data_2VA4 # _entry.id 2VA4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2VA4 PDBE EBI-33623 WWPDB D_1290033623 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2011-02-23 _pdbx_database_PDB_obs_spr.pdb_id 2XY1 _pdbx_database_PDB_obs_spr.replace_pdb_id 2VA4 _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2V5T unspecified 'CRYSTAL STRUCTURE OF NCAM2 IG2-3' PDB 2DOC unspecified 'SOLUTION STRUCTURE OF THE FIBRONECTIN TYPE- III DOMAIN OFHUMAN NEURAL CELL ADHESION MOLECULE 2' PDB 2V44 unspecified 'CRYSTAL STRUCTURE OF NCAM2 IG1-2' PDB 2VAJ unspecified 'CRYSTAL STRUCTURE OF NCAM2 IG1 (I4122 CELL UNIT)' # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 2VA4 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2007-08-30 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kulahin, N.' 1 'Rasmussen, K.K.' 2 'Kristensen, O.' 3 'Berezin, V.' 4 'Bock, E.' 5 'Walmod, P.' 6 'Gajhede, M.' 7 # _citation.id primary _citation.title 'Crystal Structure of Ncam2 Ig34' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kulahin, N.' 1 primary 'Rasmussen, K.K.' 2 primary 'Kristensen, O.' 3 primary 'Berezin, V.' 4 primary 'Bock, E.' 5 primary 'Walmod, P.' 6 primary 'Gajhede, M.' 7 # _cell.entry_id 2VA4 _cell.length_a 43.900 _cell.length_b 45.800 _cell.length_c 46.100 _cell.angle_alpha 90.00 _cell.angle_beta 103.20 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VA4 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'NEURAL CELL ADHESION MOLECULE 2' 21276.721 1 ? ? 'IG34, RESIDUES 209-398' ? 2 non-polymer man N-ACETYL-D-GLUCOSAMINE 221.208 2 ? ? ? ? 3 water nat water 18.015 99 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'NCAM2, N-CAM 2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SMPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNK AGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLH IKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE ; _entity_poly.pdbx_seq_one_letter_code_can ;SMPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNK AGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLH IKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 PRO n 1 4 ALA n 1 5 ILE n 1 6 SER n 1 7 MET n 1 8 PRO n 1 9 GLN n 1 10 LYS n 1 11 SER n 1 12 PHE n 1 13 ASN n 1 14 ALA n 1 15 THR n 1 16 ALA n 1 17 GLU n 1 18 ARG n 1 19 GLY n 1 20 GLU n 1 21 GLU n 1 22 MET n 1 23 THR n 1 24 PHE n 1 25 SER n 1 26 CYS n 1 27 ARG n 1 28 ALA n 1 29 SER n 1 30 GLY n 1 31 SER n 1 32 PRO n 1 33 GLU n 1 34 PRO n 1 35 ALA n 1 36 ILE n 1 37 SER n 1 38 TRP n 1 39 PHE n 1 40 ARG n 1 41 ASN n 1 42 GLY n 1 43 LYS n 1 44 LEU n 1 45 ILE n 1 46 GLU n 1 47 GLU n 1 48 ASN n 1 49 GLU n 1 50 LYS n 1 51 TYR n 1 52 ILE n 1 53 LEU n 1 54 LYS n 1 55 GLY n 1 56 SER n 1 57 ASN n 1 58 THR n 1 59 GLU n 1 60 LEU n 1 61 THR n 1 62 VAL n 1 63 ARG n 1 64 ASN n 1 65 ILE n 1 66 ILE n 1 67 