HEADER FLUORESCENT PROTEIN 30-AUG-07 2VAD TITLE MONOMERIC RED FLUORESCENT PROTEIN, DSRED.M1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RED FLUORESCENT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DSRED.M1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DISCOSOMA SP.; SOURCE 3 ORGANISM_COMMON: SEA ANEMONE; SOURCE 4 ORGANISM_TAXID: 86600; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DH10B/PREP4; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE31 KEYWDS DSRED, GFP-LIKE, MONOMERIC, CHROMOPHORE, LUMINESCENCE, PHOTOPROTEIN, KEYWDS 2 FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.E.STRONGIN,B.BEVIS,N.KHUONG,M.E.DOWNING,R.L.STRACK,K.SUNDARAM, AUTHOR 2 B.S.GLICK,R.J.KEENAN REVDAT 6 13-DEC-23 2VAD 1 REMARK REVDAT 5 15-NOV-23 2VAD 1 LINK ATOM REVDAT 4 08-MAY-19 2VAD 1 REMARK LINK REVDAT 3 24-FEB-09 2VAD 1 VERSN REVDAT 2 04-DEC-07 2VAD 1 JRNL REVDAT 1 06-NOV-07 2VAD 0 JRNL AUTH D.E.STRONGIN,B.BEVIS,N.KHUONG,M.E.DOWNING,R.L.STRACK, JRNL AUTH 2 K.SUNDARAM,B.S.GLICK,R.J.KEENAN JRNL TITL STRUCTURAL REARRANGEMENTS NEAR THE CHROMOPHORE INFLUENCE THE JRNL TITL 2 MATURATION SPEED AND BRIGHTNESS OF DSRED VARIANTS. JRNL REF PROTEIN ENG.DES.SEL. V. 20 525 2007 JRNL REFN ISSN 1741-0126 JRNL PMID 17962222 JRNL DOI 10.1093/PROTEIN/GZM046 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 25940 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1386 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.63 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1882 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1780 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.2050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1755 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 139 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.093 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.088 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1867 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1584 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2509 ; 1.693 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3678 ; 3.729 ; 3.006 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 218 ; 6.578 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 86 ;33.874 ;25.465 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 305 ;11.702 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;14.579 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 248 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2053 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 353 ; 0.020 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 288 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1471 ; 0.230 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 877 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 898 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 80 ; 0.136 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.246 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 17 ; 0.306 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.238 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1088 ; 0.898 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1749 ; 1.540 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 779 ; 2.807 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 758 ; 4.087 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 1-3 AND 224-225 ARE DISORDERED AND WERE NOT REMARK 3 MODELED. DISORDERED SURFACE SIDECHAINS WERE MODELED REMARK 3 STEREOCHEMICALLY. REMARK 4 REMARK 4 2VAD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1290033632. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.900 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27397 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 43.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1ZGO REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, PH 7.6, 25% PEG3350, 200 REMARK 280 MM MGCL2, 5 MM ZNSO4, RT, HANGING DROP, VAPOR DIFFUSION, HANGING REMARK 280 DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.44600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.94100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.07550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.94100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.44600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.07550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 ASN A 3 REMARK 465 SER A 224 REMARK 465 GLN A 225 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 65 CA - C - O ANGL. DEV. = -12.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 55 32.19 -90.83 REMARK 500 TYR A 72 46.27 -105.80 REMARK 500 ALA A 141 35.48 -144.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1224 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 75 NE2 REMARK 620 2 HIS A 193 NE2 116.6 REMARK 620 3 CL A1227 CL 105.7 104.8 REMARK 620 4 CL A1228 CL 102.2 116.6 110.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1225 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 78 OD2 REMARK 620 2 HIS A 204 NE2 104.5 REMARK 620 3 HIS A 221 NE2 113.8 100.5 REMARK 620 4 CL A1229 CL 114.7 106.7 114.6 REMARK 620 N 1 2 3 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 11-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 12-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1224 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1225 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1226 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1227 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1231 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VAE RELATED DB: PDB REMARK 900 FAST MATURING RED FLUORESCENT PROTEIN, DSRED. T4 DBREF 2VAD A 1 225 PDB 2VAD 2VAD 1 225 SEQRES 1 A 223 MET ASP ASN THR GLU ASP VAL ILE LYS GLU PHE MET GLN SEQRES 2 A 223 PHE LYS VAL ARG MET GLU GLY SER VAL ASN GLY HIS TYR SEQRES 3 A 223 PHE GLU ILE GLU GLY GLU GLY GLU GLY LYS PRO TYR GLU SEQRES 4 A 223 GLY THR GLN THR ALA LYS LEU GLN VAL THR LYS GLY GLY SEQRES 5 A 223 PRO LEU PRO PHE ALA TRP ASP ILE LEU SER PRO GLN PHE SEQRES 6 A 223 CRQ SER LYS ALA TYR VAL LYS HIS PRO ALA ASP ILE PRO SEQRES 7 A 223 ASP TYR MET LYS LEU SER PHE PRO GLU GLY PHE THR TRP SEQRES 8 A 223 GLU ARG SER MET ASN PHE GLU ASP GLY GLY VAL VAL GLU SEQRES 9 A 223 VAL GLN GLN ASP SER SER LEU GLN ASP GLY THR PHE ILE SEQRES 10 A 223 TYR LYS VAL LYS PHE LYS GLY VAL ASN PHE PRO ALA ASP SEQRES 11 A 223 GLY PRO VAL MET GLN LYS LYS THR ALA GLY TRP GLU PRO SEQRES 12 A 223 SER THR GLU LYS LEU TYR PRO GLN ASP GLY VAL LEU LYS SEQRES 13 A 223 GLY GLU ILE SER HIS ALA LEU LYS LEU LYS ASP GLY GLY SEQRES 14 A 223 HIS TYR THR CYS ASP PHE LYS THR VAL TYR LYS ALA LYS SEQRES 15 A 223 LYS PRO VAL GLN LEU PRO GLY ASN HIS TYR VAL ASP SER SEQRES 16 A 223 LYS LEU ASP ILE THR ASN HIS ASN GLU ASP TYR THR VAL SEQRES 17 A 223 VAL GLU GLN TYR GLU HIS ALA GLU ALA ARG HIS SER GLY SEQRES 18 A 223 SER GLN MODRES 2VAD CRQ A 66 GLN MODRES 2VAD CRQ A 