data_2VAZ # _entry.id 2VAZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.283 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2VAZ PDBE EBI-33682 WWPDB D_1290033682 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details EMDB EMD-1391 'associated EM volume' 'STRUCTURED MRNAS REGULATE TRANSLATION INITIATION BY BINDING TO A DEDICATED SITE ON THE RIBOSOME.' PDB 1P6G unspecified ;REAL SPACE REFINED COORDINATES OF THE 30S SUBUNIT FITTEDINTO THE LOW RESOLUTION CRYO- EM MAP OF THE EF-G.GTP STATE OF E. COLI 70S RIBOSOME ; PDB 1P87 unspecified ;REAL SPACE REFINED COORDINATES OF THE 30S SUBUNIT FITTEDINTO THE LOW RESOLUTION CRYO- EM MAP OF THE INITIATION-LIKESTATE OF E. COLI 70S RIBOSOME ; PDB 2AVY unspecified ;CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROMESCHERICHIA COLI AT 3.5 A RESOLUTION. THIS FILE CONTAINS THE 30S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTALSTRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED INREMARK 400. ; PDB 2AW7 unspecified ;CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROMESCHERICHIA COLI AT 3.5 A RESOLUTION. THIS FILE CONTAINS THE 30S SUBUNIT OF THE SECOND 70S RIBOSOME. THE ENTIRECRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND ISDESCRIBED IN REMARK 400. ; # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2VAZ _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2007-09-05 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Marzi, S.' 1 'Myasnikov, A.G.' 2 'Serganov, A.' 3 'Ehresmann, C.' 4 'Romby, P.' 5 'Yusupov, M.' 6 'Klaholz, B.P.' 7 # _citation.id primary _citation.title 'Structured Mrnas Regulate Translation Initiation by Binding to the Platform of the Ribosome.' _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_volume 130 _citation.page_first 1019 _citation.page_last ? _citation.year 2007 _citation.journal_id_ASTM CELLB5 _citation.country US _citation.journal_id_ISSN 0092-8674 _citation.journal_id_CSD 0998 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17889647 _citation.pdbx_database_id_DOI 10.1016/J.CELL.2007.07.008 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Marzi, S.' 1 primary 'Myasnikov, A.G.' 2 primary 'Serganov, A.' 3 primary 'Ehresmann, C.' 4 primary 'Romby, P.' 5 primary 'Yusupov, M.' 6 primary 'Klaholz, B.P.' 7 # _cell.entry_id 2VAZ _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VAZ _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RPSO MRNA OPERATOR' 59427.113 1 ? ? 'HAIRPIN LOOP DOMAIN I AND PSEUDOKNOT' ? 2 polymer man '30S RIBOSOMAL PROTEIN S15' 10290.816 1 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'REPRESSOR S15' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no ;GGGCGAAUUCGAGCUCGGUACCCAACGUCGCGUAAAUUGUUUAACACUUUGCGUAACGUACACUGGGAUCGCUGAAUUAG AGAUCGGCGUCCUUUCAUUCUAUAUACUAAGGAGGUUAAAAUGUCUCUAAGUACUGAAGCAACAGCUAAAAUCGUUUCUG AGUUUGGUCGACCUGCAGGCAUGCA ; ;GGGCGAAUUCGAGCUCGGUACCCAACGUCGCGUAAAUUGUUUAACACUUUGCGUAACGUACACUGGGAUCGCUGAAUUAG AGAUCGGCGUCCUUUCAUUCUAUAUACUAAGGAGGUUAAAAUGUCUCUAAGUACUGAAGCAACAGCUAAAAUCGUUUCUG AGUUUGGUCGACCUGCAGGCAUGCA ; A ? 