ASN n 1 68 SER n 1 69 ASP n 1 70 GLY n 1 71 GLY n 1 72 PRO n 1 73 TYR n 1 74 VAL n 1 75 CYS n 1 76 ARG n 1 77 ALA n 1 78 THR n 1 79 ASN n 1 80 LYS n 1 81 ALA n 1 82 GLY n 1 83 GLU n 1 84 ASP n 1 85 GLU n 1 86 LYS n 1 87 GLN n 1 88 ALA n 1 89 PHE n 1 90 LEU n 1 91 GLN n 1 92 VAL n 1 93 PHE n 1 94 VAL n 1 95 GLN n 1 96 PRO n 1 97 HIS n 1 98 ILE n 1 99 ILE n 1 100 GLN n 1 101 LEU n 1 102 LYS n 1 103 ASN n 1 104 GLU n 1 105 THR n 1 106 THR n 1 107 TYR n 1 108 GLU n 1 109 ASN n 1 110 GLY n 1 111 GLN n 1 112 VAL n 1 113 THR n 1 114 LEU n 1 115 VAL n 1 116 CYS n 1 117 ASP n 1 118 ALA n 1 119 GLU n 1 120 GLY n 1 121 GLU n 1 122 PRO n 1 123 ILE n 1 124 PRO n 1 125 GLU n 1 126 ILE n 1 127 THR n 1 128 TRP n 1 129 LYS n 1 130 ARG n 1 131 ALA n 1 132 VAL n 1 133 ASP n 1 134 GLY n 1 135 PHE n 1 136 THR n 1 137 PHE n 1 138 THR n 1 139 GLU n 1 140 GLY n 1 141 ASP n 1 142 LYS n 1 143 SER n 1 144 LEU n 1 145 ASP n 1 146 GLY n 1 147 ARG n 1 148 ILE n 1 149 GLU n 1 150 VAL n 1 151 LYS n 1 152 GLY n 1 153 GLN n 1 154 HIS n 1 155 GLY n 1 156 SER n 1 157 SER n 1 158 SER n 1 159 LEU n 1 160 HIS n 1 161 ILE n 1 162 LYS n 1 163 ASP n 1 164 VAL n 1 165 LYS n 1 166 LEU n 1 167 SER n 1 168 ASP n 1 169 SER n 1 170 GLY n 1 171 ARG n 1 172 TYR n 1 173 ASP n 1 174 CYS n 1 175 GLU n 1 176 ALA n 1 177 ALA n 1 178 SER n 1 179 ARG n 1 180 ILE n 1 181 GLY n 1 182 GLY n 1 183 HIS n 1 184 GLN n 1 185 LYS n 1 186 SER n 1 187 MET n 1 188 TYR n 1 189 LEU n 1 190 ASP n 1 191 ILE n 1 192 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'PICHIA PASTORIS' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4922 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain KM71H _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector PPICZALFAC _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description RECOMBINANT # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2VA4 1 ? ? 2VA4 ? 2 UNP NCAM2_HUMAN 1 ? ? O15394 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2VA4 A 1 ? 2 ? 2VA4 207 ? 208 ? 207 208 2 2 2VA4 A 3 ? 192 ? O15394 209 ? 398 ? 209 398 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2VA4 LEU A 144 ? UNP O15394 PRO 350 'CONFLICT SEE REMARK 9' 350 1 1 2VA4 ASP A 168 ? UNP O15394 GLY 374 'CONFLICT SEE REMARK 9' 374 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG D-saccharide . N-ACETYL-D-GLUCOSAMINE ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2VA4 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.26 _exptl_crystal.density_percent_sol 45.51 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '25% PEG-6000, 0.1 M HEPES PH7.0.' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2007-03-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8726 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID23-2' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID23-2 _diffrn_source.pdbx_wavelength 0.8726 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2VA4 _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.00 _reflns.d_resolution_high 1.90 _reflns.number_obs 24902 _reflns.number_all ? _reflns.percent_possible_obs 91.9 _reflns.pdbx_Rmerge_I_obs 0.16 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 6.68 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 1.6 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 2.00 _reflns_shell.percent_possible_all 63.0 _reflns_shell.Rmerge_I_obs 0.66 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.99 _reflns_shell.pdbx_redundancy 1.24 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2VA4 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 13110 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20 _refine.ls_d_res_high 1.9 _refine.ls_percent_reflns_obs 91.9 _refine.ls_R_factor_obs 0.2141 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2048 _refine.ls_R_factor_R_free 0.2952 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5 _refine.ls_number_reflns_R_free 655 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1490 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 99 _refine_hist.number_atoms_total 1617 _refine_hist.d_res_high 1.9 _refine_hist.d_res_low 20 # _struct.entry_id 2VA4 _struct.title 'Crystal structure of NCAM2 Ig34' _struct.pdbx_descriptor 'NEURAL CELL ADHESION MOLECULE 2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2VA4 _struct_keywords.pdbx_keywords 'CELL ADHESION' _struct_keywords.text 'TRANSMEMBRANE, PHOSPHORYLATION, IMMUNOGLOBULIN DOMAIN, MEMBRANE, ADHESION, GLYCOPROTEIN, CELL ADHESION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ILE A 66 ? GLY A 70 ? ILE A 272 GLY A 276 5 ? 5 HELX_P HELX_P2 2 LYS A 165 ? SER A 169 ? LYS A 371 SER A 375 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 26 SG ? ? ? 1_555 A CYS 75 SG ? ? A CYS 232 A CYS 281 1_555 ? ? ? ? ? ? ? 2.022 ? disulf2 disulf ? ? A CYS 116 SG ? ? ? 1_555 A CYS 174 SG ? ? A CYS 322 A CYS 380 1_555 ? ? ? ? ? ? ? 2.025 ? covale1 covale ? ? A ASN 13 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 219 A NAG 401 1_555 ? ? ? ? ? ? ? 1.450 ? covale2 covale ? ? A ASN 103 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 309 A NAG 402 1_555 ? ? ? ? ? ? ? 1.450 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 31 A . ? SER 237 A PRO 32 A ? PRO 238 A 1 2.38 2 GLU 121 A . ? GLU 327 A PRO 122 A ? PRO 328 A 1 4.00 3 GLU 139 A . ? GLU 345 A GLY 140 A ? GLY 346 A 1 -5.27 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? AB ? 5 ? AC ? 2 ? AD ? 