data_2VAL # _entry.id 2VAL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.315 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2VAL PDBE EBI-33657 WWPDB D_1290033657 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2VAL _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2007-09-03 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Forster, C.' 1 'Brauer, A.B.E.' 2 'Perbandt, M.' 3 'Lehmann, D.' 4 'Furste, J.P.' 5 'Betzel, C.' 6 'Erdmann, V.A.' 7 # _citation.id primary _citation.title 'Crystal Structure of an Escherichia Coli Trnagly Microhelix at 2.0 Angstrom Resolution' _citation.journal_abbrev Biochem.Biophys.Res.Commun. _citation.journal_volume 363 _citation.page_first 621 _citation.page_last ? _citation.year 2007 _citation.journal_id_ASTM BBRCA9 _citation.country US _citation.journal_id_ISSN 0006-291X _citation.journal_id_CSD 0146 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17888869 _citation.pdbx_database_id_DOI 10.1016/J.BBRC.2007.09.008 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Forster, C.' 1 ? primary 'Brauer, A.B.E.' 2 ? primary 'Perbandt, M.' 3 ? primary 'Lehmann, D.' 4 ? primary 'Furste, J.P.' 5 ? primary 'Betzel, C.' 6 ? primary 'Erdmann, V.A.' 7 ? # _cell.entry_id 2VAL _cell.length_a 35.348 _cell.length_b 35.348 _cell.length_c 130.821 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VAL _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*GP*CP*GP*GP*GP*AP*AP)-3'" 2299.459 2 ? ? ? ? 2 polymer syn "5'-R(*UP*UP*CP*CP*CP*GP*CP)-3'" 2133.307 2 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 water nat water 18.015 56 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'E.COLI TRNAGLY MICROHELIX' 2 'E.COLI TRNAGLY MICROHELIX' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GCGGGAA GCGGGAA A,B ? 2 polyribonucleotide no no UUCCCGC UUCCCGC C,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 G n 1 4 G n 1 5 G n 1 6 A n 1 7 A n 2 1 U n 2 2 U n 2 3 C n 2 4 C n 2 5 C n 2 6 G n 2 7 C n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? 'ESCHERICHIA COLI' ? 562 ? 2 1 sample ? ? 'ESCHERICHIA COLI' ? 562 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2VAL 1 ? ? 2VAL ? 2 PDB 2VAL 2 ? ? 2VAL ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2VAL A 1 ? 7 ? 2VAL 1 ? 7 ? 1 7 2 1 2VAL B 1 ? 7 ? 2VAL 1 ? 7 ? 1 7 3 2 2VAL C 1 ? 7 ? 2VAL 66 ? 72 ? 66 72 4 2 2VAL D 1 ? 7 ? 2VAL 66 ? 72 ? 66 72 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 2VAL _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.68 _exptl_crystal.density_percent_sol 65 _exptl_crystal.description NONE _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '50 MM SODIUM CACODYLATE, PH 6.0, 10 MM SPERMINE, 10 MM MAGNESIUM SULFATE, 2.0 M AMMONIUM SULFATE, 0.5 MM RNA, ROOM TEMPERATUE.' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.80630 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X13' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X13 _diffrn_source.pdbx_wavelength 0.80630 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2VAL _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.00 _reflns.d_resolution_high 2.00 _reflns.number_obs 6908 _reflns.number_all ? _reflns.percent_possible_obs 99.1 _reflns.pdbx_Rmerge_I_obs 0.079 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 34.00 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9.4 _reflns.pdbx_CC_half ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.03 _reflns_shell.percent_possible_all 83.4 _reflns_shell.Rmerge_I_obs 0.293 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.80 _reflns_shell.pdbx_redundancy 4.1 _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2VAL _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 9123 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 17.67 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 99.1 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.241 _refine.ls_R_factor_R_free 0.318 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 586 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 56 _refine_hist.number_atoms_total 643 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 17.67 # _struct.entry_id 2VAL _struct.title 'Crystal structure of an Escherichia coli tRNAGly microhelix at 2.0 Angstrom resolution' _struct.pdbx_descriptor "5'-R(*GP*CP*GP*GP*GP*AP*A)-3'" _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2VAL _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA, GLYCYL-TRNA SYNTHETASE (GLYRS) SYSTEM, TRNAGLY ACCEPTOR STEM MICROHELIX, RNA TRNA IDENTITY ELEMENTS, MAGNESIUM BINDING SITES' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 C C 7 N3 ? ? A G 1 C C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 C C 7 O2 ? ? A G 1 C C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 C C 7 N4 ? ? A G 1 C C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 C G 6 N1 ? ? A C 2 C G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 C G 6 O6 ? ? A C 2 C G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 C G 6 N2 ? ? A C 2 C G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 C C 5 N3 ? ? A G 3 C C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 C C 5 O2 ? ? A G 3 C C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 C C 5 N4 ? ? A G 3 C C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 C C 4 N3 ? ? A G 4 C C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A G 4 N2 ? ? ? 