2 'polypeptide(L)' no no ;MSLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTQ LIERLGLRR ; ;MSLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTQ LIERLGLRR ; F ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 C n 1 5 G n 1 6 A n 1 7 A n 1 8 U n 1 9 U n 1 10 C n 1 11 G n 1 12 A n 1 13 G n 1 14 C n 1 15 U n 1 16 C n 1 17 G n 1 18 G n 1 19 U n 1 20 A n 1 21 C n 1 22 C n 1 23 C n 1 24 A n 1 25 A n 1 26 C n 1 27 G n 1 28 U n 1 29 C n 1 30 G n 1 31 C n 1 32 G n 1 33 U n 1 34 A n 1 35 A n 1 36 A n 1 37 U n 1 38 U n 1 39 G n 1 40 U n 1 41 U n 1 42 U n 1 43 A n 1 44 A n 1 45 C n 1 46 A n 1 47 C n 1 48 U n 1 49 U n 1 50 U n 1 51 G n 1 52 C n 1 53 G n 1 54 U n 1 55 A n 1 56 A n 1 57 C n 1 58 G n 1 59 U n 1 60 A n 1 61 C n 1 62 A n 1 63 C n 1 64 U n 1 65 G n 1 66 G n 1 67 G n 1 68 A n 1 69 U n 1 70 C n 1 71 G n 1 72 C n 1 73 U n 1 74 G n 1 75 A n 1 76 A n 1 77 U n 1 78 U n 1 79 A n 1 80 G n 1 81 A n 1 82 G n 1 83 A n 1 84 U n 1 85 C n 1 86 G n 1 87 G n 1 88 C n 1 89 G n 1 90 U n 1 91 C n 1 92 C n 1 93 U n 1 94 U n 1 95 U n 1 96 C n 1 97 A n 1 98 U n 1 99 U n 1 100 C n 1 101 U n 1 102 A n 1 103 U n 1 104 A n 1 105 U n 1 106 A n 1 107 C n 1 108 U n 1 109 A n 1 110 A n 1 111 G n 1 112 G n 1 113 A n 1 114 G n 1 115 G n 1 116 U n 1 117 U n 1 118 A n 1 119 A n 1 120 A n 1 121 A n 1 122 U n 1 123 G n 1 124 U n 1 125 C n 1 126 U n 1 127 C n 1 128 U n 1 129 A n 1 130 A n 1 131 G n 1 132 U n 1 133 A n 1 134 C n 1 135 U n 1 136 G n 1 137 A n 1 138 A n 1 139 G n 1 140 C n 1 141 A n 1 142 A n 1 143 C n 1 144 A n 1 145 G n 1 146 C n 1 147 U n 1 148 A n 1 149 A n 1 150 A n 1 151 A n 1 152 U n 1 153 C n 1 154 G n 1 155 U n 1 156 U n 1 157 U n 1 158 C n 1 159 U n 1 160 G n 1 161 A n 1 162 G n 1 163 U n 1 164 U n 1 165 U n 1 166 G n 1 167 G n 1 168 U n 1 169 C n 1 170 G n 1 171 A n 1 172 C n 1 173 C n 1 174 U n 1 175 G n 1 176 C n 1 177 A n 1 178 G n 1 179 G n 1 180 C n 1 181 A n 1 182 U n 1 183 G n 1 184 C n 1 185 A n 2 1 MET n 2 2 SER n 2 3 LEU n 2 4 SER n 2 5 THR n 2 6 GLU n 2 7 ALA n 2 8 THR n 2 9 ALA n 2 10 LYS n 2 11 ILE n 2 12 VAL n 2 13 SER n 2 14 GLU n 2 15 PHE n 2 16 GLY n 2 17 ARG n 2 18 ASP n 2 19 ALA n 2 20 ASN n 2 21 ASP n 2 22 THR n 2 23 GLY n 2 24 SER n 2 25 THR n 2 26 GLU n 2 27 VAL n 2 28 GLN n 2 29 VAL n 2 30 ALA n 2 31 LEU n 2 32 LEU n 2 33 THR n 2 34 ALA n 2 35 GLN n 2 36 ILE n 2 37 ASN n 2 38 HIS n 2 39 LEU n 2 40 GLN n 2 41 GLY n 2 42 HIS n 2 43 PHE n 2 44 ALA n 2 45 GLU n 2 46 HIS n 2 47 LYS n 2 48 LYS n 2 49 ASP n 2 50 HIS n 2 51 HIS n 2 52 SER n 2 53 ARG n 2 54 ARG n 2 55 GLY n 2 56 LEU n 2 57 LEU n 2 58 ARG n 2 59 MET n 2 60 VAL n 2 61 SER n 2 62 GLN n 2 63 ARG n 2 64 ARG n 2 65 LYS n 2 66 LEU n 2 67 LEU n 2 68 ASP n 2 69 TYR n 2 70 LEU n 2 71 LYS n 2 72 ARG n 2 73 LYS n 2 74 ASP n 2 75 VAL n 2 76 ALA n 2 77 ARG n 2 78 TYR n 2 79 THR n 2 80 GLN n 2 81 LEU n 2 82 ILE n 2 83 GLU n 2 84 ARG n 2 85 LEU n 2 86 GLY n 2 87 LEU n 2 88 ARG n 2 89 ARG n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET11C _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'ESCHERICHIA COLI' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 562 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2VAZ 1 ? ? 