3 ? AE ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AB 1 2 ? parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel AB 4 5 ? anti-parallel AC 1 2 ? parallel AD 1 2 ? anti-parallel AD 2 3 ? anti-parallel AE 1 2 ? parallel AE 2 3 ? anti-parallel AE 3 4 ? anti-parallel AE 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ALA A 4 ? SER A 6 ? ALA A 210 SER A 212 AA 2 ARG A 27 ? SER A 29 ? ARG A 233 SER A 235 AB 1 SER A 11 ? THR A 15 ? SER A 217 THR A 221 AB 2 GLY A 82 ? LEU A 101 ? GLY A 288 LEU A 307 AB 3 GLY A 71 ? ASN A 79 ? GLY A 277 ASN A 285 AB 4 ALA A 35 ? ARG A 40 ? ALA A 241 ARG A 246 AB 5 LYS A 43 ? LEU A 44 ? LYS A 249 LEU A 250 AC 1 SER A 11 ? THR A 15 ? SER A 217 THR A 221 AC 2 GLY A 82 ? LEU A 101 ? GLY A 288 LEU A 307 AD 1 MET A 22 ? SER A 25 ? MET A 228 SER A 231 AD 2 GLU A 59 ? VAL A 62 ? GLU A 265 VAL A 268 AD 3 TYR A 51 ? LYS A 54 ? TYR A 257 LYS A 260 AE 1 GLU A 104 ? THR A 106 ? GLU A 310 THR A 312 AE 2 GLY A 182 ? ILE A 191 ? GLY A 388 ILE A 397 AE 3 GLY A 170 ? ALA A 177 ? GLY A 376 ALA A 383 AE 4 GLU A 125 ? ARG A 130 ? GLU A 331 ARG A 336 AE 5 PHE A 135 ? PHE A 137 ? PHE A 341 PHE A 343 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N SER A 6 ? N SER A 212 O ARG A 27 ? O ARG A 233 AB 1 2 N PHE A 12 ? N PHE A 218 O PHE A 89 ? O PHE A 295 AB 2 3 N LEU A 90 ? N LEU A 296 O GLY A 71 ? O GLY A 277 AB 3 4 N THR A 78 ? N THR A 284 O ALA A 35 ? O ALA A 241 AB 4 5 N ARG A 40 ? N ARG A 246 O LYS A 43 ? O LYS A 249 AC 1 2 N PHE A 12 ? N PHE A 218 O PHE A 89 ? O PHE A 295 AD 1 2 N PHE A 24 ? N PHE A 230 O LEU A 60 ? O LEU A 266 AD 2 3 N THR A 61 ? N THR A 267 O ILE A 52 ? O ILE A 258 AE 1 2 N GLU A 104 ? N GLU A 310 O TYR A 188 ? O TYR A 394 AE 2 3 N LEU A 189 ? N LEU A 395 O GLY A 170 ? O GLY A 376 AE 3 4 N ALA A 177 ? N ALA A 383 O GLU A 125 ? O GLU A 331 AE 4 5 N ARG A 130 ? N ARG A 336 O PHE A 135 ? O PHE A 341 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE NAG A 401' AC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE NAG A 402' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASN A 13 ? ASN A 219 . ? 1_555 ? 2 AC1 5 GLN A 111 ? GLN A 317 . ? 1_555 ? 3 AC1 5 THR A 113 ? THR A 319 . ? 1_555 ? 4 AC1 5 ARG A 179 ? ARG A 385 . ? 1_555 ? 5 AC1 5 HOH D . ? HOH A 2099 . ? 1_555 ? 6 AC2 2 ASN A 103 ? ASN A 309 . ? 1_555 ? 7 AC2 2 TYR A 188 ? TYR A 394 . ? 1_555 ? # _database_PDB_matrix.entry_id 2VA4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2VA4 _atom_sites.fract_transf_matrix[1][1] 0.022779 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005343 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021834 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022281 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 207 207 SER SER A . n A 1 2 MET 2 208 208 MET MET A . n A 1 3 PRO 3 209 209 PRO PRO A . n A 1 4 ALA 4 210 210 ALA ALA A . n A 1 5 ILE 5 211 211 ILE ILE A . n A 1 6 SER 6 212 212 SER SER A . n A 1 7 MET 7 213 213 MET MET A . n A 1 8 PRO 8 214 214 PRO PRO A . n A 1 9 GLN 9 215 215 GLN GLN A . n A 1 10 LYS 10 216 216 LYS LYS A . n A 