HEADER TRANSFERASE 31-AUG-07 2VAG TITLE CRYSTAL STRUCTURE OF DI-PHOSPHORYLATED HUMAN CLK1 IN COMPLEX WITH A TITLE 2 NOVEL SUBSTITUTED INDOLE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY PROTEIN KINASE CLK1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN, RESIDUES 148-484; COMPND 5 SYNONYM: CDC-LIKE KINASE 1; COMPND 6 EC: 2.7.12.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PLIC-SGC1 KEYWDS SERINE/THREONINE-PROTEIN KINASE, TYROSINE-PROTEIN KINASE, NUCLEUS, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.C.W.PIKE,A.N.BULLOCK,O.FEDOROV,E.S.PILKA,E.UGOCHUKWU,F.VON DELFT, AUTHOR 2 A.EDWARDS,C.H.ARROWSMITH,J.WEIGELT,M.SUNDSTROM,K.HUBER,F.BRACHER, AUTHOR 3 S.KNAPP REVDAT 7 13-NOV-24 2VAG 1 REMARK REVDAT 6 13-DEC-23 2VAG 1 REMARK LINK REVDAT 5 07-DEC-11 2VAG 1 AUTHOR JRNL REVDAT 4 13-JUL-11 2VAG 1 VERSN REVDAT 3 19-JAN-10 2VAG 1 VERSN REVDAT 2 24-FEB-09 2VAG 1 VERSN REVDAT 1 09-OCT-07 2VAG 0 JRNL AUTH O.FEDOROV,K.HUBER,A.EISENREICH,P.FILIPPAKOPOULOS,O.KING, JRNL AUTH 2 A.N.BULLOCK,D.SZKLARCZYK,L.J.JENSEN,D.FABBRO,J.TRAPPE, JRNL AUTH 3 U.RAUCH,F.BRACHER,S.KNAPP JRNL TITL SPECIFIC CLK INHIBITORS FROM A NOVEL CHEMOTYPE FOR JRNL TITL 2 REGULATION OF ALTERNATIVE SPLICING. JRNL REF CHEM.BIOL V. 18 67 2011 JRNL REFN ISSN 1074-5521 JRNL PMID 21276940 JRNL DOI 10.1016/J.CHEMBIOL.2010.11.009 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0040 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 35072 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1887 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2572 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2638 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 230 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : UNVERIFIED REMARK 3 FROM WILSON PLOT (A**2) : 25.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.32000 REMARK 3 B33 (A**2) : -0.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.116 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.119 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.058 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2735 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1803 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3717 ; 1.404 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4365 ; 1.004 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 330 ; 5.985 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 128 ;32.466 ;23.359 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 441 ;12.718 ;15.034 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;12.886 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 410 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3035 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 577 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 593 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1913 ; 0.187 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1352 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1312 ; 0.096 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 201 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.093 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 32 ; 0.268 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.130 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1700 ; 3.485 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2673 ; 4.651 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1197 ; 7.597 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1044 ; 9.659 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 481 REMARK 