HEADER HYDROLASE 10-SEP-07 2VBC TITLE CRYSTAL STRUCTURE OF THE NS3 PROTEASE-HELICASE FROM DENGUE VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DENGUE 4 NS3 FULL-LENGTH PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1475-2092; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PARTIAL POLYPROTEIN FOR NS2A AND NS2B, TYPE 4 PROTOTYPE DV4 COMPND 8 H241; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: RESIDUES 101-118; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS TYPE 4; SOURCE 3 ORGANISM_TAXID: 11070; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: CODON PLUS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET32B; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: DENGUE VIRUS TYPE 4; SOURCE 12 ORGANISM_TAXID: 11070; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 16 EXPRESSION_SYSTEM_VARIANT: CODON PLUS; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET32B KEYWDS TRANSMEMBRANE, RNA REPLICATION, NS2B-NS3 PROTEASE, NS3 BIFUNCTIONAL KEYWDS 2 ENZYME, NUCLEOTIDE-BINDING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.H.LUO,T.XU,C.HUNKE,G.GRUBER,S.G.VASUDEVAN,J.LESCAR REVDAT 5 13-DEC-23 2VBC 1 REMARK REVDAT 4 13-JUL-11 2VBC 1 VERSN REVDAT 3 24-FEB-09 2VBC 1 VERSN REVDAT 2 18-DEC-07 2VBC 1 JRNL REVDAT 1 30-OCT-07 2VBC 0 JRNL AUTH D.H.LUO,T.XU,C.HUNKE,G.GRUBER,S.G.VASUDEVAN,J.LESCAR JRNL TITL CRYSTAL STRUCTURE OF THE NS3 PROTEASE-HELICASE FROM DENGUE JRNL TITL 2 VIRUS. JRNL REF J.VIROL. V. 82 173 2008 JRNL REFN ISSN 0022-538X JRNL PMID 17942558 JRNL DOI 10.1128/JVI.01788-07 REMARK 2 REMARK 2 RESOLUTION. 3.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 11583 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 583 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 836 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 36 REMARK 3 BIN FREE R VALUE : 0.4110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4834 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 34 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.19000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : -0.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.13000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.577 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.523 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 65.182 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.849 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4942 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6694 ; 1.088 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 613 ; 5.129 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 223 ;37.085 ;23.229 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 858 ;18.328 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;15.252 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 730 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3763 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2440 