reflns.number_obs 32973 _reflns.number_all ? _reflns.percent_possible_obs 93.1 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.10 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 1.9 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.60 _reflns_shell.percent_possible_all 71.5 _reflns_shell.Rmerge_I_obs 0.32 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.50 _reflns_shell.pdbx_redundancy 1.4 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2V9Q _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.ls_number_reflns_obs 9334 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 98.7 _refine.ls_R_factor_obs 0.229 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.227 _refine.ls_R_factor_R_free 0.280 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 469 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.929 _refine.correlation_coeff_Fo_to_Fc_free 0.900 _refine.B_iso_mean 41.73 _refine.aniso_B[1][1] -1.45000 _refine.aniso_B[2][2] 3.94000 _refine.aniso_B[3][3] -2.49000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.472 _refine.pdbx_overall_ESU_R_Free 0.305 _refine.overall_SU_ML 0.230 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 20.896 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1627 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 64 _refine_hist.number_atoms_total 1693 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.013 0.022 ? 1664 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.602 1.982 ? 2254 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 8.256 5.000 ? 207 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.237 23.026 ? 76 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 22.731 15.000 ? 290 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 21.014 15.000 ? 18 'X-RAY DIFFRACTION' ? r_chiral_restr 0.113 0.200 ? 244 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1275 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.234 0.200 ? 606 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.307 0.200 ? 1084 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.196 0.200 ? 73 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.217 0.200 ? 34 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.306 0.200 ? 7 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.715 1.500 ? 1070 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.211 2.000 ? 1690 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.718 3.000 ? 661 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.120 4.500 ? 