2VAZ ? 2 PDB 2VAZ 2 ? ? 2VAZ ? 3 UNP RS15_ECOLI 2 ? ? P0ADZ4 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2VAZ A 1 ? 185 ? 2VAZ -15 ? 169 ? -15 169 2 2 2VAZ F 1 ? 1 ? 2VAZ 100 ? 100 ? 100 100 3 3 2VAZ F 2 ? 89 ? P0ADZ4 1 ? 88 ? 101 188 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2VAZ _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 2VAZ _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 10.00 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 86 _refine_hist.pdbx_number_atoms_nucleic_acid 82 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 168 _refine_hist.d_res_high 10.00 _refine_hist.d_res_low . # _struct.entry_id 2VAZ _struct.title 'Model of the S15-mRNA complex fitted into the cryo-EM map of the 70S entrapment complex.' _struct.pdbx_descriptor '30S RIBOSOMAL PROTEIN S15/RNA Complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'P ATOMS ONLY, CHAIN A ; CA ATOMS ONLY, CHAIN F' # _struct_keywords.entry_id 2VAZ _struct_keywords.pdbx_keywords TRANSLATION _struct_keywords.text ;TRANSLATION, PLATFORM-BINDING CENTER, GENE EXPRESSION REGULATION, RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN, PROTEIN SYNTHESIS, TRANSLATION INITIATION, RIBOSOME, RIBOSWITCH, RNA-BINDING, RRNA-BINDING, RNA PSEUDOKNOT, MRNA STRUCTURE, REPRESSOR PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _database_PDB_matrix.entry_id 2VAZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2VAZ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 -15 ? ? ? A . n A 1 2 G 2 -14 ? ? ? A . n A 1 3 G 3 -13 ? ? ? A . n A 1 4 C 4 -12 ? ? ? A . n A 1 5 G 5 -11 ? ? ? A . n A 1 6 A 6 -10 ? ? ? A . n A 1 7 A 7 -9 ? ? ? A . n A 1 8 U 8 -8 ? ? ? A . n A 1 9 U 9 -7 ? ? ? A . n A 1 10 C 10 -6 ? ? ? A . n A 1 11 G 11 -5 ? ? ? A . n A 1 12 A 12 -4 ? ? ? A . n A 1 13 G 13 -3 ? ? ? A . n A 1 14 C 14 -2 ? ? ? A . n A 1 15 U 15 -1 ? ? ? A . n A 1 16 C 16 0 ? ? ? A . n A 1 17 G 17 1 ? ? ? A . n A 1 18 G 18 2 ? ? ? A . n A 1 19 U 19 3 ? ? ? A . n A 1 20 A 20 4 ? ? ? A . n A 1 21 C 21 5 ? ? ? A . n A 1 22 C 22 6 ? ? ? A . n A 1 23 C 23 7 ? ? ? A . n A 1 24 A 24 8 ? ? ? A . n A 1 25 A 25 9 9 A A A . n A 1 26 C 26 10 10 C C A . n A 1 27 G 27 11 11 G G A . n A 1 28 U 28 12 12 U U A . n A 1 29 C 29 13 13 C C A . n A 1 30 G 30 14 14 G G A . n A 1 31 C 31 15 15 C C A . n A 1 32 G 32 16 16 G G A . n A 1 33 U 33 17 17 U U A . n A 1 34 A 34 18 18 A A A . n A 1 35 A 35 19 19 A A A . n A 1 36 A 36 20 20 A A A . n A 1 37 U 37 21 21 U U A . n A 1 38 U 38 22 22 U U A . n A 1 39 G 39 23 23 G G A . n A 1 40 U 40 24 24 U U A . n A 1 41 U 41 25 25 U U A . n A 1 42 U 42 26 26 U U A . n A 1 43 A 43 27 27 A A A . n A 1 44 A 44 28 28 A A A . n A 1 45 C 45 