1 11 SER 11 217 217 SER SER A . n A 1 12 PHE 12 218 218 PHE PHE A . n A 1 13 ASN 13 219 219 ASN ASN A . n A 1 14 ALA 14 220 220 ALA ALA A . n A 1 15 THR 15 221 221 THR THR A . n A 1 16 ALA 16 222 222 ALA ALA A . n A 1 17 GLU 17 223 223 GLU GLU A . n A 1 18 ARG 18 224 224 ARG ARG A . n A 1 19 GLY 19 225 225 GLY GLY A . n A 1 20 GLU 20 226 226 GLU GLU A . n A 1 21 GLU 21 227 227 GLU GLU A . n A 1 22 MET 22 228 228 MET MET A . n A 1 23 THR 23 229 229 THR THR A . n A 1 24 PHE 24 230 230 PHE PHE A . n A 1 25 SER 25 231 231 SER SER A . n A 1 26 CYS 26 232 232 CYS CYS A . n A 1 27 ARG 27 233 233 ARG ARG A . n A 1 28 ALA 28 234 234 ALA ALA A . n A 1 29 SER 29 235 235 SER SER A . n A 1 30 GLY 30 236 236 GLY GLY A . n A 1 31 SER 31 237 237 SER SER A . n A 1 32 PRO 32 238 238 PRO PRO A . n A 1 33 GLU 33 239 239 GLU GLU A . n A 1 34 PRO 34 240 240 PRO PRO A . n A 1 35 ALA 35 241 241 ALA ALA A . n A 1 36 ILE 36 242 242 ILE ILE A . n A 1 37 SER 37 243 243 SER SER A . n A 1 38 TRP 38 244 244 TRP TRP A . n A 1 39 PHE 39 245 245 PHE PHE A . n A 1 40 ARG 40 246 246 ARG ARG A . n A 1 41 ASN 41 247 247 ASN ASN A . n A 1 42 GLY 42 248 248 GLY GLY A . n A 1 43 LYS 43 249 249 LYS LYS A . n A 1 44 LEU 44 250 250 LEU LEU A . n A 1 45 ILE 45 251 251 ILE ILE A . n A 1 46 GLU 46 252 252 GLU GLU A . n A 1 47 GLU 47 253 253 GLU GLU A . n A 1 48 ASN 48 254 254 ASN ASN A . n A 1 49 GLU 49 255 255 GLU GLU A . n A 1 50 LYS 50 256 256 LYS LYS A . n A 1 51 TYR 51 257 257 TYR TYR A . n A 1 52 ILE 52 258 258 ILE ILE A . n A 1 53 LEU 53 259 259 LEU LEU A . n A 1 54 LYS 54 260 260 LYS LYS A . n A 1 55 GLY 55 261 261 GLY GLY A . n A 1 56 SER 56 262 262 SER SER A . n A 1 57 ASN 57 263 263 ASN ASN A . n A 1 58 THR 58 264 264 THR THR A . n A 1 59 GLU 59 265 265 GLU GLU A . n A 1 60 LEU 60 266 266 LEU LEU A . n A 1 61 THR 61 267 267 THR THR A . n A 1 62 VAL 62 268 268 VAL VAL A . n A 1 63 ARG 63 269 269 ARG ARG A . n A 1 64 ASN 64 270 270 ASN ASN A . n A 1 65 ILE 65 271 271 ILE ILE A . n A 1 66 ILE 66 272 272 ILE ILE A . n A 1 67 ASN 67 273 273 ASN ASN A . n A 1 68 SER 68 274 274 SER SER A . n A 1 69 ASP 69 275 275 ASP ASP A . n A 1 70 GLY 70 276 276 GLY GLY A . n A 1 71 GLY 71 277 277 GLY GLY A . n A 1 72 PRO 72 278 278 PRO PRO A . n A 1 73 TYR 73 279 279 TYR TYR A . n A 1 74 VAL 74 280 280 VAL VAL A . n A 1 75 CYS 75 281 281 CYS CYS A . n A 1 76 ARG 76 282 282 ARG ARG A . n A 1 77 ALA 77 283 283 ALA ALA A . n A 1 78 THR 78 284 284 THR THR A . n A 1 79 ASN 79 285 285 ASN ASN A . n A 1 80 LYS 80 286 286 LYS LYS A . n A 1 81 ALA 81 287 287 ALA ALA A . n A 1 82 GLY 82 288 288 GLY GLY A . n A 1 83 GLU 83 289 289 GLU GLU A . n A 1 84 ASP 84 290 290 ASP ASP A . n A 1 85 GLU 85 291 291 GLU GLU A . n A 1 86 LYS 86 292 292 LYS LYS A . n A 1 87 GLN 87 293 293 GLN GLN A . n A 1 88 ALA 88 294 294 ALA ALA A . n A 1 89 PHE 89 