3 ORIGIN FOR THE GROUP (A): 14.5270 6.8270 14.9380 REMARK 3 T TENSOR REMARK 3 T11: -0.0179 T22: -0.0879 REMARK 3 T33: -0.1231 T12: 0.0663 REMARK 3 T13: -0.0426 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.7934 L22: 1.5628 REMARK 3 L33: 1.2910 L12: 0.2247 REMARK 3 L13: -0.2626 L23: 0.3152 REMARK 3 S TENSOR REMARK 3 S11: -0.1673 S12: -0.0795 S13: -0.0351 REMARK 3 S21: -0.2754 S22: 0.0597 S23: 0.0512 REMARK 3 S31: -0.2866 S32: -0.0779 S33: 0.1076 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VAG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1290033660. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.006029 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36979 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 33.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.61000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1Z57 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.1M SODIUM MALATE PH7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.47500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.05400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.47500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.05400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -1 REMARK 465 PRO A 307 REMARK 465 LYS A 308 REMARK 465 ILE A 309 REMARK 465 LYS A 482 REMARK 465 SER A 483 REMARK 465 ILE A 484 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 148 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 169 CD OE1 OE2 REMARK 470 LYS A 174 CG CD CE NZ REMARK 470 LYS A 182 CE NZ REMARK 470 GLN A 208 CD OE1 NE2 REMARK 470 GLU A 211 CD OE1 OE2 REMARK 470 LYS A 253 CD CE NZ REMARK 470 LYS A 274 CE NZ REMARK 470 LYS A 283 NZ REMARK 470 GLU A 292 CD OE1 OE2 REMARK 470 GLN A 298 CG CD OE1 NE2 REMARK 470 LYS A 310 CG CD CE NZ REMARK 470 THR A 338 OG1 CG2 REMARK 470 LEU A 339 CG CD1 CD2 REMARK 470 VAL A 340 CG1 CG2 REMARK 470 HIS A 382 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 385 CE NZ REMARK 470 ARG A 393 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 400 CG CD CE NZ REMARK 470 GLN A 404 CG CD OE1 NE2 REMARK 470 LYS A 405 CD CE NZ REMARK 470 ARG A 416 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 421 CG CD OE1 OE2 REMARK 470 ARG A 431 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 437 CD CE NZ REMARK 470 GLU A 448 CD OE1 OE2 REMARK 470 ARG A 469 CZ NH1 NH2 REMARK 470 LYS A 473 CE NZ REMARK 470 LYS A 481 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 160 -42.91 -145.93 REMARK 500 THR A 287 -13.71 82.14 REMARK 500 ARG A 311 -166.12 -125.15 REMARK 500 ASP A 325 85.97 66.18 REMARK 500 SER A 337 109.80 -43.45 REMARK 500 SER A 357 -142.37 -156.92 REMARK 500 HIS A 414 -133.68 56.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE V25 A 1482 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Z57 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN CLK1 IN COMPLEX WITH 10Z-HYMENIALDISINE DBREF 2VAG A 148 484 UNP P49759 CLK1_HUMAN 148 484 SEQADV 2VAG SER A -1 UNP P49759 EXPRESSION TAG SEQADV 2VAG MET A 0 UNP P49759 EXPRESSION TAG SEQADV 2VAG ALA A 432 UNP P49759 ARG 432 CONFLICT SEQRES 1 A 339 SER MET HIS LEU ILE CYS GLN SER GLY ASP VAL LEU SER SEQRES 2 A 339 ALA ARG TYR GLU ILE VAL ASP THR LEU GLY GLU GLY ALA SEQRES 3 A 339 PHE GLY LYS VAL VAL GLU CYS ILE ASP HIS LYS ALA GLY SEQRES 4 A 339 GLY ARG HIS VAL ALA VAL LYS ILE VAL LYS ASN VAL ASP SEQRES 5 A 339 ARG TYR CYS GLU ALA ALA ARG SER GLU ILE GLN VAL LEU SEQRES 6 A 339 GLU HIS LEU ASN THR THR ASP PRO ASN SER THR PHE ARG SEQRES 7 A 339 CYS VAL GLN MET