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3340 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 175 ; 0.130 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 36 ; 0.150 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.131 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3126 ; 0.260 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4948 ; 0.480 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2044 ; 0.459 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1746 ; 0.809 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 180 REMARK 3 RESIDUE RANGE : B 49 B 63 REMARK 3 ORIGIN FOR THE GROUP (A): -20.6630 6.0217 -8.2454 REMARK 3 T TENSOR REMARK 3 T11: 0.4531 T22: 0.2918 REMARK 3 T33: 0.0963 T12: -0.0081 REMARK 3 T13: -0.1139 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 5.3723 L22: 3.7997 REMARK 3 L33: 7.2010 L12: -0.0311 REMARK 3 L13: 1.2881 L23: -0.6777 REMARK 3 S TENSOR REMARK 3 S11: -0.2275 S12: -0.0009 S13: 0.2836 REMARK 3 S21: 0.2924 S22: 0.4433 S23: 0.1412 REMARK 3 S31: -0.2706 S32: 0.2726 S33: -0.2159 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 181 A 315 REMARK 3 ORIGIN FOR THE GROUP (A): 8.2884 10.3376 20.4691 REMARK 3 T TENSOR REMARK 3 T11: -0.3643 T22: -0.1762 REMARK 3 T33: -0.3700 T12: 0.0711 REMARK 3 T13: 0.0506 T23: 0.0436 REMARK 3 L TENSOR REMARK 3 L11: 5.3871 L22: 8.8841 REMARK 3 L33: 6.2816 L12: -0.0975 REMARK 3 L13: -1.3488 L23: -0.9144 REMARK 3 S TENSOR REMARK 3 S11: 0.1824 S12: 0.7764 S13: -0.1555 REMARK 3 S21: -0.6266 S22: -0.3507 S23: -0.3357 REMARK 3 S31: 0.0711 S32: 0.1241 S33: 0.1683 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 316 A 618 REMARK 3 ORIGIN FOR THE GROUP (A): -4.7749 -1.9756 36.7301 REMARK 3 T TENSOR REMARK 3 T11: -0.3105 T22: -0.3487 REMARK 3 T33: -0.3221 T12: 0.0332 REMARK 3 T13: 0.1075 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 3.8285 L22: 2.9057 REMARK 3 L33: 2.7564 L12: 0.7449 REMARK 3 L13: 1.6635 L23: -0.7444 REMARK 3 S TENSOR REMARK 3 S11: 0.3450 S12: -0.1240 S13: -0.3289 REMARK 3 S21: 0.3801 S22: -0.1762 S23: 0.0981 REMARK 3 S31: -0.0036 S32: 0.2428 S33: -0.1688 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VBC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1290033731. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12236 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.150 REMARK 200 RESOLUTION RANGE LOW (A) : 88.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 2FOM AND 2BMF REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.12100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 GLY A 2 REMARK 465 ALA A 3 REMARK 465 LEU A 4 REMARK 465 TRP A 5 REMARK 465 ASP A 6 REMARK 465 VAL A 7 REMARK 465 PRO A 8 REMARK 465 SER A 9 REMARK 465 PRO A 10 REMARK 465 ALA A 11 REMARK 465 ALA A 12 REMARK 465 THR A 13 REMARK 465 GLN A 14 REMARK 465 LYS A 15 REMARK 465 ALA A 16 REMARK 465 THR A 17 REMARK 465 LEU A 18 REMARK 465 GLY B 45 REMARK 465 SER B 46 REMARK 465 ALA B 47 REMARK 465 MET B 48 REMARK 465 