29 29 C C A . n A 1 46 A 46 30 30 A A A . n A 1 47 C 47 31 31 C C A . n A 1 48 U 48 32 32 U U A . n A 1 49 U 49 33 33 U U A . n A 1 50 U 50 34 34 U U A . n A 1 51 G 51 35 35 G G A . n A 1 52 C 52 36 36 C C A . n A 1 53 G 53 37 37 G G A . n A 1 54 U 54 38 38 U U A . n A 1 55 A 55 39 39 A A A . n A 1 56 A 56 40 40 A A A . n A 1 57 C 57 41 41 C C A . n A 1 58 G 58 42 42 G G A . n A 1 59 U 59 43 43 U U A . n A 1 60 A 60 44 44 A A A . n A 1 61 C 61 45 45 C C A . n A 1 62 A 62 46 46 A A A . n A 1 63 C 63 47 47 C C A . n A 1 64 U 64 48 48 U U A . n A 1 65 G 65 49 49 G G A . n A 1 66 G 66 50 50 G G A . n A 1 67 G 67 51 51 G G A . n A 1 68 A 68 52 52 A A A . n A 1 69 U 69 53 53 U U A . n A 1 70 C 70 54 54 C C A . n A 1 71 G 71 55 55 G G A . n A 1 72 C 72 56 56 C C A . n A 1 73 U 73 57 57 U U A . n A 1 74 G 74 58 58 G G A . n A 1 75 A 75 59 59 A A A . n A 1 76 A 76 60 60 A A A . n A 1 77 U 77 61 61 U U A . n A 1 78 U 78 62 62 U U A . n A 1 79 A 79 63 63 A A A . n A 1 80 G 80 64 64 G G A . n A 1 81 A 81 65 65 A A A . n A 1 82 G 82 66 66 G G A . n A 1 83 A 83 67 67 A A A . n A 1 84 U 84 68 68 U U A . n A 1 85 C 85 69 69 C C A . n A 1 86 G 86 70 70 G G A . n A 1 87 G 87 71 71 G G A . n A 1 88 C 88 72 72 C C A . n A 1 89 G 89 73 73 G G A . n A 1 90 U 90 74 74 U U A . n A 1 91 C 91 75 75 C C A . n A 1 92 C 92 76 ? ? ? A . n A 1 93 U 93 77 ? ? ? A . n A 1 94 U 94 78 ? ? ? A . n A 1 95 U 95 79 ? ? ? A . n A 1 96 C 96 80 ? ? ? A . n A 1 97 A 97 81 ? ? ? A . n A 1 98 U 98 82 ? ? ? A . n A 1 99 U 99 83 ? ? ? A . n A 1 100 C 100 84 ? ? ? A . n A 1 101 U 101 85 ? ? ? A . n A 1 102 A 102 86 ? ? ? A . n A 1 103 U 103 87 ? ? ? A . n A 1 104 A 104 88 ? ? ? A . n A 1 105 U 105 89 ? ? ? A . n A 1 106 A 106 90 ? ? ? A . n A 1 107 C 107 91 ? ? ? A . n A 1 108 U 108 92 92 U U A . n A 1 109 A 109 93 93 A A A . n A 1 110 A 110 94 94 A A A . n A 1 111 G 111 95 95 G G A . n A 1 112 G 112 96 96 G G A . n A 1 113 A 113 97 97 A A A . n A 1 114 G 114 98 98 G G A . n A 1 115 G 115 99 99 G G A . n A 1 116 U 116 100 100 U U A . n A 1 117 U 117 101 ? ? ? A . n A 1 118 A 118 102 ? ? ? A . n A 1 119 A 119 103 ? ? ? A . n A 1 120 A 120 104 ? ? ? A . n A 1 121 A 121 105 ? ? ? A . n A 1 122 U 122 106 ? ? ? A . n A 1 123 G 123 107 ? ? ? A . n A 1 124 U 124 108 ? ? ? A . n A 1 125 C 125 109 109 C C A . n A 1 126 U 126 110 110 U U A . n A 1 127 C 127 111 111 C C A . n A 1 128 U 128 112 112 U U A . n A 1 129 A 129 113 113 A A A . n A 1 130 A 130 114 114 A A A . n A 1 131 G 131 115 ? ? ? A . n A 1 132 U 132 116 ? ? ? A . n A 1 133 A 133 117 ? ? ? A . n A 1 134 C 134 118 ? ? ? A . n A 1 135 U 135 119 ? ? ? A . n A 1 136 G 136 120 ? ? ? A . n A 1 137 A 137 121 ? ? ? A . n A 1 138 A 138 122 ? ? ? A . n A 1 139 G 139 123 ? ? ? A . n A 1 140 C 140 124 ? ? ? A . n A 1 141 A 141 125 ? ? ? A . n A 1 142 A 142 126 ? ? ? A . n A 1 143 C 143 127 ? ? ? A . n A 1 144 A 144 128 ? ? ? A . n A 1 145 G 145 129 ? ? ? A . n A 1 146 C 146 130 ? ? ? A . n A 1 147 U 147 131 ? ? ? A . n A 1 148 A 148 132 ? ? ? A . n A 1 149 A 149 133 ? ? ? A . n A 1 150 A 150 134 ? ? ? A . n A 1 151 A 151 135 ? ? ? A . n A 1 152 U 152 136 ? ? ? A . n A 1 153 C 153 137 ? ? ? A . n A 1 154 G 154 138 ? ? ? A . n A 1 155 U 155 139 ? ? ? A . n A 1 156 U 156 140 ? ? ? A . n A 1 157 U 157 141 ? ? ? A . n A 1 158 C 158 142 ? ? ? A . n A 1 159 U 159 143 ? ? ? A . n A 1 160 G 160 144 ? ? ? A . n A 1 161 A 161 145 ? ? ? A . n A 1 162 G 162 146 ? ? ? A . n A 1 163 U 163 147 ? ? ? A . n A 1 164 U 164 148 ? ? ? A . n A 1 165 U 165 149 ? ? ? A . n A 1 166 G 166 150 ? ? ? A . n A 1 167 G 167 151 ? ? ? A . n A 1 168 U 168 152 ? ? ? A . n A 1 169 C 169 153 ? ? ? A . n A 1 170 G 170 154 ? ? ? A . n A 1 171 A 171 155 ? ? ? A . n A 1 172 C 172 156 ? ? ? A . n A 1 173 C 173 157 ? ? ? A . n A 1 174 U 174 158 ? ? ? A . n A 1 175 G 175 159 ? ? ? A . n A 1 176 C 176 160 ? ? ? A . n A 1 177 A 177 161 ? ? ? A . n A 1 178 G 178 162 ? ? ? A . n A 1 179 G 179 163 ? ? ? A . n A 1 180 C 180 164 ? ? ? A . n A 1 181 A 181 165 ? ? ? A . n A 1 182 U 182 166 ? ? ? A . n A 1 183 G 183 167 ? ? ? A . n A 1 184 C 184 168 ? ? ? A . n A 1 185 A 185 169 ? ? ? A . n B 2 1 MET 1 100 ? ? ? F . n B 2 2 SER 2 101 101 SER SER F . n B 2 3 LEU 3 102 102 LEU LEU F . n B 2 4 SER 4 103 103 SER SER F . n B 2 5 THR 5 104 104 THR THR F . n B 2 6 GLU 6 105 105 GLU GLU F . n B 2 7 ALA 7 106 106 ALA ALA F . n B 2 8 THR 8 107 107 THR THR F . n B 2 9 ALA 9 108 108 ALA ALA F . n B 2 10 LYS 10 109 109 LYS LYS F . n B 2 11 ILE 11 110 110 ILE ILE F . n B 2 12 VAL 12 111 111 VAL VAL F . n B 2 13 SER 13 112 112 SER SER F . n B 2 14 GLU 14 113 113 GLU GLU F . n B 2 15 PHE 15 114 114 PHE PHE F . n B 2 16 GLY 16 115 115 GLY GLY F . n B 2 17 ARG 17 116 116 ARG ARG F . n B 2 18 ASP 18 117 117 ASP ASP F . n B 2 19 ALA 19 118 118 ALA ALA F . n B 2 20 ASN 20 119 119 ASN ASN F . n B 2 21 ASP 21 120 120 ASP ASP F . n B 2 22 THR 22 121 121 THR THR F . n B 2 23 GLY 23 122 122 GLY GLY F . n B 2 24 SER 24 123 123 SER SER F . n B 2 25 THR 25 124 124 THR THR F . n B 2 26 GLU 26 125 125 GLU GLU F . n B 2 27 VAL 27 126 126 VAL VAL F . n B 2 28 GLN 28 127 127 GLN GLN F . n B 2 29 VAL 29 128 128 VAL VAL F . n B 2 30 ALA 30 129 129 ALA ALA F . n B 2 31 LEU 31 130 130 LEU LEU F . n B 2 32 LEU 32 131 131 LEU LEU F . n B 2 33 THR 33 132 132 THR THR F . n B 2 34 ALA 34 133 133 ALA ALA F . n B 2 35 GLN 35 134 134 GLN GLN F . n B 2 36 ILE 36 135 135 ILE ILE F . n B 2 37 ASN 37 136 136 ASN ASN F . n B 2 38 HIS 38 137 137 HIS HIS F . n B 2 39 LEU 39 138 138 LEU LEU F . n B 2 40 GLN 40 139 139 GLN GLN F . n B 2 41 GLY 41 140 140 GLY GLY F . n B 2 42 HIS 42 141 141 HIS HIS F . n B 2 43 PHE 43 142 142 PHE PHE F . n B 2 44 ALA 44 143 143 ALA ALA F . n B 2 45 GLU 45 144 144 GLU GLU F . n B 2 46 HIS 46 145 145 HIS HIS F . n B 2 47 LYS 47 146 146 LYS LYS F . n B 2 48 LYS 48 147 147 LYS LYS F . n B 2 49 ASP 49 148 148 ASP ASP F . n B 2 50 HIS 50 149 149 HIS HIS F . n B 2 51 HIS 51 150 150 HIS HIS F . n B 