HEADER RECEPTOR 25-AUG-07 2V9R TITLE FIRST AND SECOND IG DOMAINS FROM HUMAN ROBO1 (FORM 2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ROUNDABOUT HOMOLOG 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: IG1-2M, RESIDUES 61-266; COMPND 5 SYNONYM: H-ROBO-1, DELETED IN U TWENTY TWENTY, ROBO1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HEK293-EBNA1; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: MODIFIED PTT3 KEYWDS PROTO-ONCOGENE, DIFFERENTIATION, PHOSPHORYLATION, DISEASE MUTATION, KEYWDS 2 NEURONAL DEVELOPMENT, IMMUNOGLOBULIN DOMAIN, CHEMOTAXIS, KEYWDS 3 NEUROGENESIS, GLYCOPROTEIN, TRANSMEMBRANE, ROBO1, MEMBRANE, KEYWDS 4 RECEPTOR, IG DOMAIN, ROUNDABOUT, DEVELOPMENTAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.MORLOT,S.CUSACK,A.A.MCCARTHY REVDAT 5 13-DEC-23 2V9R 1 REMARK REVDAT 4 13-JUL-11 2V9R 1 VERSN REVDAT 3 24-FEB-09 2V9R 1 VERSN REVDAT 2 02-OCT-07 2V9R 1 JRNL REVDAT 1 25-SEP-07 2V9R 0 JRNL AUTH C.MORLOT,N.M.THIELENS,R.B.RAVELLI,W.HEMRIKA,R.A.ROMIJN, JRNL AUTH 2 P.GROS,S.CUSACK,A.A.MCCARTHY JRNL TITL STRUCTURAL INSIGHTS INTO THE SLIT-ROBO COMPLEX. JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 14923 2007 JRNL REFN ISSN 0027-8424 JRNL PMID 17848514 JRNL DOI 10.1073/PNAS.0705310104 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.MORLOT,W.HEMRIKA,R.A.ROMIJN,P.GROS,S.CUSACK,A.A.MCCARTHY REMARK 1 TITL CLONING, EXPRESSION, CRYSTALLIZATION AND PRELIMINARY X-RAY REMARK 1 TITL 2 ANALYSIS OF THE FIRST TWO IG DOMAINS FROM HUMAN ROUNDABOUT 1 REMARK 1 TITL 3 (ROBO1). REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 63 689 2007 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 17671369 REMARK 1 DOI 10.1107/S1744309107033027 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 14074 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.261 REMARK 3 R VALUE (WORKING SET) : 0.258 REMARK 3 FREE R VALUE : 0.335 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 751 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1034 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3170 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.4660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1531 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 53 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.87000 REMARK 3 B22 (A**2) : -2.54000 REMARK 3 B33 (A**2) : -0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.243 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.232 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.218 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.071 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.894 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.837 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1606 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2184 ; 1.701 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 204 ; 7.291 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 72 ;37.337 ;23.056 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 280 ;20.605 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;13.674 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 237 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1227 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 640 ; 0.231 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1042 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 88 ; 0.188 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 52 ; 0.354 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.229 