564 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.50 _refine_ls_shell.d_res_low 2.57 _refine_ls_shell.number_reflns_R_work 607 _refine_ls_shell.R_factor_R_work 0.3450 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.4200 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 37 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2V9Q _struct.title 'First and second Ig domains from human Robo1' _struct.pdbx_descriptor 'ROUNDABOUT HOMOLOG 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2V9Q _struct_keywords.pdbx_keywords RECEPTOR _struct_keywords.text ;PROTO-ONCOGENE, DIFFERENTIATION, PHOSPHORYLATION, DISEASE MUTATION, NEURONAL DEVELOPMENT, IMMUNOGLOBULIN DOMAIN, CHEMOTAXIS, NEUROGENESIS, GLYCOPROTEIN, TRANSMEMBRANE, ROBO1, MEMBRANE, RECEPTOR, IG DOMAIN, ROUNDABOUT, DEVELOPMENTAL PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 173 ? ALA A 177 ? ARG A 231 ALA A 235 5 ? 5 HELX_P HELX_P2 2 GLU A 202 ? ALA A 210 ? GLU A 260 ALA A 268 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 31 SG ? ? ? 1_555 A CYS 89 SG ? ? A CYS 89 A CYS 147 1_555 ? ? ? ? ? ? ? 2.056 ? disulf2 disulf ? ? A CYS 133 SG ? ? ? 1_555 A CYS 182 SG ? ? A CYS 191 A CYS 240 1_555 ? ? ? ? ? ? ? 2.024 ? metalc1 metalc ? ? B HG . HG ? ? ? 1_555 D HOH . O ? ? A HG 1001 A HOH 2025 1_555 ? ? ? ? ? ? ? 2.978 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ARG 36 A . ? ARG 94 A PRO 37 A ? PRO 95 A 1 -15.59 2 HIS 139 A . ? HIS 197 A PRO 140 A ? PRO 198 A 1 -5.39 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? AB ? 3 ? AC ? 3 ? AD ? 3 ? AE ? 5 ? AF ? 4 ? AG ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AB 1 2 ? parallel AB 2 3 ? anti-parallel AC 1 2 ? parallel AC 2 3 ? anti-parallel AD 1 2 ? anti-parallel AD 2 3 ? anti-parallel AE 1 2 ? parallel AE 2 3 ? anti-parallel AE 3 4 ? anti-parallel AE 4 5 ? anti-parallel AF 1 2 ? parallel AF 2 3 ? anti-parallel AF 3 4 ? anti-parallel AG 1 2 ? anti-parallel AG 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 PHE A 8 ? GLU A 14 ? PHE A 66 GLU A 72 AA 2 LYS A 32 ? ARG A 36 ? LYS A 90 ARG A 94 AB 1 LEU A 19 ? SER A 22 ? LEU A 77 SER A 80 AB 2 ALA A 103 ? LEU A 110 ? ALA A 161 LEU A 168 AB 3 GLY A 85 ? ARG A 92 ? GLY A 143 ARG A 150 AC 1 LEU A 19 ? SER A 22 ? LEU A 77 SER A 80 AC 2 ALA A 103 ? LEU A 110 ? ALA A 161 LEU A 168 AC 3 GLY A 138 ? HIS A 139 ? GLY A 196 HIS A 197 AD 1 ALA A 27 ? LEU A 29 ? ALA A 85 LEU A 87 AD 2 LEU A 69 ? PHE A 71 ? LEU A 127 PHE A 129 AD 3 ARG A 61 ? LEU A 63 ? ARG A 119 LEU A 121 AE 1 VAL A 121 ? ALA A 124 ? VAL A 179 ALA A 182 AE 2 ALA A 196 ? LEU A 201 ? ALA A 254 LEU A 259 AE 3 GLY A 178 ? ASN A 186 ? GLY A 236 ASN A 244 AE 4 THR A 143 ? LYS A 148 ? THR A 201 LYS A 206 AE 5 SER A 151 ? PRO A 152 ? SER A 209 PRO A 210 AF 1 VAL A 121 ? ALA A 124 ? VAL A 179 ALA A 182 AF 2 ALA A 196 ? LEU A 201 ? ALA A 254 LEU A 259 AF 3 GLY A 178 ? ASN A 186 ? GLY A 236 ASN A 244 AF 4 GLY A 189 ? GLU A 192 ? GLY A 247 GLU A 250 AG 1 ALA A 129 ? GLU A 132 ? ALA A 187 GLU A 190 AG 2 LYS A 166 ? ILE A 169 ? LYS