MET B 64 REMARK 465 ALA B 65 REMARK 465 ASP B 66 REMARK 465 GLY B 67 REMARK 465 GLY B 68 REMARK 465 GLY B 69 REMARK 465 GLY B 70 REMARK 465 SER B 71 REMARK 465 GLY B 72 REMARK 465 GLY B 73 REMARK 465 GLY B 74 REMARK 465 GLY B 75 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 28 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 30 CG CD1 CD2 REMARK 470 ARG A 73 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 87 CG OD1 OD2 REMARK 470 GLU A 92 CG CD OE1 OE2 REMARK 470 LYS A 157 CG CD CE NZ REMARK 470 SER A 158 OG REMARK 470 TYR A 161 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR A 176 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 63 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 33 86.48 64.64 REMARK 500 GLU A 43 -91.84 58.40 REMARK 500 HIS A 60 -141.38 -144.02 REMARK 500 SER A 68 -38.58 -138.45 REMARK 500 ASP A 75 74.23 59.19 REMARK 500 GLU A 92 84.44 55.49 REMARK 500 GLU A 93 -158.52 -151.04 REMARK 500 ILE A 100 74.82 -112.51 REMARK 500 THR A 118 -149.56 -97.87 REMARK 500 SER A 135 108.99 -49.20 REMARK 500 TYR A 150 86.41 -68.17 REMARK 500 VAL A 154 103.50 83.00 REMARK 500 ASP A 160 -92.58 49.60 REMARK 500 TYR A 161 -130.74 -98.96 REMARK 500 ARG A 170 131.72 -38.70 REMARK 500 ASP A 175 140.15 78.04 REMARK 500 GLU A 177 -179.19 62.86 REMARK 500 ASP A 192 59.62 -67.88 REMARK 500 LYS A 199 -175.97 130.52 REMARK 500 GLU A 255 80.90 -65.64 REMARK 500 VAL A 275 102.31 -55.71 REMARK 500 ALA A 286 23.98 -79.28 REMARK 500 ARG A 342 -157.75 -117.27 REMARK 500 ASN A 345 -65.77 -143.27 REMARK 500 PHE A 348 49.30 -89.58 REMARK 500 GLN A 355 61.41 -113.85 REMARK 500 ASP A 409 0.03 -60.73 REMARK 500 ARG A 418 74.92 -102.31 REMARK 500 PRO A 425 10.12 -67.85 REMARK 500 ASP A 496 23.18 -77.83 REMARK 500 GLU A 561 6.96 -66.10 REMARK 500 ARG A 617 47.67 -92.77 REMARK 500 ASP B 50 -10.13 -140.37 REMARK 500 REMARK 500 REMARK: NULL DBREF 2VBC A 1 618 UNP Q2TN89 Q2TN89_9FLAV 1475 2092 DBREF 2VBC B 49 66 UNP Q91EQ2 Q91EQ2_9FLAV 101 118 DBREF 2VBC B 67 75 PDB 2VBC 2VBC 67 75 SEQADV 2VBC GLY B 45 UNP Q91EQ2 EXPRESSION TAG SEQADV 2VBC SER B 46 UNP Q91EQ2 EXPRESSION TAG SEQADV 2VBC ALA B 47 UNP Q91EQ2 EXPRESSION TAG SEQADV 2VBC MET B 48 UNP Q91EQ2 EXPRESSION TAG SEQADV 2VBC ASP A 250 UNP Q2TN89 GLU 1724 CONFLICT SEQRES 1 A 618 SER GLY ALA LEU TRP ASP VAL PRO SER PRO ALA ALA THR SEQRES 2 A 618 GLN LYS ALA THR LEU SER GLU GLY VAL TYR ARG ILE MET SEQRES 3 A 618 GLN ARG GLY LEU PHE GLY LYS THR GLN VAL GLY VAL GLY SEQRES 4 A 618 ILE HIS MET GLU GLY VAL PHE HIS THR MET TRP HIS VAL SEQRES 5 A 618 THR ARG GLY SER VAL ILE CYS HIS GLU THR GLY ARG LEU SEQRES 6 A 618 GLU PRO SER TRP ALA ASP VAL ARG ASN ASP MET ILE SER SEQRES 7 A 618 TYR GLY GLY GLY TRP ARG LEU GLY ASP LYS TRP ASP LYS SEQRES 8 A 618 GLU GLU ASP VAL GLN VAL LEU ALA ILE GLU PRO GLY LYS SEQRES 9 A 618 ASN PRO LYS HIS VAL GLN THR LYS PRO GLY LEU PHE LYS SEQRES 10 A 618 THR LEU THR GLY GLU ILE GLY ALA VAL THR LEU ASP PHE SEQRES 11 A 618 LYS PRO GLY