1_555 C C 4 O2 ? ? A G 4 C C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A G 4 O6 ? ? ? 1_555 C C 4 N4 ? ? A G 4 C C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A G 5 N1 ? ? ? 1_555 C C 3 N3 ? ? A G 5 C C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A G 5 N2 ? ? ? 1_555 C C 3 O2 ? ? A G 5 C C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A G 5 O6 ? ? ? 1_555 C C 3 N4 ? ? A G 5 C C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A A 6 N1 ? ? ? 1_555 C U 2 N3 ? ? A A 6 C U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A A 6 N6 ? ? ? 1_555 C U 2 O4 ? ? A A 6 C U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A A 7 N1 ? ? ? 1_555 C U 1 N3 ? ? A A 7 C U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A A 7 N6 ? ? ? 1_555 C U 1 O4 ? ? A A 7 C U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? B G 1 N1 ? ? ? 1_555 D C 7 N3 ? ? B G 1 D C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? B G 1 N2 ? ? ? 1_555 D C 7 O2 ? ? B G 1 D C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? B G 1 O6 ? ? ? 1_555 D C 7 N4 ? ? B G 1 D C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? B C 2 N3 ? ? ? 1_555 D G 6 N1 ? ? B C 2 D G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? B C 2 N4 ? ? ? 1_555 D G 6 O6 ? ? B C 2 D G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? B C 2 O2 ? ? ? 1_555 D G 6 N2 ? ? B C 2 D G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? B G 3 N1 ? ? ? 1_555 D C 5 N3 ? ? B G 3 D C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? B G 3 N2 ? ? ? 1_555 D C 5 O2 ? ? B G 3 D C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? B G 3 O6 ? ? ? 1_555 D C 5 N4 ? ? B G 3 D C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? B G 4 N1 ? ? ? 1_555 D C 4 N3 ? ? B G 4 D C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? B G 4 N2 ? ? ? 1_555 D C 4 O2 ? ? B G 4 D C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? B G 4 O6 ? ? ? 1_555 D C 4 N4 ? ? B G 4 D C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? B G 5 N1 ? ? ? 1_555 D C 3 N3 ? ? B G 5 D C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? B G 5 N2 ? ? ? 1_555 D C 3 O2 ? ? B G 5 D C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? B G 5 O6 ? ? ? 1_555 D C 3 N4 ? ? B G 5 D C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? B A 6 N1 ? ? ? 1_555 D U 2 N3 ? ? B A 6 D U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? B A 6 N6 ? ? ? 1_555 D U 2 O4 ? ? B A 6 D U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog37 hydrog ? ? B A 7 N1 ? ? ? 1_555 D U 1 N3 ? ? B A 7 D U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog38 hydrog ? ? B A 7 N6 ? ? ? 1_555 D U 1 O4 ? ? B A 7 D U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 2VAL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2VAL _atom_sites.fract_transf_matrix[1][1] 0.028290 _atom_sites.fract_transf_matrix[1][2] 0.016333 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.032667 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007644 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 G 3 3 3 G G A . n A 1 4 G 4 4 4 G G A . n A 1 5 G 5 5 5 G G A . n A 1 6 A 6 6 6 A A A . n A 1 7 A 7 7 7 A A A . n B 1 1 G 1 1 1 G G B . n B 1 2 C 2 2 2 C C B . n B 1 3 G 3 3 3 G G B . n B 1 4 G 4 4 4 G G B . n B 1 5 G 5 5 5 G G B . n B 1 6 A 6 6 6 A A B . n B 1 7 A 7 7 7 A A B . n C 2 1 U 1 66 66 U U C . n C 2 2 U 2 67 67 U U C . n C 2 3 C 3 68 68 C C C . n C 2 4 C 4 69 69 C C C . n C 2 5 C 5 70 70 C C C . n C 2 6 G 6 71 71 G G C . n C 2 7 C 7 72 72 C C C . n D 2 1 U 1 66 66 U U D . n D 2 2 U 2 67 67 U U D . n D 2 3 C 3 68 68 C C D . n D 2 4 C 4 69 69 C C D . n D 2 5 C 5 70 70 C C D . n D 2 6 G 6 71 71 G G D . n D 2 7 C 7 72 72 C C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG 1 1073 1073 MG MG C . F 4 HOH 1 2001 2001 HOH HOH A . F 4 HOH 2 2002 2002 HOH HOH A . F 4 HOH 3 2003 2003 HOH HOH A . F 4 HOH 4 2004 2004 HOH HOH A . F 4 HOH 5 2005 2005 HOH HOH A . F 4 HOH 6 2006 2006 HOH HOH A . F 4 HOH 7 2007 2007 HOH HOH A . F 4 HOH 8 2008 2008 HOH HOH A . F 4 HOH 9 2009 2009 HOH HOH A . F 4 HOH 10 2010 2010 HOH HOH A . F 4 HOH 11 2011 2011 HOH HOH A . F 4 HOH 12 2012 2012 HOH HOH A . G 4 HOH 1 2001 2001 HOH HOH B . G 4 HOH 2 2002 2002 HOH HOH B . G 4 HOH 3 2003 2003 HOH HOH B . G 4 HOH 4 2004 2004 HOH HOH B . G 4 HOH 5 2005 2005 HOH HOH B . G 4 