A 224 ILE A 227 AG 3 ILE A 160 ? ARG A 163 ? ILE A 218 ARG A 221 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N VAL A 13 ? N VAL A 71 O LYS A 32 ? O LYS A 90 AB 1 2 N LEU A 19 ? N LEU A 77 O SER A 104 ? O SER A 162 AB 2 3 N LEU A 105 ? N LEU A 163 O GLY A 85 ? O GLY A 143 AC 1 2 N LEU A 19 ? N LEU A 77 O SER A 104 ? O SER A 162 AC 2 3 N ILE A 109 ? N ILE A 167 O HIS A 139 ? O HIS A 197 AD 1 2 N LEU A 29 ? N LEU A 87 O LEU A 69 ? O LEU A 127 AD 2 3 N PHE A 70 ? N PHE A 128 O MET A 62 ? O MET A 120 AE 1 2 N VAL A 121 ? N VAL A 179 O GLU A 197 ? O GLU A 255 AE 2 3 N LEU A 198 ? N LEU A 256 O GLY A 178 ? O GLY A 236 AE 3 4 N THR A 185 ? N THR A 243 O THR A 143 ? O THR A 201 AE 4 5 N LYS A 148 ? N LYS A 206 O SER A 151 ? O SER A 209 AF 1 2 N VAL A 121 ? N VAL A 179 O GLU A 197 ? O GLU A 255 AF 2 3 N LEU A 198 ? N LEU A 256 O GLY A 178 ? O GLY A 236 AF 3 4 N ASN A 186 ? N ASN A 244 O GLY A 189 ? O GLY A 247 AG 1 2 N MET A 131 ? N MET A 189 O LEU A 167 ? O LEU A 225 AG 2 3 N MET A 168 ? N MET A 226 O THR A 161 ? O THR A 219 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 1 _struct_site.details 'BINDING SITE FOR RESIDUE HG A1001' # _struct_site_gen.id 1 _struct_site_gen.site_id AC1 _struct_site_gen.pdbx_num_res 1 _struct_site_gen.label_comp_id HOH _struct_site_gen.label_asym_id D _struct_site_gen.label_seq_id . _struct_site_gen.pdbx_auth_ins_code ? _struct_site_gen.auth_comp_id HOH _struct_site_gen.auth_asym_id A _struct_site_gen.auth_seq_id 2025 _struct_site_gen.label_atom_id . _struct_site_gen.label_alt_id ? _struct_site_gen.symmetry 1_555 _struct_site_gen.details ? # _database_PDB_matrix.entry_id 2V9Q _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2V9Q _atom_sites.fract_transf_matrix[1][1] 0.026157 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014592 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009626 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C HG N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 59 ? ? ? A . n A 1 2 SER 2 60 ? ? ? A . n A 1 3 LEU 3 61 61 LEU LEU A . n A 1 4 ARG 4 62 62 ARG ARG A . n A 1 5 GLN 5 63 63 GLN GLN A . n A 1 6 GLU 6 64 64 GLU GLU A . n A 1 7 ASP 7 65 65 ASP ASP A . n A 1 8 PHE 8 66 66 PHE PHE A . n A 1 9 PRO 9 67 67 PRO PRO A . n A 1 10 PRO 10 68 68 PRO PRO A . n A 1 11 ARG 11 69 69 ARG ARG A . n A 1 12 ILE 12 70 70 ILE ILE A . n A 1 13 VAL 13 71 71 VAL VAL A . n A 1 14 GLU 14 72 72 GLU GLU A . n A 1 15 HIS 15 73 73 HIS HIS A . n A 1 16 PRO 16 74 74 PRO PRO A . n A 1 17 SER 17 75 75 SER SER A . n A 1 18 ASP 18 76 76 ASP ASP A . n A 1 19 LEU 19 77 77 LEU LEU A . n A 1 20 ILE 20 78 78 ILE ILE A . n A 1 21 VAL 21 79 79 VAL VAL A . n A 1 22 SER 22 80 80 SER SER A . n A 1 23 LYS 23 81 81 LYS LYS A . n A 1 24 GLY 24 82 82 GLY GLY A . n A 1 25 GLU 25 