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1032 ; 0.787 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1631 ; 1.199 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 642 ; 1.904 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 550 ; 2.811 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 64 A 165 REMARK 3 ORIGIN FOR THE GROUP (A): 32.5370 65.7170 -5.0530 REMARK 3 T TENSOR REMARK 3 T11: 0.0037 T22: 0.0664 REMARK 3 T33: -0.0944 T12: 0.0916 REMARK 3 T13: -0.0001 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 1.1748 L22: 2.3681 REMARK 3 L33: 1.8198 L12: -0.1051 REMARK 3 L13: -0.5543 L23: 0.3831 REMARK 3 S TENSOR REMARK 3 S11: -0.0549 S12: -0.1473 S13: -0.0594 REMARK 3 S21: -0.0032 S22: -0.0084 S23: 0.1012 REMARK 3 S31: -0.0914 S32: -0.1238 S33: 0.0634 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 166 A 260 REMARK 3 ORIGIN FOR THE GROUP (A): 2.6550 38.4410 8.7920 REMARK 3 T TENSOR REMARK 3 T11: 0.1287 T22: 0.0257 REMARK 3 T33: 0.3535 T12: -0.0278 REMARK 3 T13: 0.0456 T23: 0.0805 REMARK 3 L TENSOR REMARK 3 L11: 5.4322 L22: 6.5921 REMARK 3 L33: 2.1491 L12: 5.8593 REMARK 3 L13: -2.7705 L23: -2.5408 REMARK 3 S TENSOR REMARK 3 S11: 0.2824 S12: 0.1545 S13: 1.2760 REMARK 3 S21: 0.1109 S22: 0.2810 S23: 1.0686 REMARK 3 S31: -0.1544 S32: -0.1327 S33: -0.5633 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. THIS IS A SECOND CRYSTAL FORM OF THE SUBMISSION ABOVE, REMARK 3 ROBO1 IG1-2. ALTHOUGH IT DIFFRACTED TO A HIGHER RESOLUTION THE REMARK 3 R AND RFREE ARE LARGER THAN EXPECTED FOR THIS RESOLUTION. THIS REMARK 3 IS PROBABLY DUE TO THE PRESENCE OF A WEAK SUPER LATTICE THAT WAS REMARK 3 OBSERVED IN THE DIFFRACTION PATTERN. REMARK 4 REMARK 4 2V9R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1290033270. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.939 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54927 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.20000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2V9Q REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 6000, 0.1M LISO4, 0.1M NA REMARK 280 CITRATE, PH 5.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 38.73000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.05000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.73000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.05000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2041 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASN 160 TO ASP REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 59 REMARK 465 SER A 60 REMARK 465 LEU A 61 REMARK 465 ARG A 62 REMARK 465 GLN A 63 REMARK 465 ARG A 261 REMARK 465 PRO A 262 REMARK 465 SER A 263 REMARK 465 PHE A 264 REMARK 465 VAL A 265 REMARK 465 LYS A 266 REMARK 465 ALA A 267 REMARK 465 ALA A 268 REMARK 465 ALA A 269 REMARK 465 HIS A 270 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 ASP A 213 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 134 90.42 -164.14 REMARK 500 VAL A 183 124.78 -29.60 REMARK 500 PRO A 194 163.14 -43.