HOH 6 2006 2006 HOH HOH B . G 4 HOH 7 2007 2007 HOH HOH B . G 4 HOH 8 2008 2008 HOH HOH B . G 4 HOH 9 2009 2009 HOH HOH B . G 4 HOH 10 2010 2010 HOH HOH B . G 4 HOH 11 2011 2011 HOH HOH B . G 4 HOH 12 2012 2012 HOH HOH B . G 4 HOH 13 2013 2013 HOH HOH B . G 4 HOH 14 2014 2014 HOH HOH B . G 4 HOH 15 2015 2015 HOH HOH B . H 4 HOH 1 2001 2001 HOH HOH C . H 4 HOH 2 2002 2002 HOH HOH C . H 4 HOH 3 2003 2003 HOH HOH C . H 4 HOH 4 2004 2004 HOH HOH C . H 4 HOH 5 2005 2005 HOH HOH C . H 4 HOH 6 2006 2006 HOH HOH C . H 4 HOH 7 2007 2007 HOH HOH C . H 4 HOH 8 2008 2008 HOH HOH C . H 4 HOH 9 2009 2009 HOH HOH C . H 4 HOH 10 2010 2010 HOH HOH C . H 4 HOH 11 2011 2011 HOH HOH C . H 4 HOH 12 2012 2012 HOH HOH C . H 4 HOH 13 2013 2013 HOH HOH C . H 4 HOH 14 2014 2014 HOH HOH C . H 4 HOH 15 2015 2015 HOH HOH C . H 4 HOH 16 2016 2016 HOH HOH C . H 4 HOH 17 2017 2017 HOH HOH C . H 4 HOH 18 2018 2018 HOH HOH C . I 4 HOH 1 2001 2001 HOH HOH D . I 4 HOH 2 2002 2002 HOH HOH D . I 4 HOH 3 2003 2003 HOH HOH D . I 4 HOH 4 2004 2004 HOH HOH D . I 4 HOH 5 2005 2005 HOH HOH D . I 4 HOH 6 2006 2006 HOH HOH D . I 4 HOH 7 2007 2007 HOH HOH D . I 4 HOH 8 2008 2008 HOH HOH D . I 4 HOH 9 2009 2009 HOH HOH D . I 4 HOH 10 2010 2010 HOH HOH D . I 4 HOH 11 2011 2011 HOH HOH D . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PQS dimeric 2 2 author_and_software_defined_assembly PQS dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E,F,H 2 1 B,D,G,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 960 ? 1 MORE 0.0 ? 1 'SSA (A^2)' 3370 ? 2 'ABSA (A^2)' 890 ? 2 MORE 0.0 ? 2 'SSA (A^2)' 3310 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 2010 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id G _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-16 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2019-10-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' diffrn_source 2 5 'Structure model' pdbx_database_status 3 5 'Structure model' reflns 4 5 'Structure model' reflns_shell # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 2 5 'Structure model' '_pdbx_database_status.status_code_sf' 3 5 'Structure model' '_reflns.pdbx_Rmerge_I_obs' 4 5 'Structure model' '_reflns_shell.Rmerge_I_obs' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language REFMAC refinement 5.0 ? 1 ? ? ? ? PHASER phasing . ? 2 ? ? ? ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C6 A G 1 ? ? N1 A G 1 ? ? 1.346 1.391 -0.045 0.007 N 2 1 N7 A G 1 ? ? C8 A G 1 ? ? 1.368 1.305 0.063 0.006 N 3 1 "C2'" A C 2 ? ? "C1'" A C 2 ? ? 1.476 1.526 -0.050 0.008 N 4 1 C4 A C 2 ? ? C5 A C 2 ? ? 1.478 1.425 0.053 0.008 N 5 1 C5 A C 2 ? ? C6 A C 2 ? ? 1.394 1.339 0.055 0.008 N 6 1 "O4'" A G 3 ? ? "C1'" A G 3 ? ? 1.498 1.415 0.083 0.012 N 7 1 C2 A G 3 ? ? N3 A G 3 ? ? 1.443 1.323 0.120 0.008 N 8 1 C5 A G 3 ? ? C6 A G 3 ? ? 1.319 1.419 -0.100 0.010 N 9 1 C6 A G 3 ? ? N1 A G 3 ? ? 1.458 1.391 0.067 0.007 N 10 1 C5 A G 3 ? ? N7 A G 3 ? ? 1.451 1.388 0.063 0.006 N 11 1 "O4'" A G 4 ? ? "C1'" A G 4 ? ? 1.525 1.415 0.110 0.012 N 12 1 "C2'" A G 4 ? ? "O2'" A G 4 ? ? 1.313 1.412 -0.099 0.013 N 13 1 C4 A G 4 ? ? C5 A G 4 ? ? 1.335 1.379 -0.044 0.007 N 14 1 N9 A G 4 ? ? C4 A G 4 ? ? 1.427 1.375 0.052 0.008 N 15 1 P A G 5 ? ? "O5'" A G 5 ? ? 1.700 1.593 0.107 0.010 N 16 1 "O3'" A G 5 ? ? "C3'" A G 5 ? ? 1.322 1.417 -0.095 0.014 N 17 1 N1 A G 5 ? ? C2 A G 5 ? ? 1.427 1.373 0.054 0.008 N 18 1 C6 A G 5 ? ? N1 A G 5 ? ? 1.441 1.391 0.050 0.007 N 19 1 "O5'" A A 6 ? ? "C5'" A A 6 ? ? 1.318 1.420 -0.102 0.009 N 20 1 "C5'" A A 6 ? ? "C4'" A A 6 ? ? 1.609 1.509 0.100 0.012 N 21 1 "O3'" A A 6 ? ? "C3'" A A 6 ? ? 1.506 1.427 0.079 0.012 N 22 1 C2 A A 6 ? ? N3 A A 6 ? ? 1.269 1.331 -0.062 0.009 N 23 1 N3 A A 6 ? ? C4 A A 6 ? ? 1.466 1.344 0.122 0.006 N 24 1 C6 A A 6 ? ? N1 A A 6 ? ? 1.398 1.351 0.047 0.007 N 25 1 C5 A A 6 ? ? N7 A A 6 ? ? 1.447 1.388 0.059 0.006 N 26 1 C6 A A 6 ? ? N6 A A 6 ? ? 1.388 1.335 0.053 0.008 N 27 1 "C2'" A A 7 ? ? "C1'" A A 7 ? ? 1.614 1.529 0.085 0.011 N 28 1 "O4'" A A 7 ? ? "C1'" A A 7 ? ? 1.493 1.415 0.078 0.012 N 29 1 "C1'" A A 7 ? ? N9 A A 7 ? ? 1.575 1.483 0.092 0.015 N 30 1 C5 A A 7 ? ? C6 A A 7 ? ? 1.489 1.406 0.083 0.009 N 31 1 C5 A A 7 ? ? N7 A A 7 ? ? 1.429 1.388 0.041 0.006 N 32 1 N7 A A 7 ? ? C8 A A 7 ? ? 1.396 1.311 0.085 0.007 N 33 1 C8 A A 7 ? ? N9 A A 7 ? ? 1.424 1.373 0.051 0.008 N 34 1 N9 A A 7 ? ? C4 A A 7 ? ? 1.423 1.374 0.049 0.006 N 35 1 C6 A A 7 ? ? N6 A A 7 ? ? 1.429 1.335 0.094 0.008 N 36 1 C2 B G 1 ? ? N3 B G 1 ? ? 1.375 1.323 0.052 0.008 N 37 1 "O3'" B C 2 ? ? "C3'" B C 2 ? ? 1.542 1.427 0.115 0.012 N 38 1 C2 B G 3 ? ? N3 B G 3 ? ? 1.400 1.323 0.077 0.008 N 39 1 C5 B G 3 ? ? C6 B G 3 ? ? 1.352 1.419 -0.067 0.010 N 40 1 C6 B G 3 ? ? N1 B G 3 ? ? 1.494 1.391 0.103 0.007 N 41 1 C5 B G 3 ? ? N7 B G 3 ? ? 1.434 1.388 0.046 0.006 N 42 1 N9 B G 3 ? ? C4 B G 3 ? ? 1.425 1.375 0.050 0.008 N 43 1 "C5'" B G 4 ? ? "C4'" B G 4 ? ? 