83 83 GLU GLU A . n A 1 26 PRO 26 84 84 PRO PRO A . n A 1 27 ALA 27 85 85 ALA ALA A . n A 1 28 THR 28 86 86 THR THR A . n A 1 29 LEU 29 87 87 LEU LEU A . n A 1 30 ASN 30 88 88 ASN ASN A . n A 1 31 CYS 31 89 89 CYS CYS A . n A 1 32 LYS 32 90 90 LYS LYS A . n A 1 33 ALA 33 91 91 ALA ALA A . n A 1 34 GLU 34 92 92 GLU GLU A . n A 1 35 GLY 35 93 93 GLY GLY A . n A 1 36 ARG 36 94 94 ARG ARG A . n A 1 37 PRO 37 95 95 PRO PRO A . n A 1 38 THR 38 96 96 THR THR A . n A 1 39 PRO 39 97 97 PRO PRO A . n A 1 40 THR 40 98 98 THR THR A . n A 1 41 ILE 41 99 99 ILE ILE A . n A 1 42 GLU 42 100 100 GLU GLU A . n A 1 43 TRP 43 101 101 TRP TRP A . n A 1 44 TYR 44 102 102 TYR TYR A . n A 1 45 LYS 45 103 103 LYS LYS A . n A 1 46 GLY 46 104 104 GLY GLY A . n A 1 47 GLY 47 105 105 GLY GLY A . n A 1 48 GLU 48 106 106 GLU GLU A . n A 1 49 ARG 49 107 107 ARG ARG A . n A 1 50 VAL 50 108 108 VAL VAL A . n A 1 51 GLU 51 109 109 GLU GLU A . n A 1 52 THR 52 110 110 THR THR A . n A 1 53 ASP 53 111 111 ASP ASP A . n A 1 54 LYS 54 112 112 LYS LYS A . n A 1 55 ASP 55 113 113 ASP ASP A . n A 1 56 ASP 56 114 114 ASP ASP A . n A 1 57 PRO 57 115 115 PRO PRO A . n A 1 58 ARG 58 116 116 ARG ARG A . n A 1 59 SER 59 117 117 SER SER A . n A 1 60 HIS 60 118 118 HIS HIS A . n A 1 61 ARG 61 119 119 ARG ARG A . n A 1 62 MET 62 120 120 MET MET A . n A 1 63 LEU 63 121 121 LEU LEU A . n A 1 64 LEU 64 122 122 LEU LEU A . n A 1 65 PRO 65 123 123 PRO PRO A . n A 1 66 SER 66 124 124 SER SER A . n A 1 67 GLY 67 125 125 GLY GLY A . n A 1 68 SER 68 126 126 SER SER A . n A 1 69 LEU 69 127 127 LEU LEU A . n A 1 70 PHE 70 128 128 PHE PHE A . n A 1 71 PHE 71 129 129 PHE PHE A . n A 1 72 LEU 72 130 130 LEU LEU A . n A 1 73 ARG 73 131 131 ARG ARG A . n A 1 74 ILE 74 132 132 ILE ILE A . n A 1 75 VAL 75 133 133 VAL VAL A . n A 1 76 HIS 76 134 134 HIS HIS A . n A 1 77 GLY 77 135 135 GLY GLY A . n A 1 78 ARG 78 136 136 ARG ARG A . n A 1 79 LYS 79 137 137 LYS LYS A . n A 1 80 SER 80 138 138 SER SER A . n A 1 81 ARG 81 139 139 ARG ARG A . n A 1 82 PRO 82 140 140 PRO PRO A . n A 1 83 ASP 83 141 141 ASP ASP A . n A 1 84 GLU 84 142 142 GLU GLU A . n A 1 85 GLY 85 143 143 GLY GLY A . n A 1 86 VAL 86 144 144 VAL VAL A . n A 1 87 TYR 87 145 145 TYR TYR A . n A 1 88 VAL 88 146 146 VAL VAL A . n A 1 89 CYS 89 147 147 CYS CYS A . n A 1 90 VAL 90 148 148 VAL VAL A . n A 1 91 ALA 91 149 149 ALA ALA A . n A 1 92 ARG 92 150 150 ARG ARG A . n A 1 93 ASN 93 151 151 ASN ASN A . n A 1 94 TYR 94 152 152 TYR TYR A . n A 1 95 LEU 95 153 153 LEU LEU A . n A 1 96 GLY 96 154 154 GLY GLY A . n A 1 97 GLU 97 155 155 GLU GLU A . n A 1 98 ALA 98 156 156 ALA ALA A . n A 1 99 VAL 99 157 157 VAL VAL A . n A 1 100 SER 100 158 158 SER SER A . n A 1 101 HIS 101 159 159 HIS HIS A . n A 1 102 ASP 102 160 160 ASP ASP A . n