2 52 SER 52 151 151 SER SER F . n B 2 53 ARG 53 152 152 ARG ARG F . n B 2 54 ARG 54 153 153 ARG ARG F . n B 2 55 GLY 55 154 154 GLY GLY F . n B 2 56 LEU 56 155 155 LEU LEU F . n B 2 57 LEU 57 156 156 LEU LEU F . n B 2 58 ARG 58 157 157 ARG ARG F . n B 2 59 MET 59 158 158 MET MET F . n B 2 60 VAL 60 159 159 VAL VAL F . n B 2 61 SER 61 160 160 SER SER F . n B 2 62 GLN 62 161 161 GLN GLN F . n B 2 63 ARG 63 162 162 ARG ARG F . n B 2 64 ARG 64 163 163 ARG ARG F . n B 2 65 LYS 65 164 164 LYS LYS F . n B 2 66 LEU 66 165 165 LEU LEU F . n B 2 67 LEU 67 166 166 LEU LEU F . n B 2 68 ASP 68 167 167 ASP ASP F . n B 2 69 TYR 69 168 168 TYR TYR F . n B 2 70 LEU 70 169 169 LEU LEU F . n B 2 71 LYS 71 170 170 LYS LYS F . n B 2 72 ARG 72 171 171 ARG ARG F . n B 2 73 LYS 73 172 172 LYS LYS F . n B 2 74 ASP 74 173 173 ASP ASP F . n B 2 75 VAL 75 174 174 VAL VAL F . n B 2 76 ALA 76 175 175 ALA ALA F . n B 2 77 ARG 77 176 176 ARG ARG F . n B 2 78 TYR 78 177 177 TYR TYR F . n B 2 79 THR 79 178 178 THR THR F . n B 2 80 GLN 80 179 179 GLN GLN F . n B 2 81 LEU 81 180 180 LEU LEU F . n B 2 82 ILE 82 181 181 ILE ILE F . n B 2 83 GLU 83 182 182 GLU GLU F . n B 2 84 ARG 84 183 183 ARG ARG F . n B 2 85 LEU 85 184 184 LEU LEU F . n B 2 86 GLY 86 185 185 GLY GLY F . n B 2 87 LEU 87 186 186 LEU LEU F . n B 2 88 ARG 88 187 ? ? ? F . n B 2 89 ARG 89 188 ? ? ? F . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-02 2 'Structure model' 1 1 2012-11-14 3 'Structure model' 1 2 2017-08-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Other 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' em_imaging 2 3 'Structure model' em_software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_em_imaging.nominal_defocus_max' 2 3 'Structure model' '_em_imaging.nominal_defocus_min' 3 3 'Structure model' '_em_software.fitting_id' 4 3 'Structure model' '_em_software.image_processing_id' 5 3 'Structure model' '_em_software.name' # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 2VAZ _em_3d_fitting.ref_protocol OTHER _em_3d_fitting.ref_space REAL _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details 'METHOD--MANUAL REFINEMENT PROTOCOL--X-RAY AND HOMOLOGY MODELS' _em_3d_fitting.method ? # loop_ _em_3d_fitting_list.3d_fitting_id _em_3d_fitting_list.id _em_3d_fitting_list.pdb_entry_id _em_3d_fitting_list.pdb_chain_id _em_3d_fitting_list.details 1 1 2AW7 ? ? 1 2 2AWB ? ? # _em_3d_reconstruction.entry_id 2VAZ _em_3d_reconstruction.id 1 _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.num_particles 31415 _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method 'MANUAL FITTING' _em_3d_reconstruction.nominal_pixel_size 3 _em_3d_reconstruction.actual_pixel_size 3 _em_3d_reconstruction.resolution 10 _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.details ;THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE RECORDS ARE MEANINGLESS. THE MRNA HAS BEEN MODELED USING MANIP (MASSIRE AND WESTHOF). ; _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.resolution_method ? _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name '20 MM TRIS-HCL PH 7.5, 60 MM KCL, 1MM DTT, 7.5 MM MGCL2' _em_buffer.pH 7.5 _em_buffer.details '20 MM TRIS-HCL PH 7.5, 60 MM KCL, 1MM DTT, 7.5 MM MGCL2' # _em_entity_assembly.id 1 _em_entity_assembly.name '70S PRE-INITIATION COMPLEX ENTRAPPED BY S15- RPSOMRNA' _em_entity_assembly.type RIBOSOME _em_entity_assembly.parent_id 0 _em_entity_assembly.synonym ? _em_entity_assembly.details ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 2VAZ _em_image_scans.id 1 _em_image_scans.image_recording_id 1 _em_image_scans.number_digital_images 67 _em_image_scans.citation_id ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.details ? _em_image_scans.dimension_height ? _em_image_scans.dimension_width ? _em_image_scans.frames_per_image ? # _em_imaging.entry_id 2VAZ _em_imaging.id 1 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.specimen_id 1 _em_imaging.date 2005-01-05 _em_imaging.temperature 77 _em_imaging.microscope_model 'FEI TECNAI F20' _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 3500 _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_cs 2.0 _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_magnification 50000 _em_imaging.calibrated_magnification 51484 _em_imaging.accelerating_voltage 200 _em_imaging.details ? _em_imaging.specimen_holder_type . _em_imaging.specimen_holder_model . _em_imaging.citation_id ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.calibrated_defocus_max ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_min ? _em_imaging.cryogen ? _em_imaging.residual_tilt ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details 'HOLEY CARBON' _em_sample_support.method ? _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? # _em_vitrification.entry_id 2VAZ _em_vitrification.id 1 _em_vitrification.instrument 'HOMEMADE PLUNGER' _em_vitrification.cryogen_name ETHANE _em_vitrification.specimen_id 1 _em_vitrification.details 'BLOT FOR 2 SECONDS BEFORE PLUNGING IN LIQUID ETHANE USING A HOME-MADE CRYO- PLUNGER' _em_vitrification.citation_id ? _em_vitrification.humidity ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 2VAZ _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' # _em_single_particle_entity.entry_id 2VAZ _em_single_particle_entity.id 1 _em_single_particle_entity.point_symmetry C1 _em_single_particle_entity.image_processing_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A G -15 ? A G 1 2 1 Y 1 A G -14 ? A G 2 3 1 Y 1 A G -13 ? A G 3 4 1 Y 1 A C -12 ? A C 4 5 1 Y 1 A G -11 ? A G 5 6 1 Y 1 A A -10 ? A A 6 7 1 Y 1 A A -9 ? A A 7 8 1 Y 1 A U -8 ? A U 8 9 1 Y 1 A U -7 ? A U 9 10 1 Y 1 A C -6 ? A C 10 11 1 Y 1 A G -5 ? A G 11 12 1 Y 1 A A -4 ? A A 12 13 1 Y 1 A G -3 ? A G 13 14 1 Y 1 A C -2 ? A C 14 15 1 Y 1 A U -1 ? A U 15 16 1 Y 1 A C 0 ? A C 16 17 1 Y 1 A G 1 ? A G 17 18 1 Y 1 A G 2 ? A G 18 19 1 Y 1 A U 3 ? A U 19 20 1 Y 1 A A 4 ? A A 20 21 1 Y 1 A C 