LEU GLU TRP PHE GLU HIS HIS GLY HIS SEQRES 8 A 339 ILE CYS ILE VAL PHE GLU LEU LEU GLY LEU SER THR TYR SEQRES 9 A 339 ASP PHE ILE LYS GLU ASN GLY PHE LEU PRO PHE ARG LEU SEQRES 10 A 339 ASP HIS ILE ARG LYS MET ALA TYR GLN ILE CYS LYS SER SEQRES 11 A 339 VAL ASN PHE LEU HIS SER ASN LYS LEU THR HIS THR ASP SEQRES 12 A 339 LEU LYS PRO GLU ASN ILE LEU PHE VAL GLN SER ASP TYR SEQRES 13 A 339 THR GLU ALA TYR ASN PRO LYS ILE LYS ARG ASP GLU ARG SEQRES 14 A 339 THR LEU ILE ASN PRO ASP ILE LYS VAL VAL ASP PHE GLY SEQRES 15 A 339 SER ALA THR TYR ASP ASP GLU HIS HIS SER THR LEU VAL SEQRES 16 A 339 SEP TPO ARG HIS TYR ARG ALA PRO GLU VAL ILE LEU ALA SEQRES 17 A 339 LEU GLY TRP SER GLN PRO CYS ASP VAL TRP SER ILE GLY SEQRES 18 A 339 CYS ILE LEU ILE GLU TYR TYR LEU GLY PHE THR VAL PHE SEQRES 19 A 339 PRO THR HIS ASP SER LYS GLU HIS LEU ALA MET MET GLU SEQRES 20 A 339 ARG ILE LEU GLY PRO LEU PRO LYS HIS MET ILE GLN LYS SEQRES 21 A 339 THR ARG LYS ARG LYS TYR PHE HIS HIS ASP ARG LEU ASP SEQRES 22 A 339 TRP ASP GLU HIS SER SER ALA GLY ARG TYR VAL SER ARG SEQRES 23 A 339 ALA CYS LYS PRO LEU LYS GLU PHE MET LEU SER GLN ASP SEQRES 24 A 339 VAL GLU HIS GLU ARG LEU PHE ASP LEU ILE GLN LYS MET SEQRES 25 A 339 LEU GLU TYR ASP PRO ALA LYS ARG ILE THR LEU ARG GLU SEQRES 26 A 339 ALA LEU LYS HIS PRO PHE PHE ASP LEU LEU LYS LYS SER SEQRES 27 A 339 ILE MODRES 2VAG SEP A 341 SER PHOSPHOSERINE MODRES 2VAG TPO A 342 THR PHOSPHOTHREONINE HET SEP A 341 10 HET TPO A 342 11 HET V25 A1482 22 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETNAM V25 ETHYL 3-[(E)-2-AMINO-1-CYANOETHENYL]-6,7-DICHLORO-1- HETNAM 2 V25 METHYL-1H-INDOLE-2-CARBOXYLATE HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 SEP C3 H8 N O6 P FORMUL 1 TPO C4 H10 N O6 P FORMUL 2 V25 C15 H13 CL2 N3 O2 FORMUL 3 HOH *230(H2 O) HELIX 1 1 MET A 0 CYS A 151 5 5 HELIX 2 2 VAL A 196 ASP A 217 1 22 HELIX 3 3 SER A 247 ASN A 255 1 9 HELIX 4 4 ARG A 261 ASN A 282 1 22 HELIX 5 5 LYS A 290 GLU A 292 5 3 HELIX 6 6 ALA A 347 LEU A 352 1 6 HELIX 7 7 GLN A 358 GLY A 375 1 18 HELIX 8 8 ASP A 383 GLY A 396 1 14 HELIX 9 9 PRO A 399 THR A 406 1 8 HELIX 10 10 LYS A 408 LYS A 410 5 3 HELIX 11 11 SER A 423 CYS A 433 1 11 HELIX 12 12 PRO A 435 MET A 440 5 6 HELIX 13 13 ASP A 444 LEU A 458 1 15 HELIX 14 14 THR A 467 LEU A 472 1 6 HELIX 15 15 LYS A 473 LYS A 481 5 9 SHEET 1 AA 6 VAL A 156 LEU A 157 0 SHEET 2 AA 6 TYR A 161 GLY A 170 -1 O TYR A 161 N LEU A 157 SHEET 3 AA 6 GLY A 173 ASP A 180 -1 O GLY A 173 N GLY A 170 SHEET 4 AA 6 HIS A 187 VAL A 193 -1 O VAL A 188 N CYS A 178 SHEET 5 AA 6 HIS A 236 GLU A 242 -1 O ILE A 237 N VAL A 193 SHEET 6 AA 6 MET A 227 HIS A 233 -1 N LEU A 228 O VAL A 240 SHEET 1 AB 2 LEU A 284 THR A 285 0 SHEET 2 AB 2 THR A 330 TYR A 331 -1 O THR A 330 N THR A 285 SHEET 1 AC 2 ILE A 294 PHE A 296 0 SHEET 2 AC 2 ILE A 321 VAL A 323 -1 O LYS A 322 N LEU A 295 SHEET 1 AD 2 TYR A 301 TYR A 305 0 SHEET 2 AD 2 ASP A 312 LEU A 316 -1 O GLU A 313 N ALA A 304 SHEET 1 AE 2 PHE A 412 HIS A 413 0 SHEET 2 AE 2 ARG A 416 LEU A 417 -1 O ARG A 416 N HIS A 413 LINK C VAL A 340 N SEP A 341 1555 1555 1.32 LINK C SEP A 341 N TPO A 342 1555 1555 1.34 LINK C TPO A 342 N ARG A 343 1555 1555 1.33 SITE 1 AC1 12 LEU A 167 GLY A 168 GLU A 169 VAL A 175 SITE 2 AC1 12 ALA A 189 LYS A 191 PHE A 241 GLU A 242 SITE 3 AC1 12 GLU A 292 ASN A 293 LEU A 295 VAL A 324 CRYST1 90.950 64.108 78.894 90.00 118.17 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010995 0.000000 0.005888 0.00000 SCALE2 0.000000 0.015599 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014378 0.00000