A 1 103 ALA 103 161 161 ALA ALA A . n A 1 104 SER 104 162 162 SER SER A . n A 1 105 LEU 105 163 163 LEU LEU A . n A 1 106 GLU 106 164 164 GLU GLU A . n A 1 107 VAL 107 165 165 VAL VAL A . n A 1 108 ALA 108 166 166 ALA ALA A . n A 1 109 ILE 109 167 167 ILE ILE A . n A 1 110 LEU 110 168 168 LEU LEU A . n A 1 111 ARG 111 169 169 ARG ARG A . n A 1 112 ASP 112 170 170 ASP ASP A . n A 1 113 ASP 113 171 171 ASP ASP A . n A 1 114 PHE 114 172 172 PHE PHE A . n A 1 115 ARG 115 173 173 ARG ARG A . n A 1 116 GLN 116 174 174 GLN GLN A . n A 1 117 ASN 117 175 175 ASN ASN A . n A 1 118 PRO 118 176 176 PRO PRO A . n A 1 119 SER 119 177 177 SER SER A . n A 1 120 ASP 120 178 178 ASP ASP A . n A 1 121 VAL 121 179 179 VAL VAL A . n A 1 122 MET 122 180 180 MET MET A . n A 1 123 VAL 123 181 181 VAL VAL A . n A 1 124 ALA 124 182 182 ALA ALA A . n A 1 125 VAL 125 183 183 VAL VAL A . n A 1 126 GLY 126 184 184 GLY GLY A . n A 1 127 GLU 127 185 185 GLU GLU A . n A 1 128 PRO 128 186 186 PRO PRO A . n A 1 129 ALA 129 187 187 ALA ALA A . n A 1 130 VAL 130 188 188 VAL VAL A . n A 1 131 MET 131 189 189 MET MET A . n A 1 132 GLU 132 190 190 GLU GLU A . n A 1 133 CYS 133 191 191 CYS CYS A . n A 1 134 GLN 134 192 192 GLN GLN A . n A 1 135 PRO 135 193 193 PRO PRO A . n A 1 136 PRO 136 194 194 PRO PRO A . n A 1 137 ARG 137 195 195 ARG ARG A . n A 1 138 GLY 138 196 196 GLY GLY A . n A 1 139 HIS 139 197 197 HIS HIS A . n A 1 140 PRO 140 198 198 PRO PRO A . n A 1 141 GLU 141 199 199 GLU GLU A . n A 1 142 PRO 142 200 200 PRO PRO A . n A 1 143 THR 143 201 201 THR THR A . n A 1 144 ILE 144 202 202 ILE ILE A . n A 1 145 SER 145 203 203 SER SER A . n A 1 146 TRP 146 204 204 TRP TRP A . n A 1 147 LYS 147 205 205 LYS LYS A . n A 1 148 LYS 148 206 206 LYS LYS A . n A 1 149 ASP 149 207 207 ASP ASP A . n A 1 150 GLY 150 208 208 GLY GLY A . n A 1 151 SER 151 209 209 SER SER A . n A 1 152 PRO 152 210 210 PRO PRO A . n A 1 153 LEU 153 211 211 LEU LEU A . n A 1 154 ASP 154 212 212 ASP ASP A . n A 1 155 ASP 155 213 213 ASP ASP A . n A 1 156 LYS 156 214 214 LYS LYS A . n A 1 157 ASP 157 215 215 ASP ASP A . n A 1 158 GLU 158 216 216 GLU GLU A . n A 1 159 ARG 159 217 217 ARG ARG A . n A 1 160 ILE 160 218 218 ILE ILE A . n A 1 161 THR 161 219 219 THR THR A . n A 1 162 ILE 162 220 220 ILE ILE A . n A 1 163 ARG 163 221 221 ARG ARG A . n A 1 164 GLY 164 222 222 GLY GLY A . n A 1 165 GLY 165 223 223 GLY GLY A . n A 1 166 LYS 166 224 224 LYS LYS A . n A 1 167 LEU 167 225 225 LEU LEU A . n A 1 168 MET 168 226 226 MET MET A . n A 1 169 ILE 169 227 227 ILE ILE A . n A 1 170 THR 170 228 228 THR THR A . n A 1 171 TYR 171 229 229 TYR TYR A . n A 1 172 THR 172 230 230 THR THR A . n A 1 173 ARG 173 231 231 ARG ARG A . n A 1 174 LYS 174 232 232 LYS LYS A . n A 1 175 SER 175 233 233 SER SER