1.454 1.508 -0.054 0.007 N 44 1 "O4'" B G 4 ? ? "C1'" B G 4 ? ? 1.507 1.415 0.092 0.012 N 45 1 N1 B G 4 ? ? C2 B G 4 ? ? 1.423 1.373 0.050 0.008 N 46 1 C5 B G 4 ? ? C6 B G 4 ? ? 1.308 1.419 -0.111 0.010 N 47 1 C6 B G 4 ? ? N1 B G 4 ? ? 1.471 1.391 0.080 0.007 N 48 1 C5 B G 4 ? ? N7 B G 4 ? ? 1.435 1.388 0.047 0.006 N 49 1 C2 B G 4 ? ? N2 B G 4 ? ? 1.415 1.341 0.074 0.010 N 50 1 "O3'" B G 4 ? ? P B G 5 ? ? 1.502 1.607 -0.105 0.012 Y 51 1 C2 B G 5 ? ? N3 B G 5 ? ? 1.460 1.323 0.137 0.008 N 52 1 C6 B G 5 ? ? N1 B G 5 ? ? 1.514 1.391 0.123 0.007 N 53 1 C5 B G 5 ? ? N7 B G 5 ? ? 1.441 1.388 0.053 0.006 N 54 1 N9 B G 5 ? ? C4 B G 5 ? ? 1.449 1.375 0.074 0.008 N 55 1 C2 B G 5 ? ? N2 B G 5 ? ? 1.409 1.341 0.068 0.010 N 56 1 "O3'" B G 5 ? ? P B A 6 ? ? 1.712 1.607 0.105 0.012 Y 57 1 "O3'" B A 6 ? ? "C3'" B A 6 ? ? 1.515 1.427 0.088 0.012 N 58 1 C6 B A 6 ? ? N1 B A 6 ? ? 1.395 1.351 0.044 0.007 N 59 1 C8 B A 6 ? ? N9 B A 6 ? ? 1.316 1.373 -0.057 0.008 N 60 1 "O3'" B A 6 ? ? P B A 7 ? ? 1.719 1.607 0.112 0.012 Y 61 1 "O3'" B A 7 ? ? "C3'" B A 7 ? ? 1.555 1.427 0.128 0.012 N 62 1 N3 B A 7 ? ? C4 B A 7 ? ? 1.421 1.344 0.077 0.006 N 63 1 C5 B A 7 ? ? C6 B A 7 ? ? 1.467 1.406 0.061 0.009 N 64 1 N7 B A 7 ? ? C8 B A 7 ? ? 1.391 1.311 0.080 0.007 N 65 1 C6 B A 7 ? ? N6 B A 7 ? ? 1.454 1.335 0.119 0.008 N 66 1 "C1'" C C 68 ? ? N1 C C 68 ? ? 1.600 1.483 0.117 0.015 N 67 1 C4 C C 68 ? ? N4 C C 68 ? ? 1.403 1.335 0.068 0.009 N 68 1 "O3'" C C 69 ? ? "C3'" C C 69 ? ? 1.505 1.427 0.078 0.012 N 69 1 N3 C C 69 ? ? C4 C C 69 ? ? 1.247 1.335 -0.088 0.007 N 70 1 "O5'" C C 70 ? ? "C5'" C C 70 ? ? 1.346 1.420 -0.074 0.009 N 71 1 "C1'" C C 70 ? ? N1 C C 70 ? ? 1.582 1.483 0.099 0.015 N 72 1 C4 C C 70 ? ? C5 C C 70 ? ? 1.473 1.425 0.048 0.008 N 73 1 P C G 71 ? ? "O5'" C G 71 ? ? 1.663 1.593 0.070 0.010 N 74 1 N1 C G 71 ? ? C2 C G 71 ? ? 1.301 1.373 -0.072 0.008 N 75 1 C4 C G 71 ? ? C5 C G 71 ? ? 1.335 1.379 -0.044 0.007 N 76 1 P C C 72 ? ? "O5'" C C 72 ? ? 1.655 1.593 0.062 0.010 N 77 1 "O3'" C C 72 ? ? "C3'" C C 72 ? ? 1.527 1.427 0.100 0.012 N 78 1 C2 C C 72 ? ? N3 C C 72 ? ? 1.293 1.353 -0.060 0.008 N 79 1 C5 C C 72 ? ? C6 C C 72 ? ? 1.286 1.339 -0.053 0.008 N 80 1 "O3'" D U 66 ? ? "C3'" D U 66 ? ? 1.291 1.417 -0.126 0.014 N 81 1 N1 D U 66 ? ? C2 D U 66 ? ? 1.295 1.381 -0.086 0.009 N 82 1 C2 D U 66 ? ? N3 D U 66 ? ? 1.299 1.373 -0.074 0.007 N 83 1 "C1'" D U 67 ? ? N1 D U 67 ? ? 1.616 1.483 0.133 0.015 N 84 1 C2 D U 67 ? ? O2 D U 67 ? ? 1.290 1.219 0.071 0.009 N 85 1 C2 D U 67 ? ? N3 D U 67 ? ? 1.417 1.373 0.044 0.007 N 86 1 P D C 68 ? ? "O5'" D C 68 ? ? 1.493 1.593 -0.100 0.010 N 87 1 C4 D C 68 ? ? N4 D C 68 ? ? 1.423 1.335 0.088 0.009 N 88 1 P D C 69 ? ? "O5'" D C 69 ? ? 1.662 1.593 0.069 0.010 N 89 1 N1 D C 69 ? ? C6 D C 69 ? ? 1.419 1.367 0.052 0.006 N 90 1 N1 D C 70 ? ? C6 D C 70 ? ? 1.416 1.367 0.049 0.006 N 91 1 C4 D C 70 ? ? C5 D C 70 ? ? 1.479 1.425 0.054 0.008 N 92 1 P D G 71 ? ? "O5'" D G 71 ? ? 1.667 1.593 0.074 0.010 N 93 1 "C5'" D G 71 ? ? "C4'" D G 71 ? ? 1.593 1.509 0.084 0.012 N 94 1 "C4'" D G 71 ? ? "C3'" D G 71 ? ? 1.423 1.521 -0.098 0.010 N 95 1 "O3'" D G 71 ? ? "C3'" D G 71 ? ? 1.526 1.427 0.099 0.012 N 96 1 C4 D G 71 ? ? C5 D G 71 ? ? 1.425 1.379 0.046 0.007 N 97 1 C8 D G 71 ? ? N9 D G 71 ? ? 1.443 1.374 0.069 0.007 N 98 1 P D C 72 ? ? "O5'" D C 72 ? ? 1.694 1.593 0.101 0.010 N 99 1 C4 D C 72 ? ? N4 D C 72 ? ? 1.393 1.335 0.058 0.009 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C4'" A G 1 ? ? "C3'" A G 1 ? ? "C2'" A G 1 ? ? 91.44 102.60 -11.16 1.00 N 2 1 "O4'" A G 1 ? ? "C1'" A G 1 ? ? N9 A G 1 ? ? 100.95 108.20 -7.25 0.80 N 3 1 N1 A G 1 ? ? C2 A G 1 ? ? N2 A G 1 ? ? 110.19 116.20 -6.01 0.90 N 4 1 N3 A G 1 ? ? C2 A G 1 ? ? N2 A G 1 ? ? 127.19 119.90 7.29 0.70 N 5 1 N1 A G 1 ? ? C6 A G 1 ? ? O6 A G 1 ? ? 116.28 119.90 -3.62 0.60 N 6 1 "C3'" A G 1 ? ? "O3'" A G 1 ? ? P A C 2 ? ? 130.54 119.70 10.84 1.20 Y 7 1 "O5'" A C 2 ? ? "C5'" A C 2 ? ? "C4'" A C 2 ? ? 99.68 109.40 -9.72 0.80 N 8 1 "O4'" A C 2 ? ? "C4'" A C 2 ? ? "C3'" A C 2 ? ? 93.96 104.00 -10.04 1.00 N 9 1 "C1'" A C 2 ? ? "O4'" A C 2 ? ? "C4'" A C 2 ? ? 104.03 109.70 -5.67 0.70 N 10 1 "C4'" A C 2 ? ? "C3'" A C 2 ? ? "C2'" A C 2 ? ? 95.43 102.60 -7.17 1.00 N 11 1 "O3'" A C 2 ? ? P A G 3 ? ? OP2 A G 3 ? ? 119.41 110.50 8.91 1.10 Y 12 1 "O5'" A G 3 ? ? P A G 3 ? ? OP1 A G 3 ? ? 99.48 105.70 -6.22 0.90 N 13 1 P A G 3 ? ? "O5'" A G 3 ? ? "C5'" A G 3 ? ? 107.99 120.90 -12.91 1.60 N 14 1 "O4'" A G 3 ? ? "C1'" A G 3 ? ? N9 A G 3 ? ? 101.20 108.20 -7.00 0.80 N 15 1 C2 A G 3 ? ? N3 A G 3 ? ? C4 A G 3 ? ? 106.91 111.90 -4.99 0.50 N 16 1 N3 A G 3 ? ? C4 A G 3 ? ? C5 A G 3 ? ? 134.62 128.60 6.02 0.50 N 17 1 C5 A G 3 ? ? C6 A G 3 ? ? N1 A G 3 ? ? 116.68 111.50 5.18 0.50 N 18 1 C4 A G 3 ? ? C5 A G 3 ? ? N7 A G 3 ? ? 115.24 110.80 4.44 0.40 N 19 1 C5 A G 3 ? ? N7 A G 3 ? ? C8 A G 3 ? ? 