66 TYR MODRES 2VAD CRQ A 66 GLY HET CRQ A 66 48 HET ZN A1224 1 HET ZN A1225 1 HET ZN A1226 1 HET CL A1227 1 HET CL A1228 1 HET CL A1229 1 HET EDO A1230 4 HET EDO A1231 4 HETNAM CRQ [2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY- HETNAM 2 CRQ BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC HETNAM 3 CRQ ACID HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN CRQ CHROMOPHORE (GLN-TYR-GLY) HETSYN EDO ETHYLENE GLYCOL FORMUL 1 CRQ C16 H16 N4 O5 FORMUL 2 ZN 3(ZN 2+) FORMUL 5 CL 3(CL 1-) FORMUL 8 EDO 2(C2 H6 O2) FORMUL 10 HOH *139(H2 O) HELIX 1 1 ALA A 57 LEU A 61 5 5 HELIX 2 2 LEU A 61 PHE A 65 5 5 HELIX 3 3 SER A 69 VAL A 73 5 5 HELIX 4 4 ASP A 81 SER A 86 1 6 SHEET 1 AA30 MET A 12 VAL A 22 0 SHEET 2 AA30 HIS A 25 LYS A 36 -1 O HIS A 25 N VAL A 22 SHEET 3 AA30 THR A 41 LYS A 50 -1 O THR A 41 N LYS A 36 SHEET 4 AA30 VAL A 210 ARG A 220 -1 O VAL A 211 N LEU A 46 SHEET 5 AA30 HIS A 193 HIS A 204 -1 O TYR A 194 N ARG A 220 SHEET 6 AA30 SER A 146 GLN A 153 -1 O SER A 146 N SER A 197 SHEET 7 AA30 VAL A 156 LEU A 167 1 O VAL A 156 N GLN A 153 SHEET 8 AA30 THR A 140 TRP A 143 -1 N ALA A 141 O LYS A 166 SHEET 9 AA30 HIS A 25 LYS A 36 0 SHEET 10 AA30 MET A 12 VAL A 22 -1 O MET A 12 N GLY A 35 SHEET 11 AA30 THR A 41 LYS A 50 0 SHEET 12 AA30 HIS A 25 LYS A 36 -1 O GLU A 28 N THR A 49 SHEET 13 AA30 PHE A 91 PHE A 99 0 SHEET 14 AA30 VAL A 104 GLN A 114 -1 O VAL A 105 N MET A 97 SHEET 15 AA30 VAL A 104 GLN A 114 0 SHEET 16 AA30 PHE A 91 PHE A 99 -1 O PHE A 91 N SER A 111 SHEET 17 AA30 THR A 117 VAL A 127 0 SHEET 18 AA30 MET A 12 VAL A 22 1 O GLN A 13 N PHE A 118 SHEET 19 AA30 THR A 140 TRP A 143 0 SHEET 20 AA30 VAL A 156 LEU A 167 -1 O LYS A 166 N ALA A 141 SHEET 21 AA30 SER A 146 GLN A 153 -1 O LYS A 149 N GLU A 160 SHEET 22 AA30 HIS A 193 HIS A 204 -1 O HIS A 193 N LEU A 150 SHEET 23 AA30 VAL A 156 LEU A 167 0 SHEET 24 AA30 THR A 140 TRP A 143 -1 N ALA A 141 O LYS A 166 SHEET 25 AA30 HIS A 172 ALA A 183 0 SHEET 26 AA30 PHE A 91 PHE A 99 -1 O THR A 92 N LYS A 182 SHEET 27 AA30 HIS A 193 HIS A 204 0 SHEET 28 AA30 SER A 146 GLN A 153 -1 O SER A 146 N SER A 197 SHEET 29 AA30 VAL A 210 ARG A 220 0 SHEET 30 AA30 THR A 41 LYS A 50 -1 O GLN A 42 N GLU A 215 LINK C APHE A 65 N1 ACRQ A 66 1555 1555 1.33 LINK C BPHE A 65 N1 BCRQ A 66 1555 1555 1.31 LINK C3 ACRQ A 66 N SER A 69 1555 1555 1.27 LINK C3 BCRQ A 66 N SER A 69 1555 1555 1.28 LINK NE2 HIS A 75 ZN ZN A1224 1555 1555 2.11 LINK OD2 ASP A 78 ZN ZN A1225 1555 1555 1.99 LINK NE2 HIS A 193 ZN ZN A1224 1555 1555 2.14 LINK NE2 HIS A 204 ZN ZN A1225 3454 1555 2.07 LINK NE2 HIS A 221 ZN ZN A1225 1555 1555 2.05 LINK ZN ZN A1224 CL CL A1227 1555 1555 2.26 LINK ZN ZN A1224 CL CL A1228 1555 1555 2.28 LINK ZN ZN A1225 CL CL A1229 1555 1555 2.25 CISPEP 1 GLY A 52 PRO A 53 0 -7.96 CISPEP 2 PHE A 87 PRO A 88 0 5.97 SITE 1 AC1 4 HIS A 75 HIS A 193 CL A1227 CL A1228 SITE 1 AC2 4 ASP A 78 HIS A 204 HIS A 221 CL A1229 SITE 1 AC3 2 GLU A 144 HIS A 172 SITE 1 AC4 7 HIS A 75 PRO A 80 TYR A 82 LEU A 157 SITE 2 AC4 7 HIS A 193 ZN A1224 HOH A2058 SITE 1 AC5 4 HIS A 75 MET A 83 VAL A 195 ZN A1224 SITE 1 AC6 4 ASP A 78 HIS A 204 HIS A 221 ZN A1225 SITE 1 AC7 5 ASN A 98 PHE A 99 GLU A 100 THR A 174 SITE 2 AC7 5 ASP A 176 SITE 1 AC8 4 GLU A 94 SER A 96 LYS A 178 VAL A 180 CRYST1 38.892 62.151 81.882 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025712 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016090 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012213 0.00000