A . n A 1 176 ASP 176 234 234 ASP ASP A . n A 1 177 ALA 177 235 235 ALA ALA A . n A 1 178 GLY 178 236 236 GLY GLY A . n A 1 179 LYS 179 237 237 LYS LYS A . n A 1 180 TYR 180 238 238 TYR TYR A . n A 1 181 VAL 181 239 239 VAL VAL A . n A 1 182 CYS 182 240 240 CYS CYS A . n A 1 183 VAL 183 241 241 VAL VAL A . n A 1 184 GLY 184 242 242 GLY GLY A . n A 1 185 THR 185 243 243 THR THR A . n A 1 186 ASN 186 244 244 ASN ASN A . n A 1 187 MET 187 245 245 MET MET A . n A 1 188 VAL 188 246 246 VAL VAL A . n A 1 189 GLY 189 247 247 GLY GLY A . n A 1 190 GLU 190 248 248 GLU GLU A . n A 1 191 ARG 191 249 249 ARG ARG A . n A 1 192 GLU 192 250 250 GLU GLU A . n A 1 193 SER 193 251 251 SER SER A . n A 1 194 GLU 194 252 252 GLU GLU A . n A 1 195 VAL 195 253 253 VAL VAL A . n A 1 196 ALA 196 254 254 ALA ALA A . n A 1 197 GLU 197 255 255 GLU GLU A . n A 1 198 LEU 198 256 256 LEU LEU A . n A 1 199 THR 199 257 257 THR THR A . n A 1 200 VAL 200 258 258 VAL VAL A . n A 1 201 LEU 201 259 259 LEU LEU A . n A 1 202 GLU 202 260 260 GLU GLU A . n A 1 203 ARG 203 261 261 ARG ARG A . n A 1 204 PRO 204 262 262 PRO PRO A . n A 1 205 SER 205 263 263 SER SER A . n A 1 206 PHE 206 264 264 PHE PHE A . n A 1 207 VAL 207 265 265 VAL VAL A . n A 1 208 LYS 208 266 266 LYS LYS A . n A 1 209 ALA 209 267 267 ALA ALA A . n A 1 210 ALA 210 268 268 ALA ALA A . n A 1 211 ALA 211 269 ? ? ? A . n A 1 212 HIS 212 270 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HG 1 1001 1001 HG HG A . C 2 HG 1 1002 1002 HG HG A . D 3 HOH 1 2001 2001 HOH HOH A . D 3 HOH 2 2002 2002 HOH HOH A . D 3 HOH 3 2003 2003 HOH HOH A . D 3 HOH 4 2004 2004 HOH HOH A . D 3 HOH 5 2005 2005 HOH HOH A . D 3 HOH 6 2006 2006 HOH HOH A . D 3 HOH 7 2007 2007 HOH HOH A . D 3 HOH 8 2008 2008 HOH HOH A . D 3 HOH 9 2009 2009 HOH HOH A . D 3 HOH 10 2010 2010 HOH HOH A . D 3 HOH 11 2011 2011 HOH HOH A . D 3 HOH 12 2012 2012 HOH HOH A . D 3 HOH 13 2013 2013 HOH HOH A . D 3 HOH 14 2014 2014 HOH HOH A . D 3 HOH 15 2015 2015 HOH HOH A . D 3 HOH 16 2016 2016 HOH HOH A . D 3 HOH 17 2017 2017 HOH HOH A . D 3 HOH 18 2018 2018 HOH HOH A . D 3 HOH 19 2019 2019 HOH HOH A . D 3 HOH 20 2020 2020 HOH HOH A . D 3 HOH 21 2021 2021 HOH HOH A . D 3 HOH 22 2022 2022 HOH HOH A . D 3 HOH 23 2023 2023 HOH HOH A . D 3 HOH 24 2024 2024 HOH HOH A . D 3 HOH 25 2025 2025 HOH HOH A . D 3 HOH 26 2026 2026 HOH HOH A . D 3 HOH 27 2027 2027 HOH HOH A . D 3 HOH 28 2028 2028 HOH HOH A . D 3 HOH 29 2029 2029 HOH HOH A . D 3 HOH 30 2030 2030 HOH HOH A . D 3 HOH 31 2031 2031 HOH HOH A . D 3 HOH 32 2032 2032 HOH HOH A . D 3 HOH 33 2033 2033 HOH HOH A . D 3 HOH 34 2034 2034 HOH HOH A . D 3 HOH 35 2035 2035 HOH HOH A . D 3 HOH 36 2036 2036 HOH HOH A . D 3 HOH 37 2037 2037 HOH HOH A . D 3 HOH 38 2038 2038 HOH HOH A . D 3 HOH 39 2039 2039 HOH