100.69 104.30 -3.61 0.50 N 20 1 C8 A G 3 ? ? N9 A G 3 ? ? C4 A G 3 ? ? 109.54 106.40 3.14 0.40 N 21 1 N9 A G 3 ? ? C4 A G 3 ? ? C5 A G 3 ? ? 100.79 105.40 -4.61 0.40 N 22 1 N1 A G 3 ? ? C6 A G 3 ? ? O6 A G 3 ? ? 136.98 119.90 17.08 0.60 N 23 1 C5 A G 3 ? ? C6 A G 3 ? ? O6 A G 3 ? ? 106.29 128.60 -22.31 0.60 N 24 1 OP1 A G 4 ? ? P A G 4 ? ? OP2 A G 4 ? ? 129.55 119.60 9.95 1.50 N 25 1 "O5'" A G 4 ? ? P A G 4 ? ? OP1 A G 4 ? ? 97.40 105.70 -8.30 0.90 N 26 1 "O5'" A G 4 ? ? "C5'" A G 4 ? ? "C4'" A G 4 ? ? 103.99 109.40 -5.41 0.80 N 27 1 "O4'" A G 4 ? ? "C1'" A G 4 ? ? N9 A G 4 ? ? 100.45 108.20 -7.75 0.80 N 28 1 C2 A G 4 ? ? N3 A G 4 ? ? C4 A G 4 ? ? 107.34 111.90 -4.56 0.50 N 29 1 N3 A G 4 ? ? C4 A G 4 ? ? C5 A G 4 ? ? 135.05 128.60 6.45 0.50 N 30 1 N7 A G 4 ? ? C8 A G 4 ? ? N9 A G 4 ? ? 109.17 113.10 -3.93 0.50 N 31 1 C8 A G 4 ? ? N9 A G 4 ? ? C4 A G 4 ? ? 108.90 106.40 2.50 0.40 N 32 1 N3 A G 4 ? ? C4 A G 4 ? ? N9 A G 4 ? ? 120.86 126.00 -5.14 0.60 N 33 1 C4 A G 4 ? ? N9 A G 4 ? ? "C1'" A G 4 ? ? 118.08 126.50 -8.42 1.30 N 34 1 OP1 A G 5 ? ? P A G 5 ? ? OP2 A G 5 ? ? 138.32 119.60 18.72 1.50 N 35 1 C6 A G 5 ? ? N1 A G 5 ? ? C2 A G 5 ? ? 116.39 125.10 -8.71 0.60 N 36 1 C4 A G 5 ? ? C5 A G 5 ? ? C6 A G 5 ? ? 122.99 118.80 4.19 0.60 N 37 1 C5 A G 5 ? ? C6 A G 5 ? ? N1 A G 5 ? ? 115.49 111.50 3.99 0.50 N 38 1 C4 A G 5 ? ? C5 A G 5 ? ? N7 A G 5 ? ? 108.29 110.80 -2.51 0.40 N 39 1 C5 A G 5 ? ? N7 A G 5 ? ? C8 A G 5 ? ? 108.32 104.30 4.02 0.50 N 40 1 N7 A G 5 ? ? C8 A G 5 ? ? N9 A G 5 ? ? 108.92 113.10 -4.18 0.50 N 41 1 C8 A G 5 ? ? N9 A G 5 ? ? C4 A G 5 ? ? 109.37 106.40 2.97 0.40 N 42 1 N1 A G 5 ? ? C6 A G 5 ? ? O6 A G 5 ? ? 124.47 119.90 4.57 0.60 N 43 1 C5 A G 5 ? ? C6 A G 5 ? ? O6 A G 5 ? ? 119.96 128.60 -8.64 0.60 N 44 1 "O5'" A A 6 ? ? P A A 6 ? ? OP2 A A 6 ? ? 95.25 105.70 -10.45 0.90 N 45 1 "O4'" A A 6 ? ? "C1'" A A 6 ? ? N9 A A 6 ? ? 101.97 108.20 -6.23 0.80 N 46 1 C6 A A 6 ? ? N1 A A 6 ? ? C2 A A 6 ? ? 125.16 118.60 6.56 0.60 N 47 1 N1 A A 6 ? ? C2 A A 6 ? ? N3 A A 6 ? ? 124.30 129.30 -5.00 0.50 N 48 1 C4 A A 6 ? ? C5 A A 6 ? ? C6 A A 6 ? ? 111.19 117.00 -5.81 0.50 N 49 1 C4 A A 6 ? ? C5 A A 6 ? ? N7 A A 6 ? ? 107.46 110.70 -3.24 0.50 N 50 1 C5 A A 6 ? ? N7 A A 6 ? ? C8 A A 6 ? ? 108.26 103.90 4.36 0.50 N 51 1 N7 A A 6 ? ? C8 A A 6 ? ? N9 A A 6 ? ? 106.32 113.80 -7.48 0.50 N 52 1 C8 A A 6 ? ? N9 A A 6 ? ? C4 A A 6 ? ? 112.33 105.80 6.53 0.40 N 53 1 C6 A A 6 ? ? C5 A A 6 ? ? N7 A A 6 ? ? 140.95 132.30 8.65 0.70 N 54 1 N1 A A 6 ? ? C6 A A 6 ? ? N6 A A 6 ? ? 108.38 118.60 -10.22 0.60 N 55 1 C5 A A 6 ? ? C6 A A 6 ? ? N6 A A 6 ? ? 133.97 123.70 10.27 0.80 N 56 1 C4 A A 6 ? ? N9 A A 6 ? ? "C1'" A A 6 ? ? 115.43 126.30 -10.87 1.80 N 57 1 OP1 A A 7 ? ? P A A 7 ? ? OP2 A A 7 ? ? 128.69 119.60 9.09 1.50 N 58 1 "O5'" A A 7 ? ? P A A 7 ? ? OP1 A A 7 ? ? 127.37 110.70 16.67 1.20 N 59 1 "O5'" A A 7 ? ? P A A 7 ? ? OP2 A A 7 ? ? 93.78 105.70 -11.92 0.90 N 60 1 "O4'" A A 7 ? ? "C1'" A A 7 ? ? N9 A A 7 ? ? 114.82 108.50 6.32 0.70 N 61 1 C6 A A 7 ? ? N1 A A 7 ? ? C2 A A 7 ? ? 113.32 118.60 -5.28 0.60 N 62 1 N1 A A 7 ? ? C2 A A 7 ? ? N3 A A 7 ? ? 123.75 129.30 -5.55 0.50 N 63 1 C2 A A 7 ? ? N3 A A 7 ? ? C4 A A 7 ? ? 123.77 110.60 13.17 0.50 N 64 1 N3 A A 7 ? ? C4 A A 7 ? ? C5 A A 7 ? ? 118.12 126.80 -8.68 0.70 N 65 1 C5 A A 7 ? ? C6 A A 7 ? ? N1 A A 7 ? ? 126.18 117.70 8.48 0.50 N 66 1 C4 A A 7 ? ? C5 A A 7 ? ? N7 A A 7 ? ? 107.49 110.70 -3.21 0.50 N 67 1 N9 A A 7 ? ? C4 A A 7 ? ? C5 A A 7 ? ? 109.47 105.80 3.67 0.40 N 68 1 N3 A A 7 ? ? C4 A A 7 ? ? N9 A A 7 ? ? 132.41 127.40 5.01 0.80 N 69 1 C6 A A 7 ? ? C5 A A 7 ? ? N7 A A 7 ? ? 137.90 132.30 5.60 0.70 N 70 1 N1 A A 7 ? ? C6 A A 7 ? ? N6 A A 7 ? ? 110.71 118.60 -7.89 0.60 N 71 1 "O4'" B G 1 ? ? "C4'" B G 1 ? ? "C3'" B G 1 ? ? 97.81 104.00 -6.19 1.00 N 72 1 "C1'" B G 1 ? ? "O4'" B G 1 ? ? "C4'" B G 1 ? ? 115.84 109.90 5.94 0.80 N 73 1 "C3'" B G 1 ? ? "C2'" B G 1 ? ? "C1'" B G 1 ? ? 96.90 101.30 -4.40 0.70 N 74 1 C6 B G 1 ? ? N1 B G 1 ? ? C2 B G 1 ? ? 120.02 125.10 -5.08 0.60 N 75 1 C5 B G 1 ? ? C6 B G 1 ? ? N1 B G 1 ? ? 115.94 111.50 4.44 0.50 N 76 1 C4 B G 1 ? ? C5 B G 1 ? ? N7 B G 1 ? ? 114.01 110.80 3.21 0.40 N 77 1 N1 B G 1 ? ? C2 B G 1 ? ? N2 B G 1 ? ? 102.52 116.20 -13.68 0.90 N 78 1 N3 B G 1 ? ? C2 B G 1 ? ? N2 B G 1 ? ? 130.01 119.90 10.11 0.70 N 79 1 "O3'" B G 1 ? ? P B C 2 ? ? "O5'" B C 2 ? ? 132.79 104.00 28.79 1.90 Y 80 1 "O3'" B G 1 ? ? P B C 2 ? ? OP1 B C 2 ? ? 91.11 105.20 -14.09 2.20 Y 81 1 "O5'" B C 2 ? ? "C5'" B C 2 ? ? "C4'" B C 2 ? ? 103.90 109.40 -5.50 0.80 N 82 1 "O4'" B C 2 ? ? "C4'" B C 2 ? ? "C3'" B C 2 ? ? 97.01 104.00 -6.99 1.00 N 83 1 C4 B C 2 ? ? C5 B C 2 ? ? C6 B C 2 ? ? 113.90 117.40 -3.50 0.50 N 84 1 C5 B C 2 ? ? C6 B C 2 ? ? N1 B C 2 ? ? 124.06 121.00 3.06 0.50 N 85 1 "O4'" B G 3 ? ? "C1'" B G 3 ? ? N9 B G 3 ? ? 113.51 108.50 5.01 0.70 N 86 1 C6 B G 3 ? ? N1 B G 3 ? ? C2 B G 3 ? ? 116.05 125.10 -9.05 0.60 N 87 1 C2 B G 3 ? ? N3 B G 3 ? ? C4 B G 3 ? ? 