THR SER GLY SER PRO ILE ILE ASN LYS LYS SEQRES 12 A 618 GLY LYS VAL ILE GLY LEU TYR GLY ASN GLY VAL VAL THR SEQRES 13 A 618 LYS SER GLY ASP TYR VAL SER ALA ILE THR GLN ALA GLU SEQRES 14 A 618 ARG ILE GLY GLU PRO ASP TYR GLU VAL ASP GLU ASP ILE SEQRES 15 A 618 PHE ARG LYS LYS ARG LEU THR ILE MET ASP LEU HIS PRO SEQRES 16 A 618 GLY ALA GLY LYS THR LYS ARG ILE LEU PRO SER ILE VAL SEQRES 17 A 618 ARG GLU ALA LEU LYS ARG ARG LEU ARG THR LEU ILE LEU SEQRES 18 A 618 ALA PRO THR ARG VAL VAL ALA ALA GLU MET GLU GLU ALA SEQRES 19 A 618 LEU ARG GLY LEU PRO ILE ARG TYR GLN THR PRO ALA VAL SEQRES 20 A 618 LYS SER ASP HIS THR GLY ARG GLU ILE VAL ASP LEU MET SEQRES 21 A 618 CYS HIS ALA THR PHE THR THR ARG LEU LEU SER SER THR SEQRES 22 A 618 ARG VAL PRO ASN TYR ASN LEU ILE VAL MET ASP GLU ALA SEQRES 23 A 618 HIS PHE THR ASP PRO CYS SER VAL ALA ALA ARG GLY TYR SEQRES 24 A 618 ILE SER THR ARG VAL GLU MET GLY GLU ALA ALA ALA ILE SEQRES 25 A 618 PHE MET THR ALA THR PRO PRO GLY SER THR ASP PRO PHE SEQRES 26 A 618 PRO GLN SER ASN SER PRO ILE GLU ASP ILE GLU ARG GLU SEQRES 27 A 618 ILE PRO GLU ARG SER TRP ASN THR GLY PHE ASP TRP ILE SEQRES 28 A 618 THR ASP TYR GLN GLY LYS THR VAL TRP PHE VAL PRO SER SEQRES 29 A 618 ILE LYS ALA GLY ASN ASP ILE ALA ASN CYS LEU ARG LYS SEQRES 30 A 618 SER GLY LYS ARG VAL ILE GLN LEU SER ARG LYS THR PHE SEQRES 31 A 618 ASP THR GLU TYR PRO LYS THR LYS LEU THR ASP TRP ASP SEQRES 32 A 618 PHE VAL VAL THR THR ASP ILE SER GLU MET GLY ALA ASN SEQRES 33 A 618 PHE ARG ALA GLY ARG VAL ILE ASP PRO ARG ARG CYS LEU SEQRES 34 A 618 LYS PRO VAL ILE LEU THR ASP GLY PRO GLU ARG VAL ILE SEQRES 35 A 618 LEU ALA GLY PRO ILE PRO VAL THR PRO ALA SER ALA ALA SEQRES 36 A 618 GLN ARG ARG GLY ARG ILE GLY ARG ASN PRO ALA GLN GLU SEQRES 37 A 618 ASP ASP GLN TYR VAL PHE SER GLY ASP PRO LEU LYS ASN SEQRES 38 A 618 ASP GLU ASP HIS ALA HIS TRP THR GLU ALA LYS MET LEU SEQRES 39 A 618 LEU ASP ASN ILE TYR THR PRO GLU GLY ILE ILE PRO THR SEQRES 40 A 618 LEU PHE GLY PRO GLU ARG GLU LYS THR GLN ALA ILE ASP SEQRES 41 A 618 GLY GLU PHE ARG LEU ARG GLY GLU GLN ARG LYS THR PHE SEQRES 42 A 618 VAL GLU LEU MET ARG ARG GLY ASP LEU PRO VAL TRP LEU SEQRES 43 A 618 SER TYR LYS VAL ALA SER ALA GLY ILE SER TYR LYS ASP SEQRES 44 A 618 ARG GLU TRP CYS PHE THR GLY GLU ARG ASN ASN GLN ILE SEQRES 45 A 618 LEU GLU GLU ASN MET GLU VAL GLU ILE TRP THR ARG GLU SEQRES 46 A 618 GLY GLU LYS LYS LYS LEU ARG PRO LYS TRP LEU ASP ALA SEQRES 47 A 618 ARG VAL TYR ALA ASP PRO MET ALA LEU LYS ASP PHE LYS SEQRES 48 A 618 GLU PHE ALA SER GLY ARG LYS SEQRES 1 B 31 GLY SER ALA MET ALA ASP LEU SER LEU GLU LYS ALA ALA SEQRES 2 B 31 ASN VAL GLN TRP ASP GLU MET ALA ASP GLY GLY GLY GLY SEQRES 3 B 31 SER GLY GLY GLY GLY FORMUL 3 HOH *34(H2 O) HELIX 1 1 MET A 49 ARG A 54 1 6 HELIX 2 2 ARG A 202 ARG A 214 1 13 HELIX 3 3 THR A 224 LEU A 235 1 12 HELIX 4 4 HIS A 262 SER A 272 1 11 HELIX 5 5 ASP A 290 MET A 306 1 17 HELIX 6 6 PHE A 348 TYR A 354 1 7 HELIX 7 7 SER A 364 LYS A 377 1 14 