HOH A . D 3 HOH 40 2040 2040 HOH HOH A . D 3 HOH 41 2041 2041 HOH HOH A . D 3 HOH 42 2042 2042 HOH HOH A . D 3 HOH 43 2043 2043 HOH HOH A . D 3 HOH 44 2044 2044 HOH HOH A . D 3 HOH 45 2045 2045 HOH HOH A . D 3 HOH 46 2046 2046 HOH HOH A . D 3 HOH 47 2047 2047 HOH HOH A . D 3 HOH 48 2048 2048 HOH HOH A . D 3 HOH 49 2049 2049 HOH HOH A . D 3 HOH 50 2050 2050 HOH HOH A . D 3 HOH 51 2051 2051 HOH HOH A . D 3 HOH 52 2052 2052 HOH HOH A . D 3 HOH 53 2053 2053 HOH HOH A . D 3 HOH 54 2054 2054 HOH HOH A . D 3 HOH 55 2055 2055 HOH HOH A . D 3 HOH 56 2056 2056 HOH HOH A . D 3 HOH 57 2057 2057 HOH HOH A . D 3 HOH 58 2058 2058 HOH HOH A . D 3 HOH 59 2059 2059 HOH HOH A . D 3 HOH 60 2060 2060 HOH HOH A . D 3 HOH 61 2061 2061 HOH HOH A . D 3 HOH 62 2062 2062 HOH HOH A . D 3 HOH 63 2063 2063 HOH HOH A . D 3 HOH 64 2064 2064 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 2056 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-09-25 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 9.9441 -17.8426 -36.4342 0.0495 0.1103 -0.0679 -0.0726 0.0131 0.0502 0.9031 0.9812 4.6230 0.2440 -0.3137 -0.4871 -0.1353 0.2715 0.0401 -0.1832 0.0853 -0.0886 -0.0684 -0.0523 0.0500 'X-RAY DIFFRACTION' 2 ? refined 10.4362 -10.2947 9.4598 -0.0316 0.0159 0.0230 0.0035 0.0252 0.0255 0.9105 0.4676 4.9129 -0.2546 1.5105 0.4343 -0.0229 -0.0752 -0.0030 -0.0592 0.0856 0.0868 -0.0539 0.1651 -0.0628 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 61 ? ? A 166 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 167 ? ? A 268 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 XDS 'data reduction' . ? 2 XSCALE 'data scaling' . ? 3 SHARP phasing . ? 4 # _pdbx_database_remark.id 700 _pdbx_database_remark.text ; SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, TWO SHEETS ARE DEFINED. ; # _pdbx_entry_details.entry_id 2V9Q _pdbx_entry_details.compound_details 'ENGINEERED RESIDUE IN CHAIN A, ASN 160 TO ASP' _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;A N160D MUTATION WAS MADE TO PREVENT POTENTIAL GLYCOSYLATION ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 89 ? ? -171.38 124.27 2 1 PRO A 95 ? ? -31.55 156.74 3 1 HIS A 134 ? ? -169.05 100.54 4 1 ASN A 151 ? ? -125.15 -159.28 5 1 ASP A 171 ? ? -57.39 107.90 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 PRO _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 95 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 THR _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 96 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 57.78 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 59 ? A GLY 1 2 1 Y 1 A SER 60 ? A SER 2 3 1 Y 1 A ALA 269 ? A ALA 211 4 1 Y 1 A HIS 270 ? A HIS 212 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MERCURY (II) ION' HG 3 water HOH #