116.44 111.90 4.54 0.50 N 88 1 C5 B G 3 ? ? C6 B G 3 ? ? N1 B G 3 ? ? 119.86 111.50 8.36 0.50 N 89 1 C4 B G 3 ? ? C5 B G 3 ? ? N7 B G 3 ? ? 117.21 110.80 6.41 0.40 N 90 1 C5 B G 3 ? ? N7 B G 3 ? ? C8 B G 3 ? ? 98.01 104.30 -6.29 0.50 N 91 1 N7 B G 3 ? ? C8 B G 3 ? ? N9 B G 3 ? ? 116.88 113.10 3.78 0.50 N 92 1 N9 B G 3 ? ? C4 B G 3 ? ? C5 B G 3 ? ? 101.84 105.40 -3.56 0.40 N 93 1 N3 B G 3 ? ? C4 B G 3 ? ? N9 B G 3 ? ? 132.52 126.00 6.52 0.60 N 94 1 C6 B G 3 ? ? C5 B G 3 ? ? N7 B G 3 ? ? 123.06 130.40 -7.34 0.60 N 95 1 N1 B G 3 ? ? C6 B G 3 ? ? O6 B G 3 ? ? 131.34 119.90 11.44 0.60 N 96 1 C5 B G 3 ? ? C6 B G 3 ? ? O6 B G 3 ? ? 108.79 128.60 -19.81 0.60 N 97 1 "C2'" B G 4 ? ? "C3'" B G 4 ? ? "O3'" B G 4 ? ? 123.65 113.70 9.95 1.60 N 98 1 N1 B G 4 ? ? C2 B G 4 ? ? N3 B G 4 ? ? 116.28 123.90 -7.62 0.60 N 99 1 N3 B G 4 ? ? C4 B G 4 ? ? C5 B G 4 ? ? 133.29 128.60 4.69 0.50 N 100 1 C4 B G 4 ? ? C5 B G 4 ? ? C6 B G 4 ? ? 114.33 118.80 -4.47 0.60 N 101 1 C5 B G 4 ? ? C6 B G 4 ? ? N1 B G 4 ? ? 117.49 111.50 5.99 0.50 N 102 1 C4 B G 4 ? ? C5 B G 4 ? ? N7 B G 4 ? ? 120.07 110.80 9.27 0.40 N 103 1 C5 B G 4 ? ? N7 B G 4 ? ? C8 B G 4 ? ? 94.23 104.30 -10.07 0.50 N 104 1 N7 B G 4 ? ? C8 B G 4 ? ? N9 B G 4 ? ? 119.24 113.10 6.14 0.50 N 105 1 N9 B G 4 ? ? C4 B G 4 ? ? C5 B G 4 ? ? 99.25 105.40 -6.15 0.40 N 106 1 C6 B G 4 ? ? C5 B G 4 ? ? N7 B G 4 ? ? 125.38 130.40 -5.02 0.60 N 107 1 N1 B G 4 ? ? C2 B G 4 ? ? N2 B G 4 ? ? 124.00 116.20 7.80 0.90 N 108 1 N1 B G 4 ? ? C6 B G 4 ? ? O6 B G 4 ? ? 132.55 119.90 12.65 0.60 N 109 1 C5 B G 4 ? ? C6 B G 4 ? ? O6 B G 4 ? ? 109.84 128.60 -18.76 0.60 N 110 1 "C3'" B G 4 ? ? "O3'" B G 4 ? ? P B G 5 ? ? 135.59 119.70 15.89 1.20 Y 111 1 "O3'" B G 4 ? ? P B G 5 ? ? "O5'" B G 5 ? ? 82.86 104.00 -21.14 1.90 Y 112 1 "O5'" B G 5 ? ? P B G 5 ? ? OP2 B G 5 ? ? 119.36 110.70 8.66 1.20 N 113 1 P B G 5 ? ? "O5'" B G 5 ? ? "C5'" B G 5 ? ? 132.26 120.90 11.36 1.60 N 114 1 "C3'" B G 5 ? ? "C2'" B G 5 ? ? "C1'" B G 5 ? ? 96.99 101.30 -4.31 0.70 N 115 1 "O4'" B G 5 ? ? "C1'" B G 5 ? ? N9 B G 5 ? ? 114.27 108.50 5.77 0.70 N 116 1 C6 B G 5 ? ? N1 B G 5 ? ? C2 B G 5 ? ? 116.28 125.10 -8.82 0.60 N 117 1 C5 B G 5 ? ? C6 B G 5 ? ? N1 B G 5 ? ? 118.24 111.50 6.74 0.50 N 118 1 N7 B G 5 ? ? C8 B G 5 ? ? N9 B G 5 ? ? 119.70 113.10 6.60 0.50 N 119 1 C8 B G 5 ? ? N9 B G 5 ? ? C4 B G 5 ? ? 101.90 106.40 -4.50 0.40 N 120 1 N1 B G 5 ? ? C6 B G 5 ? ? O6 B G 5 ? ? 125.30 119.90 5.40 0.60 N 121 1 C5 B G 5 ? ? C6 B G 5 ? ? O6 B G 5 ? ? 116.14 128.60 -12.46 0.60 N 122 1 "O3'" B G 5 ? ? P B A 6 ? ? "O5'" B A 6 ? ? 118.78 104.00 14.78 1.90 Y 123 1 OP1 B A 6 ? ? P B A 6 ? ? OP2 B A 6 ? ? 129.73 119.60 10.13 1.50 N 124 1 "C3'" B A 6 ? ? "C2'" B A 6 ? ? "C1'" B A 6 ? ? 95.60 101.30 -5.70 0.70 N 125 1 "O4'" B A 6 ? ? "C1'" B A 6 ? ? N9 B A 6 ? ? 113.61 108.50 5.11 0.70 N 126 1 C6 B A 6 ? ? N1 B A 6 ? ? C2 B A 6 ? ? 122.69 118.60 4.09 0.60 N 127 1 N1 B A 6 ? ? C2 B A 6 ? ? N3 B A 6 ? ? 124.93 129.30 -4.37 0.50 N 128 1 C4 B A 6 ? ? C5 B A 6 ? ? N7 B A 6 ? ? 104.70 110.70 -6.00 0.50 N 129 1 C5 B A 6 ? ? N7 B A 6 ? ? C8 B A 6 ? ? 109.77 103.90 5.87 0.50 N 130 1 C6 B A 6 ? ? C5 B A 6 ? ? N7 B A 6 ? ? 138.23 132.30 5.93 0.70 N 131 1 C5 B A 6 ? ? C6 B A 6 ? ? N6 B A 6 ? ? 129.24 123.70 5.54 0.80 N 132 1 "C3'" B A 6 ? ? "O3'" B A 6 ? ? P B A 7 ? ? 138.68 119.70 18.98 1.20 Y 133 1 "O3'" B A 6 ? ? P B A 7 ? ? OP2 B A 7 ? ? 76.90 105.20 -28.30 2.20 Y 134 1 "O3'" B A 6 ? ? P B A 7 ? ? OP1 B A 7 ? ? 126.40 110.50 15.90 1.10 Y 135 1 "C5'" B A 7 ? ? "C4'" B A 7 ? ? "O4'" B A 7 ? ? 120.32 109.80 10.52 0.90 N 136 1 "C3'" B A 7 ? ? "C2'" B A 7 ? ? "C1'" B A 7 ? ? 106.62 101.50 5.12 0.80 N 137 1 N9 B A 7 ? ? "C1'" B A 7 ? ? "C2'" B A 7 ? ? 122.65 114.00 8.65 1.30 N 138 1 N1 B A 7 ? ? C2 B A 7 ? ? N3 B A 7 ? ? 123.08 129.30 -6.22 0.50 N 139 1 C2 B A 7 ? ? N3 B A 7 ? ? C4 B A 7 ? ? 119.43 110.60 8.83 0.50 N 140 1 N3 B A 7 ? ? C4 B A 7 ? ? C5 B A 7 ? ? 119.73 126.80 -7.07 0.70 N 141 1 N3 B A 7 ? ? C4 B A 7 ? ? N9 B A 7 ? ? 133.58 127.40 6.18 0.80 N 142 1 "O5'" C U 66 ? ? "C5'" C U 66 ? ? "C4'" C U 66 ? ? 103.24 109.40 -6.16 0.80 N 143 1 "O4'" C U 66 ? ? "C4'" C U 66 ? ? "C3'" C U 66 ? ? 94.75 104.00 -9.25 1.00 N 144 1 "C1'" C U 66 ? ? "O4'" C U 66 ? ? "C4'" C U 66 ? ? 116.02 109.90 6.12 0.80 N 145 1 N1 C U 66 ? ? C2 C U 66 ? ? O2 C U 66 ? ? 129.25 122.80 6.45 0.70 N 146 1 N3 C U 66 ? ? C2 C U 66 ? ? O2 C U 66 ? ? 115.74 122.20 -6.46 0.70 N 147 1 C5 C U 66 ? ? C4 C U 66 ? ? O4 C U 66 ? ? 129.80 125.90 3.90 0.60 N 148 1 "C3'" C U 67 ? ? "C2'" C U 67 ? ? "C1'" C U 67 ? ? 94.35 101.30 -6.95 0.70 N 149 1 C2 C U 67 ? ? N3 C U 67 ? ? C4 C U 67 ? ? 120.86 127.00 -6.14 0.60 N 150 1 N3 C U 67 ? ? C4 C U 67 ? ? C5 C U 67 ? ? 119.95 114.60 5.35 0.60 N 151 1 N3 C U 67 ? ? C4 C U 67 ? ? O4 C U 67 ? ? 114.23 119.40 -5.17 0.70 N 152 1 "O3'" C U 67 ? ? P C C 68 ? ? OP2 C C 68 ? ? 