295 295 PHE PHE A . n A 1 90 LEU 90 296 296 LEU LEU A . n A 1 91 GLN 91 297 297 GLN GLN A . n A 1 92 VAL 92 298 298 VAL VAL A . n A 1 93 PHE 93 299 299 PHE PHE A . n A 1 94 VAL 94 300 300 VAL VAL A . n A 1 95 GLN 95 301 301 GLN GLN A . n A 1 96 PRO 96 302 302 PRO PRO A . n A 1 97 HIS 97 303 303 HIS HIS A . n A 1 98 ILE 98 304 304 ILE ILE A . n A 1 99 ILE 99 305 305 ILE ILE A . n A 1 100 GLN 100 306 306 GLN GLN A . n A 1 101 LEU 101 307 307 LEU LEU A . n A 1 102 LYS 102 308 308 LYS LYS A . n A 1 103 ASN 103 309 309 ASN ASN A . n A 1 104 GLU 104 310 310 GLU GLU A . n A 1 105 THR 105 311 311 THR THR A . n A 1 106 THR 106 312 312 THR THR A . n A 1 107 TYR 107 313 313 TYR TYR A . n A 1 108 GLU 108 314 314 GLU GLU A . n A 1 109 ASN 109 315 315 ASN ASN A . n A 1 110 GLY 110 316 316 GLY GLY A . n A 1 111 GLN 111 317 317 GLN GLN A . n A 1 112 VAL 112 318 318 VAL VAL A . n A 1 113 THR 113 319 319 THR THR A . n A 1 114 LEU 114 320 320 LEU LEU A . n A 1 115 VAL 115 321 321 VAL VAL A . n A 1 116 CYS 116 322 322 CYS CYS A . n A 1 117 ASP 117 323 323 ASP ASP A . n A 1 118 ALA 118 324 324 ALA ALA A . n A 1 119 GLU 119 325 325 GLU GLU A . n A 1 120 GLY 120 326 326 GLY GLY A . n A 1 121 GLU 121 327 327 GLU GLU A . n A 1 122 PRO 122 328 328 PRO PRO A . n A 1 123 ILE 123 329 329 ILE ILE A . n A 1 124 PRO 124 330 330 PRO PRO A . n A 1 125 GLU 125 331 331 GLU GLU A . n A 1 126 ILE 126 332 332 ILE ILE A . n A 1 127 THR 127 333 333 THR THR A . n A 1 128 TRP 128 334 334 TRP TRP A . n A 1 129 LYS 129 335 335 LYS LYS A . n A 1 130 ARG 130 336 336 ARG ARG A . n A 1 131 ALA 131 337 337 ALA ALA A . n A 1 132 VAL 132 338 338 VAL VAL A . n A 1 133 ASP 133 339 339 ASP ASP A . n A 1 134 GLY 134 340 340 GLY GLY A . n A 1 135 PHE 135 341 341 PHE PHE A . n A 1 136 THR 136 342 342 THR THR A . n A 1 137 PHE 137 343 343 PHE PHE A . n A 1 138 THR 138 344 344 THR THR A . n A 1 139 GLU 139 345 345 GLU GLU A . n A 1 140 GLY 140 346 346 GLY GLY A . n A 1 141 ASP 141 347 347 ASP ASP A . n A 1 142 LYS 142 348 348 LYS LYS A . n A 1 143 SER 143 349 349 SER SER A . n A 1 144 LEU 144 350 350 LEU LEU A . n A 1 145 ASP 145 351 351 ASP ASP A . n A 1 146 GLY 146 352 352 GLY GLY A . n A 1 147 ARG 147 353 353 ARG ARG A . n A 1 148 ILE 148 354 354 ILE ILE A . n A 1 149 GLU 149 355 355 GLU GLU A . n A 1 150 VAL 150 356 356 VAL VAL A . n A 1 151 LYS 151 357 357 LYS LYS A . n A 1 152 GLY 152 358 358 GLY GLY A . n A 1 153 GLN 153 359 359 GLN GLN A . n A 1 154 HIS 154 360 360 HIS HIS A . n A 1 155 GLY 155 361 361 GLY GLY A . n A 1 156 SER 156 362 362 SER SER A . n A 1 157 SER 157 363 363 SER SER A . n A 1 158 SER 158 364 364 SER SER A . n A 1 159 LEU 159 365 365 LEU LEU A . n A 1 160 HIS 160 366 366 HIS HIS A . n A 1 161 ILE 161 367 367 ILE ILE A . n A 1 162 LYS 162 368 368 LYS LYS A . n A 1 163 ASP 163 369 369 ASP ASP A . n A 1 