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1261 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1262 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2V9Q RELATED DB: PDB REMARK 900 FIRST AND SECOND IG DOMAINS FROM HUMAN ROBO1 REMARK 900 RELATED ID: 2V9S RELATED DB: PDB REMARK 900 SECOND LRR DOMAIN OF HUMAN SLIT2 REMARK 900 RELATED ID: 2V9T RELATED DB: PDB REMARK 900 COMPLEX BETWEEN THE SECOND LRR DOMAIN OF SLIT2 AND THE FIRST IG REMARK 900 DOMAIN FROM ROBO1 REMARK 999 REMARK 999 SEQUENCE REMARK 999 A N160D MUTATION WAS MADE TO PREVENT POTENTIAL REMARK 999 GLYCOSYLATION DBREF 2V9R A 59 60 PDB 2V9R 2V9R 59 60 DBREF 2V9R A 61 266 UNP Q9Y6N7 ROBO1_HUMAN 61 266 DBREF 2V9R A 267 270 PDB 2V9R 2V9R 267 270 SEQADV 2V9R ASP A 160 UNP Q9Y6N7 ASN 160 ENGINEERED MUTATION SEQRES 1 A 212 GLY SER LEU ARG GLN GLU ASP PHE PRO PRO ARG ILE VAL SEQRES 2 A 212 GLU HIS PRO SER ASP LEU ILE VAL SER LYS GLY GLU PRO SEQRES 3 A 212 ALA THR LEU ASN CYS LYS ALA GLU GLY ARG PRO THR PRO SEQRES 4 A 212 THR ILE GLU TRP TYR LYS GLY GLY GLU ARG VAL GLU THR SEQRES 5 A 212 ASP LYS ASP ASP PRO ARG SER HIS ARG MET LEU LEU PRO SEQRES 6 A 212 SER GLY SER LEU PHE PHE LEU ARG ILE VAL HIS GLY ARG SEQRES 7 A 212 LYS SER ARG PRO ASP GLU GLY VAL TYR VAL CYS VAL ALA SEQRES 8 A 212 ARG ASN TYR LEU GLY GLU ALA VAL SER HIS ASP ALA SER SEQRES 9 A 212 LEU GLU VAL ALA ILE LEU ARG ASP ASP PHE ARG GLN ASN SEQRES 10 A 212 PRO SER ASP VAL MET VAL ALA VAL GLY GLU PRO ALA VAL SEQRES 11 A 212 MET GLU CYS GLN PRO PRO ARG GLY HIS PRO GLU PRO THR SEQRES 12 A 212 ILE SER TRP LYS LYS ASP GLY SER PRO LEU ASP ASP LYS SEQRES 13 A 212 ASP GLU ARG ILE THR ILE ARG GLY GLY LYS LEU MET ILE SEQRES 14 A 212 THR TYR THR ARG LYS SER ASP ALA GLY LYS TYR VAL CYS SEQRES 15 A 212 VAL GLY THR ASN MET VAL GLY GLU ARG GLU SER GLU VAL SEQRES 16 A 212 ALA GLU LEU THR VAL LEU GLU ARG PRO SER PHE VAL LYS SEQRES 17 A 212 ALA ALA ALA HIS HET SO4 A1261 5 HET SO4 A1262 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 HOH *53(H2 O) HELIX 1 1 ARG A 231 ALA A 235 5 5 SHEET 1 AA 2 PHE A 66 GLU A 72 0 SHEET 2 AA 2 LYS A 90 ARG A 94 -1 O LYS A 90 N VAL A 71 SHEET 1 AB 5 LEU A 77 VAL A 79 0 SHEET 2 AB 5 ALA A 161 VAL A 165 1 O SER A 162 N LEU A 77 SHEET 3 AB 5 GLY A 143 ASN A 151 -1 O GLY A 143 N LEU A 163 SHEET 4 AB 5 THR A 98 LYS A 103 -1 O THR A 98 N ARG A 150 SHEET 5 AB 5 GLU A 106 ARG A 107 -1 O GLU A 106 N LYS A 103 SHEET 1 AC 4 LEU A 77 VAL A 79 0 SHEET 2 AC 4 ALA A 161 VAL A 165 1 O SER A 162 N LEU A 77 SHEET 3 AC 4 GLY A 143 ASN A 151 -1 O GLY A 143 N LEU A 163 SHEET 4 AC 4 GLY A 154 VAL A 157 -1 O GLY A 154 N ASN A 151 SHEET 1 AD 3 ALA A 85 LEU A 87 0 SHEET 2 AD 3 LEU A 127 PHE A 129 -1 O LEU A 127 N LEU A 87 SHEET 3 AD 3 ARG A 119 LEU A 121 -1 O MET A 120 N PHE A 128 SHEET 1 AE 2 ILE A 167 LEU A 168 0 SHEET 2 AE 2 GLY A 196 HIS A 197 -1 O HIS A 197 N ILE A 167 SHEET 1 AF 5 VAL A 179 ALA A 182 0 SHEET 2 AF 5 ALA A 254 LEU A 259 1 O GLU A 255 N VAL A 179 SHEET 3 AF 5 GLY A 236 ASN A 244 -1 O GLY A 236 N LEU A 256 SHEET 4 AF 5 THR A 201 LYS A 206 -1 O THR A 201 N THR A 243 SHEET 5 AF 5 SER A 209 LEU A 211 -1 O SER A 209 N LYS A 206 SHEET 1 AG 4 VAL A 179 ALA A 182 0 SHEET 2 AG 4 ALA A 254 LEU A 259 1 O GLU A 255 N VAL A 179 SHEET 3 AG 4 GLY A 236 ASN A 244 -1 O GLY A 236 N LEU A 256 SHEET 4 AG 4 GLY A 247 GLU A 250 -1 O GLY A 247 N ASN A 244 SHEET 1 AH 3 ALA A 187 GLU A 190 0 SHEET 2 AH 3 LYS A 224 ILE A 227 -1 O LEU A 225 N MET A 189 SHEET 3 AH 3 ILE A 218 ARG A 221 -1 O THR A 219 N MET A 226 SSBOND 1 CYS A 89 CYS A 147 1555 1555 2.02 SSBOND 2 CYS A 191 CYS A 240 1555 1555 2.02 CISPEP 1 ARG A 94 PRO A 95 0 0.86 CISPEP 2 HIS A 197 PRO A 198 0 -7.24 SITE 1 AC1 7 GLU A 109 ASP A 114 ARG A 116 ASP A 213 SITE 2 AC1 7 GLU A 216 ILE A 218 THR A 219 SITE 1 AC2 3 ASP A 76 ASP A 160 HOH A2053 CRYST1 77.460 108.100 25.030 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012910 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009251 0.000000 0.00000 SCALE3 0.000000 0.000000 0.039952 0.00000