121.60 110.50 11.10 1.10 Y 153 1 "C3'" C C 68 ? ? "C2'" C C 68 ? ? "C1'" C C 68 ? ? 90.43 101.30 -10.87 0.70 N 154 1 C6 C C 68 ? ? N1 C C 68 ? ? C2 C C 68 ? ? 124.36 120.30 4.06 0.40 N 155 1 C5 C C 68 ? ? C6 C C 68 ? ? N1 C C 68 ? ? 116.56 121.00 -4.44 0.50 N 156 1 N1 C C 68 ? ? C2 C C 68 ? ? O2 C C 68 ? ? 125.61 118.90 6.71 0.60 N 157 1 N3 C C 68 ? ? C4 C C 68 ? ? N4 C C 68 ? ? 110.94 118.00 -7.06 0.70 N 158 1 C5 C C 68 ? ? C4 C C 68 ? ? N4 C C 68 ? ? 128.67 120.20 8.47 0.70 N 159 1 "O5'" C C 69 ? ? "C5'" C C 69 ? ? "C4'" C C 69 ? ? 102.51 109.40 -6.89 0.80 N 160 1 "O4'" C C 69 ? ? "C4'" C C 69 ? ? "C3'" C C 69 ? ? 97.63 104.00 -6.37 1.00 N 161 1 C2 C C 69 ? ? N3 C C 69 ? ? C4 C C 69 ? ? 124.95 119.90 5.05 0.50 N 162 1 N1 C C 69 ? ? C2 C C 69 ? ? O2 C C 69 ? ? 131.06 118.90 12.16 0.60 N 163 1 N3 C C 69 ? ? C2 C C 69 ? ? O2 C C 69 ? ? 112.27 121.90 -9.63 0.70 N 164 1 N3 C C 69 ? ? C4 C C 69 ? ? N4 C C 69 ? ? 109.36 118.00 -8.64 0.70 N 165 1 C5 C C 69 ? ? C4 C C 69 ? ? N4 C C 69 ? ? 129.29 120.20 9.09 0.70 N 166 1 C2 C C 69 ? ? N1 C C 69 ? ? "C1'" C C 69 ? ? 125.40 118.80 6.60 1.10 N 167 1 OP1 C C 70 ? ? P C C 70 ? ? OP2 C C 70 ? ? 130.87 119.60 11.27 1.50 N 168 1 "O5'" C C 70 ? ? P C C 70 ? ? OP2 C C 70 ? ? 120.58 110.70 9.88 1.20 N 169 1 N3 C C 70 ? ? C4 C C 70 ? ? C5 C C 70 ? ? 124.43 121.90 2.53 0.40 N 170 1 "C3'" C G 71 ? ? "C2'" C G 71 ? ? "C1'" C G 71 ? ? 97.08 101.30 -4.22 0.70 N 171 1 C2 C G 71 ? ? N3 C G 71 ? ? C4 C G 71 ? ? 108.34 111.90 -3.56 0.50 N 172 1 C5 C G 71 ? ? C6 C G 71 ? ? O6 C G 71 ? ? 123.84 128.60 -4.76 0.60 N 173 1 OP1 C C 72 ? ? P C C 72 ? ? OP2 C C 72 ? ? 129.99 119.60 10.39 1.50 N 174 1 "O4'" C C 72 ? ? "C1'" C C 72 ? ? N1 C C 72 ? ? 117.65 108.50 9.15 0.70 N 175 1 C6 C C 72 ? ? N1 C C 72 ? ? C2 C C 72 ? ? 124.15 120.30 3.85 0.40 N 176 1 N3 C C 72 ? ? C4 C C 72 ? ? C5 C C 72 ? ? 126.16 121.90 4.26 0.40 N 177 1 N1 C C 72 ? ? C2 C C 72 ? ? O2 C C 72 ? ? 125.37 118.90 6.47 0.60 N 178 1 N3 C C 72 ? ? C2 C C 72 ? ? O2 C C 72 ? ? 117.20 121.90 -4.70 0.70 N 179 1 "C3'" D U 66 ? ? "C2'" D U 66 ? ? "C1'" D U 66 ? ? 95.92 101.30 -5.38 0.70 N 180 1 "O4'" D U 66 ? ? "C1'" D U 66 ? ? N1 D U 66 ? ? 116.94 108.50 8.44 0.70 N 181 1 N1 D U 66 ? ? C2 D U 66 ? ? N3 D U 66 ? ? 121.13 114.90 6.23 0.60 N 182 1 C5 D U 66 ? ? C6 D U 66 ? ? N1 D U 66 ? ? 118.95 122.70 -3.75 0.50 N 183 1 N1 D U 66 ? ? C2 D U 66 ? ? O2 D U 66 ? ? 115.66 122.80 -7.14 0.70 N 184 1 N3 D U 66 ? ? C4 D U 66 ? ? O4 D U 66 ? ? 111.25 119.40 -8.15 0.70 N 185 1 C5 D U 66 ? ? C4 D U 66 ? ? O4 D U 66 ? ? 132.11 125.90 6.21 0.60 N 186 1 C6 D U 66 ? ? N1 D U 66 ? ? "C1'" D U 66 ? ? 130.68 121.20 9.48 1.40 N 187 1 C2 D U 66 ? ? N1 D U 66 ? ? "C1'" D U 66 ? ? 108.05 117.70 -9.65 1.20 N 188 1 "O5'" D U 67 ? ? P D U 67 ? ? OP1 D U 67 ? ? 124.56 110.70 13.86 1.20 N 189 1 "O5'" D U 67 ? ? P D U 67 ? ? OP2 D U 67 ? ? 92.68 105.70 -13.02 0.90 N 190 1 "O5'" D U 67 ? ? "C5'" D U 67 ? ? "C4'" D U 67 ? ? 102.20 109.40 -7.20 0.80 N 191 1 "O4'" D U 67 ? ? "C4'" D U 67 ? ? "C3'" D U 67 ? ? 95.80 104.00 -8.20 1.00 N 192 1 "C3'" D U 67 ? ? "C2'" D U 67 ? ? "C1'" D U 67 ? ? 95.40 101.30 -5.90 0.70 N 193 1 N3 D U 67 ? ? C4 D U 67 ? ? C5 D U 67 ? ? 119.30 114.60 4.70 0.60 N 194 1 N1 D U 67 ? ? C2 D U 67 ? ? O2 D U 67 ? ? 128.03 122.80 5.23 0.70 N 195 1 N3 D U 67 ? ? C4 D U 67 ? ? O4 D U 67 ? ? 113.31 119.40 -6.09 0.70 N 196 1 OP1 D C 68 ? ? P D C 68 ? ? OP2 D C 68 ? ? 109.85 119.60 -9.75 1.50 N 197 1 "O4'" D C 68 ? ? "C4'" D C 68 ? ? "C3'" D C 68 ? ? 95.98 104.00 -8.02 1.00 N 198 1 "O4'" D C 68 ? ? "C1'" D C 68 ? ? N1 D C 68 ? ? 102.64 108.20 -5.56 0.80 N 199 1 C6 D C 68 ? ? N1 D C 68 ? ? C2 D C 68 ? ? 116.77 120.30 -3.53 0.40 N 200 1 C2 D C 68 ? ? N3 D C 68 ? ? C4 D C 68 ? ? 123.50 119.90 3.60 0.50 N 201 1 C4 D C 68 ? ? C5 D C 68 ? ? C6 D C 68 ? ? 113.03 117.40 -4.37 0.50 N 202 1 C5 D C 68 ? ? C6 D C 68 ? ? N1 D C 68 ? ? 128.60 121.00 7.60 0.50 N 203 1 C2 D C 68 ? ? N1 D C 68 ? ? "C1'" D C 68 ? ? 127.29 118.80 8.49 1.10 N 204 1 N1 D C 69 ? ? C2 D C 69 ? ? O2 D C 69 ? ? 124.28 118.90 5.38 0.60 N 205 1 N3 D C 69 ? ? C2 D C 69 ? ? O2 D C 69 ? ? 114.64 121.90 -7.26 0.70 N 206 1 N3 D C 69 ? ? C4 D C 69 ? ? N4 D C 69 ? ? 106.48 118.00 -11.52 0.70 N 207 1 C5 D C 69 ? ? C4 D C 69 ? ? N4 D C 69 ? ? 130.60 120.20 10.40 0.70 N 208 1 "C5'" D C 70 ? ? "C4'" D C 70 ? ? "O4'" D C 70 ? ? 121.27 109.80 11.47 0.90 N 209 1 N3 D C 70 ? ? C4 D C 70 ? ? N4 D C 70 ? ? 104.59 118.00 -13.41 0.70 N 210 1 C5 D C 70 ? ? C4 D C 70 ? ? N4 D C 70 ? ? 133.53 120.20 13.33 0.70 N 211 1 C6 D C 70 ? ? N1 D C 70 ? ? "C1'" D C 70 ? ? 129.87 120.80 9.07 1.20 N 212 1 C2 D C 70 ? ? N1 D C 70 ? ? "C1'" D C 70 ? ? 111.03 118.80 -7.77 1.10 N 213 1 "O3'" D C 70 ? ? P D G 71 ? ? OP2 D G 71 ? ? 119.45 110.50 8.95 1.10 Y 214 1 "O5'" D G 71 ? ? P D G 71 ? ? OP2 D G 71 ? ? 97.14 105.70 -8.56 0.90 N 215 1 "C3'" D G 71 ? ? "C2'" D G 71 ? ? "C1'" D G 71 ? ? 97.07 101.30 -4.23 0.70 N 216 1 N1 D G 71 ? ? C2 D G 71 ? ? N3 D G 71 ? ? 