164 VAL 164 370 370 VAL VAL A . n A 1 165 LYS 165 371 371 LYS LYS A . n A 1 166 LEU 166 372 372 LEU LEU A . n A 1 167 SER 167 373 373 SER SER A . n A 1 168 ASP 168 374 374 ASP ASP A . n A 1 169 SER 169 375 375 SER SER A . n A 1 170 GLY 170 376 376 GLY GLY A . n A 1 171 ARG 171 377 377 ARG ARG A . n A 1 172 TYR 172 378 378 TYR TYR A . n A 1 173 ASP 173 379 379 ASP ASP A . n A 1 174 CYS 174 380 380 CYS CYS A . n A 1 175 GLU 175 381 381 GLU GLU A . n A 1 176 ALA 176 382 382 ALA ALA A . n A 1 177 ALA 177 383 383 ALA ALA A . n A 1 178 SER 178 384 384 SER SER A . n A 1 179 ARG 179 385 385 ARG ARG A . n A 1 180 ILE 180 386 386 ILE ILE A . n A 1 181 GLY 181 387 387 GLY GLY A . n A 1 182 GLY 182 388 388 GLY GLY A . n A 1 183 HIS 183 389 389 HIS HIS A . n A 1 184 GLN 184 390 390 GLN GLN A . n A 1 185 LYS 185 391 391 LYS LYS A . n A 1 186 SER 186 392 392 SER SER A . n A 1 187 MET 187 393 393 MET MET A . n A 1 188 TYR 188 394 394 TYR TYR A . n A 1 189 LEU 189 395 395 LEU LEU A . n A 1 190 ASP 190 396 396 ASP ASP A . n A 1 191 ILE 191 397 397 ILE ILE A . n A 1 192 GLU 192 398 398 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG 1 401 401 NAG NAG A . C 2 NAG 1 402 402 NAG NAG A . D 3 HOH 1 2001 2001 HOH HOH A . D 3 HOH 2 2002 2002 HOH HOH A . D 3 HOH 3 2003 2003 HOH HOH A . D 3 HOH 4 2004 2004 HOH HOH A . D 3 HOH 5 2005 2005 HOH HOH A . D 3 HOH 6 2006 2006 HOH HOH A . D 3 HOH 7 2007 2007 HOH HOH A . D 3 HOH 8 2008 2008 HOH HOH A . D 3 HOH 9 2009 2009 HOH HOH A . D 3 HOH 10 2010 2010 HOH HOH A . D 3 HOH 11 2011 2011 HOH HOH A . D 3 HOH 12 2012 2012 HOH HOH A . D 3 HOH 13 2013 2013 HOH HOH A . D 3 HOH 14 2014 2014 HOH HOH A . D 3 HOH 15 2015 2015 HOH HOH A . D 3 HOH 16 2016 2016 HOH HOH A . D 3 HOH 17 2017 2017 HOH HOH A . D 3 HOH 18 2018 2018 HOH HOH A . D 3 HOH 19 2019 2019 HOH HOH A . D 3 HOH 20 2020 2020 HOH HOH A . D 3 HOH 21 2021 2021 HOH HOH A . D 3 HOH 22 2022 2022 HOH HOH A . D 3 HOH 23 2023 2023 HOH HOH A . D 3 HOH 24 2024 2024 HOH HOH A . D 3 HOH 25 2025 2025 HOH HOH A . D 3 HOH 26 2026 2026 HOH HOH A . D 3 HOH 27 2027 2027 HOH HOH A . D 3 HOH 28 2028 2028 HOH HOH A . D 3 HOH 29 2029 2029 HOH HOH A . D 3 HOH 30 2030 2030 HOH HOH A . D 3 HOH 31 2031 2031 HOH HOH A . D 3 HOH 32 2032 2032 HOH HOH A . D 3 HOH 33 2033 2033 HOH HOH A . D 3 HOH 34 2034 2034 HOH HOH A . D 3 HOH 35 2035 2035 HOH HOH A . D 3 HOH 36 2036 2036 HOH HOH A . D 3 HOH 37 2037 2037 HOH HOH A . D 3 HOH 38 2038 2038 HOH HOH A . D 3 HOH 39 2039 2039 HOH HOH A . D 3 HOH 40 2040 2040 HOH HOH A . D 3 HOH 41 2041 2041 HOH HOH A . D 3 HOH 42 2042 2042 HOH HOH A . D 3 HOH 43 2043 2043 HOH HOH A . D 3 HOH 44 2044 2044 HOH HOH A . D 3 HOH 45 2045 2045 HOH HOH A . D 3 HOH 46 2046 2046 HOH HOH A . D 3 HOH 47 2047 2047 HOH HOH A . D 3 HOH 48 2048 2048 HOH HOH A . D 3 HOH 49 2049 2049 HOH HOH A . D 3 HOH 50 2050 2050 