5 ? A C 21 22 1 Y 1 A C 6 ? A C 22 23 1 Y 1 A C 7 ? A C 23 24 1 Y 1 A A 8 ? A A 24 25 1 Y 1 A C 76 ? A C 92 26 1 Y 1 A U 77 ? A U 93 27 1 Y 1 A U 78 ? A U 94 28 1 Y 1 A U 79 ? A U 95 29 1 Y 1 A C 80 ? A C 96 30 1 Y 1 A A 81 ? A A 97 31 1 Y 1 A U 82 ? A U 98 32 1 Y 1 A U 83 ? A U 99 33 1 Y 1 A C 84 ? A C 100 34 1 Y 1 A U 85 ? A U 101 35 1 Y 1 A A 86 ? A A 102 36 1 Y 1 A U 87 ? A U 103 37 1 Y 1 A A 88 ? A A 104 38 1 Y 1 A U 89 ? A U 105 39 1 Y 1 A A 90 ? A A 106 40 1 Y 1 A C 91 ? A C 107 41 1 Y 1 A U 101 ? A U 117 42 1 Y 1 A A 102 ? A A 118 43 1 Y 1 A A 103 ? A A 119 44 1 Y 1 A A 104 ? A A 120 45 1 Y 1 A A 105 ? A A 121 46 1 Y 1 A U 106 ? A U 122 47 1 Y 1 A G 107 ? A G 123 48 1 Y 1 A U 108 ? A U 124 49 1 Y 1 A G 115 ? A G 131 50 1 Y 1 A U 116 ? A U 132 51 1 Y 1 A A 117 ? A A 133 52 1 Y 1 A C 118 ? A C 134 53 1 Y 1 A U 119 ? A U 135 54 1 Y 1 A G 120 ? A G 136 55 1 Y 1 A A 121 ? A A 137 56 1 Y 1 A A 122 ? A A 138 57 1 Y 1 A G 123 ? A G 139 58 1 Y 1 A C 124 ? A C 140 59 1 Y 1 A A 125 ? A A 141 60 1 Y 1 A A 126 ? A A 142 61 1 Y 1 A C 127 ? A C 143 62 1 Y 1 A A 128 ? A A 144 63 1 Y 1 A G 129 ? A G 145 64 1 Y 1 A C 130 ? A C 146 65 1 Y 1 A U 131 ? A U 147 66 1 Y 1 A A 132 ? A A 148 67 1 Y 1 A A 133 ? A A 149 68 1 Y 1 A A 134 ? A A 150 69 1 Y 1 A A 135 ? A A 151 70 1 Y 1 A U 136 ? A U 152 71 1 Y 1 A C 137 ? A C 153 72 1 Y 1 A G 138 ? A G 154 73 1 Y 1 A U 139 ? A U 155 74 1 Y 1 A U 140 ? A U 156 75 1 Y 1 A U 141 ? A U 157 76 1 Y 1 A C 142 ? A C 158 77 1 Y 1 A U 143 ? A U 159 78 1 Y 1 A G 144 ? A G 160 79 1 Y 1 A A 145 ? A A 161 80 1 Y 1 A G 146 ? A G 162 81 1 Y 1 A U 147 ? A U 163 82 1 Y 1 A U 148 ? A U 164 83 1 Y 1 A U 149 ? A U 165 84 1 Y 1 A G 150 ? A G 166 85 1 Y 1 A G 151 ? A G 167 86 1 Y 1 A U 152 ? A U 168 87 1 Y 1 A C 153 ? A C 169 88 1 Y 1 A G 154 ? A G 170 89 1 Y 1 A A 155 ? A A 171 90 1 Y 1 A C 156 ? A C 172 91 1 Y 1 A C 157 ? A C 173 92 1 Y 1 A U 158 ? A U 174 93 1 Y 1 A G 159 ? A G 175 94 1 Y 1 A C 160 ? A C 176 95 1 Y 1 A A 161 ? A A 177 96 1 Y 1 A G 162 ? A G 178 97 1 Y 1 A G 163 ? A G 179 98 1 Y 1 A C 164 ? A C 180 99 1 Y 1 A A 165 ? A A 181 100 1 Y 1 A U 166 ? A U 182 101 1 Y 1 A G 167 ? A G 183 102 1 Y 1 A C 168 ? A C 184 103 1 Y 1 A A 169 ? A A 185 104 1 Y 1 F MET 100 ? B MET 1 105 1 Y 1 F ARG 187 ? B ARG 88 106 1 Y 1 F ARG 188 ? B ARG 89 # _em_ctf_correction.id 1 _em_ctf_correction.details 'INDIVIDUAL PARTICLES' _em_ctf_correction.type ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.avg_electron_dose_per_image 20 _em_image_recording.film_or_detector_model 'KODAK SO-163 FILM' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id _em_software.imaging_id _em_software.fitting_id 1 O ? 'MODEL FITTING' ? ? ? 1 2 PyMOL ? 'MODEL FITTING' ? ? ? 1 3 IMAGIC 5 RECONSTRUCTION ? 1 ? ? # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration 0.5 _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? # loop_ _pdbx_coordinate_model.asym_id _pdbx_coordinate_model.type A 'P ATOMS ONLY' B 'CA ATOMS ONLY' #