129.70 123.90 5.80 0.60 N 217 1 C2 D G 71 ? ? N3 D G 71 ? ? C4 D G 71 ? ? 107.00 111.90 -4.90 0.50 N 218 1 C5 D G 71 ? ? N7 D G 71 ? ? C8 D G 71 ? ? 107.50 104.30 3.20 0.50 N 219 1 N3 D G 71 ? ? C2 D G 71 ? ? N2 D G 71 ? ? 115.20 119.90 -4.70 0.70 N 220 1 OP1 D C 72 ? ? P D C 72 ? ? OP2 D C 72 ? ? 133.35 119.60 13.75 1.50 N 221 1 "O5'" D C 72 ? ? P D C 72 ? ? OP1 D C 72 ? ? 120.46 110.70 9.76 1.20 N 222 1 "O5'" D C 72 ? ? P D C 72 ? ? OP2 D C 72 ? ? 95.26 105.70 -10.44 0.90 N 223 1 "C1'" D C 72 ? ? "O4'" D C 72 ? ? "C4'" D C 72 ? ? 117.51 109.90 7.61 0.80 N 224 1 "O4'" D C 72 ? ? "C1'" D C 72 ? ? "C2'" D C 72 ? ? 97.04 105.80 -8.76 1.00 N 225 1 "O4'" D C 72 ? ? "C1'" D C 72 ? ? N1 D C 72 ? ? 127.55 108.50 19.05 0.70 N 226 1 C6 D C 72 ? ? N1 D C 72 ? ? C2 D C 72 ? ? 116.91 120.30 -3.39 0.40 N 227 1 C4 D C 72 ? ? C5 D C 72 ? ? C6 D C 72 ? ? 120.74 117.40 3.34 0.50 N 228 1 N1 D C 72 ? ? C2 D C 72 ? ? O2 D C 72 ? ? 124.62 118.90 5.72 0.60 N 229 1 N3 D C 72 ? ? C2 D C 72 ? ? O2 D C 72 ? ? 112.04 121.90 -9.86 0.70 N 230 1 N3 D C 72 ? ? C4 D C 72 ? ? N4 D C 72 ? ? 112.87 118.00 -5.13 0.70 N 231 1 C5 D C 72 ? ? C4 D C 72 ? ? N4 D C 72 ? ? 125.63 120.20 5.43 0.70 N # _ndb_struct_conf_na.entry_id 2VAL _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 C C 7 1_555 -0.835 0.059 -0.024 -0.655 -8.911 5.394 1 A_G1:C72_C A 1 ? C 72 ? 19 1 1 A C 2 1_555 C G 6 1_555 0.859 -0.235 -0.038 5.011 -12.308 3.581 2 A_C2:G71_C A 2 ? C 71 ? 19 1 1 A G 3 1_555 C C 5 1_555 -0.436 -0.331 -0.018 1.716 -8.167 0.916 3 A_G3:C70_C A 3 ? C 70 ? 19 1 1 A G 4 1_555 C C 4 1_555 -0.144 0.074 -0.107 -3.540 -9.830 5.585 4 A_G4:C69_C A 4 ? C 69 ? 19 1 1 A G 5 1_555 C C 3 1_555 -0.409 -0.081 -0.181 -7.556 -9.110 -0.128 5 A_G5:C68_C A 5 ? C 68 ? 19 1 1 A A 6 1_555 C U 2 1_555 -0.105 0.030 -0.134 -7.548 -14.950 3.945 6 A_A6:U67_C A 6 ? C 67 ? 20 1 1 A A 7 1_555 C U 1 1_555 -0.343 -0.301 -0.071 -5.636 -9.023 1.064 7 A_A7:U66_C A 7 ? C 66 ? 20 1 1 B G 1 1_555 D C 7 1_555 0.377 -0.319 -0.229 -6.912 -7.383 -9.076 8 B_G1:C72_D B 1 ? D 72 ? 19 1 1 B C 2 1_555 D G 6 1_555 0.476 -0.252 -0.020 0.762 -6.714 1.131 9 B_C2:G71_D B 2 ? D 71 ? 19 1 1 B G 3 1_555 D C 5 1_555 0.031 -0.065 -0.166 -2.496 -10.145 -1.000 10 B_G3:C70_D B 3 ? D 70 ? 19 1 1 B G 4 1_555 D C 4 1_555 0.609 -0.112 0.107 -3.065 -13.702 3.304 11 B_G4:C69_D B 4 ? D 69 ? 19 1 1 B G 5 1_555 D C 3 1_555 -0.525 -0.067 0.350 -1.541 -16.180 5.451 12 B_G5:C68_D B 5 ? D 68 ? 19 1 1 B A 6 1_555 D U 2 1_555 -0.223 -0.091 0.021 -5.157 -14.575 -10.792 13 B_A6:U67_D B 6 ? D 67 ? 20 1 1 B A 7 1_555 D U 1 1_555 0.422 -0.053 0.035 -3.058 -7.061 -11.086 14 B_A7:U66_D B 7 ? D 66 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 C C 7 1_555 A C 2 1_555 C G 6 1_555 -0.034 -1.583 3.193 -0.334 3.031 40.305 -2.618 0.013 3.071 4.391 0.484 40.416 1 AA_G1C2:G71C72_CC A 1 ? C 72 ? A 2 ? C 71 ? 1 A C 2 1_555 C G 6 1_555 A G 3 1_555 C C 5 1_555 -0.623 -1.810 3.204 -1.452 10.417 24.659 -6.274 1.015 2.294 23.095 3.219 26.776 2 AA_C2G3:C70G71_CC A 2 ? C 71 ? A 3 ? C 70 ? 1 A G 3 1_555 C C 5 1_555 A G 4 1_555 C C 4 1_555 0.646 -1.902 3.405 0.789 5.572 30.506 -4.622 -1.057 3.033 10.478 -1.485 31.009 3 AA_G3G4:C69C70_CC A 3 ? C 70 ? A 4 ? C 69 ? 1 A G 4 1_555 C C 4 1_555 A G 5 1_555 C C 3 1_555 -0.265 -1.982 3.271 0.861 8.240 31.007 -4.957 0.623 2.662 15.079 -1.575 32.069 4 AA_G4G5:C68C69_CC A 4 ? C 69 ? A 5 ? C 68 ? 1 A G 5 1_555 C C 3 1_555 A A 6 1_555 C U 2 1_555 0.595 -1.725 3.172 1.790 12.183 27.045 -5.593 -0.834 2.237 24.503 -3.599 29.669 5 AA_G5A6:U67C68_CC A 5 ? C 68 ? A 6 ? C 67 ? 1 A A 6 1_555 C U 2 1_555 A A 7 1_555 C U 1 1_555 0.196 -1.822 3.213 -0.182 5.585 31.418 -4.264 -0.387 2.854 10.212 0.332 31.898 6 AA_A6A7:U66U67_CC A 6 ? C 67 ? A 7 ? C 66 ? 1 B G 1 1_555 D C 7 1_555 B C 2 1_555 D G 6 1_555 -0.258 -1.506 3.091 -1.522 7.300 29.398 -4.194 0.219 2.659 14.100 2.941 30.309 7 BB_G1C2:G71C72_DD B 1 ? D 72 ? B 2 ? D 71 ? 1 B C 2 1_555 D G 6 1_555 B G 3 1_555 D C 5 1_555 0.126 -1.344 3.377 1.764 11.055 31.614 -4.096 0.062 2.767 19.540 -3.118 33.489 8 BB_C2G3:C70G71_DD B 2 ? D 71 ? B 3 ? D 70 ? 1 B G 3 1_555 D C 5 1_555 B G 4 1_555 D C 4 1_555 -0.024 -1.675 3.140 -1.097 8.416 35.469 -3.733 -0.100 2.685 13.575 1.770 36.438 9 BB_G3G4:C69C70_DD B 3 ? D 70 ? B 4 ? D 69 ? 1 B G 4 1_555 D C 4 1_555 B G 5 1_555 D C 3 1_555 0.224 -2.232 3.086 -0.366 6.119 19.464 -8.607 -0.771 2.279 17.544 1.049 20.397 10 BB_G4G5:C68C69_DD B 4 ? D 69 ? B 5 ? D 68 ? 1 B G 5 1_555 D C 3 1_555 B A 6 1_555 D U 2 1_555 -0.631 -1.641 3.212 2.414 4.260 36.862 -3.113 1.294 2.965 6.700 -3.797 37.175 11 BB_G5A6:U67C68_DD B 5 ? D 68 ? B 6 ? D 67 ? 1 B A 6 1_555 D U 2 1_555 B A 7 1_555 D U 1 1_555 -0.255 -2.446 3.265 3.188 6.411 38.242 -4.403 0.745 2.805 9.682 -4.814 38.882 12 BB_A6A7:U66U67_DD B 6 ? D 67 ? B 7 ? D 66 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 water HOH #