HOH HOH A . D 3 HOH 51 2051 2051 HOH HOH A . D 3 HOH 52 2052 2052 HOH HOH A . D 3 HOH 53 2053 2053 HOH HOH A . D 3 HOH 54 2054 2054 HOH HOH A . D 3 HOH 55 2055 2055 HOH HOH A . D 3 HOH 56 2056 2056 HOH HOH A . D 3 HOH 57 2057 2057 HOH HOH A . D 3 HOH 58 2058 2058 HOH HOH A . D 3 HOH 59 2059 2059 HOH HOH A . D 3 HOH 60 2060 2060 HOH HOH A . D 3 HOH 61 2061 2061 HOH HOH A . D 3 HOH 62 2062 2062 HOH HOH A . D 3 HOH 63 2063 2063 HOH HOH A . D 3 HOH 64 2064 2064 HOH HOH A . D 3 HOH 65 2065 2065 HOH HOH A . D 3 HOH 66 2066 2066 HOH HOH A . D 3 HOH 67 2067 2067 HOH HOH A . D 3 HOH 68 2068 2068 HOH HOH A . D 3 HOH 69 2069 2069 HOH HOH A . D 3 HOH 70 2070 2070 HOH HOH A . D 3 HOH 71 2071 2071 HOH HOH A . D 3 HOH 72 2072 2072 HOH HOH A . D 3 HOH 73 2073 2073 HOH HOH A . D 3 HOH 74 2074 2074 HOH HOH A . D 3 HOH 75 2075 2075 HOH HOH A . D 3 HOH 76 2076 2076 HOH HOH A . D 3 HOH 77 2077 2077 HOH HOH A . D 3 HOH 78 2078 2078 HOH HOH A . D 3 HOH 79 2079 2079 HOH HOH A . D 3 HOH 80 2080 2080 HOH HOH A . D 3 HOH 81 2081 2081 HOH HOH A . D 3 HOH 82 2082 2082 HOH HOH A . D 3 HOH 83 2083 2083 HOH HOH A . D 3 HOH 84 2084 2084 HOH HOH A . D 3 HOH 85 2085 2085 HOH HOH A . D 3 HOH 86 2086 2086 HOH HOH A . D 3 HOH 87 2087 2087 HOH HOH A . D 3 HOH 88 2088 2088 HOH HOH A . D 3 HOH 89 2089 2089 HOH HOH A . D 3 HOH 90 2090 2090 HOH HOH A . D 3 HOH 91 2091 2091 HOH HOH A . D 3 HOH 92 2092 2092 HOH HOH A . D 3 HOH 93 2093 2093 HOH HOH A . D 3 HOH 94 2094 2094 HOH HOH A . D 3 HOH 95 2095 2095 HOH HOH A . D 3 HOH 96 2096 2096 HOH HOH A . D 3 HOH 97 2097 2097 HOH HOH A . D 3 HOH 98 2098 2098 HOH HOH A . D 3 HOH 99 2099 2099 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 13 A ASN 219 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 103 A ASN 309 ? ASN 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-09-23 2 'Structure model' 1 1 2011-02-23 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE)' ? 1 XDS 'data reduction' . ? 2 XDS 'data scaling' . ? 3 PHASER phasing . ? 4 # _pdbx_database_remark.id 700 _pdbx_database_remark.text ; SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, TWO SHEETS ARE DEFINED. ; # _pdbx_entry_details.entry_id 2VA4 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THERE IS A 2 AMINO ACID DIFFERENCE BETWEEN THE PROTEIN SEQUENCE AND DATABASE SEQUENCE. THE SEQUENCE DESCRIBED CORRESPONDS TO THE SEQUENCE OF THE PROTEIN AS ANNOTATED IN THE ENSEMBL DATABASE. ; # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 ND2 A ASN 309 ? ? C2 A NAG 402 ? ? 1.88 2 1 ND2 A ASN 309 ? ? O5 A NAG 402 ? ? 2.06 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 223 ? ? 58.19 11.16 2 1 ASN A 254 ? ? -143.09 -152.94 3 1 THR A 344 ? ? -123.49 -158.93 4 1 GLU A 345 ? ? 41.70 -126.51 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 N-ACETYL-D-GLUCOSAMINE NAG 3 water HOH #