HELIX 8 8 THR A 389 TYR A 394 1 6 HELIX 9 9 TYR A 394 THR A 400 1 7 HELIX 10 10 ASP A 409 MET A 413 5 5 HELIX 11 11 THR A 450 ARG A 460 1 11 HELIX 12 12 HIS A 485 ASP A 496 1 12 HELIX 13 13 PHE A 509 THR A 516 5 8 HELIX 14 14 GLU A 528 ARG A 539 1 12 HELIX 15 15 PRO A 543 SER A 552 1 10 HELIX 16 16 GLU A 567 GLN A 571 5 5 HELIX 17 17 ALA A 598 TYR A 601 5 4 HELIX 18 18 ASP A 603 GLY A 616 1 14 SHEET 1 AA 8 ARG A 64 LEU A 65 0 SHEET 2 AA 8 ILE A 58 CYS A 59 -1 O ILE A 58 N LEU A 65 SHEET 3 AA 8 LEU B 51 ALA B 57 1 O LEU B 51 N CYS A 59 SHEET 4 AA 8 GLY A 21 GLN A 27 -1 O VAL A 22 N ALA B 57 SHEET 5 AA 8 THR A 34 MET A 42 -1 O THR A 34 N GLN A 27 SHEET 6 AA 8 VAL A 45 THR A 48 -1 O VAL A 45 N MET A 42 SHEET 7 AA 8 MET A 76 TYR A 79 -1 O ILE A 77 N THR A 48 SHEET 8 AA 8 PRO A 67 ASP A 71 -1 N SER A 68 O SER A 78 SHEET 1 AB 7 LYS A 107 THR A 111 0 SHEET 2 AB 7 VAL A 95 ALA A 99 -1 O VAL A 95 N THR A 111 SHEET 3 AB 7 PRO A 138 ILE A 140 -1 O PRO A 138 N LEU A 98 SHEET 4 AB 7 VAL A 146 GLY A 151 -1 N ILE A 147 O ILE A 139 SHEET 5 AB 7 SER A 163 THR A 166 -1 O ALA A 164 N GLY A 151 SHEET 6 AB 7 GLU A 122 VAL A 126 -1 O GLY A 124 N ILE A 165 SHEET 7 AB 7 LEU A 115 LYS A 117 -1 O PHE A 116 N ILE A 123 SHEET 1 AC 6 LEU A 188 MET A 191 0 SHEET 2 AC 6 ALA A 310 MET A 314 1 O ALA A 311 N THR A 189 SHEET 3 AC 6 LEU A 280 ASP A 284 1 O ILE A 281 N ILE A 312 SHEET 4 AC 6 THR A 218 ALA A 222 1 O LEU A 219 N VAL A 282 SHEET 5 AC 6 VAL A 257 CYS A 261 1 O ASP A 258 N ILE A 220 SHEET 6 AC 6 ILE A 240 TYR A 242 1 O ARG A 241 N LEU A 259 SHEET 1 AD 6 ILE A 332 GLU A 336 0 SHEET 2 AD 6 ASP A 470 PHE A 474 1 O ASP A 470 N GLU A 333 SHEET 3 AD 6 ARG A 421 ASP A 424 1 O VAL A 422 N VAL A 473 SHEET 4 AD 6 THR A 358 PHE A 361 1 O VAL A 359 N ILE A 423 SHEET 5 AD 6 PHE A 404 THR A 407 1 O VAL A 405 N TRP A 360 SHEET 6 AD 6 VAL A 382 LEU A 385 1 O ILE A 383 N VAL A 406 SHEET 1 AE 2 ARG A 427 THR A 435 0 SHEET 2 AE 2 GLU A 439 PRO A 448 -1 O ARG A 440 N LEU A 434 SHEET 1 AF 2 LEU A 573 GLU A 574 0 SHEET 2 AF 2 MET A 577 GLU A 578 -1 O MET A 577 N GLU A 574 SHEET 1 AG 2 GLU A 580 TRP A 582 0 SHEET 2 AG 2 LYS A 588 LYS A 590 -1 O LYS A 589 N ILE A 581 CISPEP 1 GLY A 29 LEU A 30 0 1.49 CISPEP 2 PHE A 31 GLY A 32 0 -1.70 CISPEP 3 ASN A 152 GLY A 153 0 1.77 CISPEP 4 GLY A 153 VAL A 154 0 5.13 CISPEP 5 VAL A 154 VAL A 155 0 1.11 CISPEP 6 LYS A 157 SER A 158 0 -2.70 CISPEP 7 SER A 158 GLY A 159 0 -0.67 CISPEP 8 TYR A 161 VAL A 162 0 -5.15 CISPEP 9 ILE A 171 GLY A 172 0 0.11 CISPEP 10 GLY A 172 GLU A 173 0 4.74 CISPEP 11 GLU A 173 PRO A 174 0 -18.15 CISPEP 12 PRO A 174 ASP A 175 0 1.11 CISPEP 13 ASP A 175 TYR A 176 0 -7.58 CISPEP 14 GLU A 177 VAL A 178 0 3.72 CISPEP 15 GLY A 198 LYS A 199 0 -0.60 CISPEP 16 GLY A 445 PRO A 446 0 2.02 CRYST1 52.866 88.242 76.676 90.00 94.21 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018916 0.000000 0.001392 0.00000 SCALE2 0.000000 0.011332 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013077 0.00000