HEADER VIRAL PROTEIN 14-SEP-07 2VBM TITLE TAILSPIKE PROTEIN OF BACTERIOPHAGE SF6 COMPLEXED WITH TETRASACCHARIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAILSPIKE-PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 110-623 LACKING THE N-TERMINAL PUTATIVE HEAD- COMPND 5 BINDING DOMAIN; COMPND 6 SYNONYM: SF6 TAILSPIKE PROTEIN, TSP; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: ENDO-1,3-ALPHA-L-RHAMNOSIDASE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE SF6; SOURCE 3 ORGANISM_TAXID: 10761; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: D834 KEYWDS VIRAL ADHESION PROTEIN, VIRAL PROTEIN, HYDROLASE, TAILSPIKE, KEYWDS 2 ENDORHAMNOSIDASE, RIGHT-HANDED PARALLEL BETA-HELIX EXPDTA X-RAY DIFFRACTION AUTHOR J.J.MUELLER,S.BARBIRZ,A.FREIBERG,R.SECKLER,U.HEINEMANN REVDAT 8 13-DEC-23 2VBM 1 HETSYN LINK REVDAT 7 29-JUL-20 2VBM 1 COMPND REMARK HETNAM LINK REVDAT 7 2 1 SITE ATOM REVDAT 6 22-MAY-19 2VBM 1 REMARK LINK REVDAT 5 30-JAN-19 2VBM 1 REMARK REVDAT 4 24-NOV-09 2VBM 1 VERSN REVDAT 3 24-FEB-09 2VBM 1 VERSN REVDAT 2 20-MAY-08 2VBM 1 JRNL REMARK MASTER REVDAT 1 22-APR-08 2VBM 0 JRNL AUTH J.J.MULLER,S.BARBIRZ,K.HEINLE,A.FREIBERG,R.SECKLER, JRNL AUTH 2 U.HEINEMANN JRNL TITL AN INTERSUBUNIT ACTIVE SITE BETWEEN SUPERCOILED PARALLEL JRNL TITL 2 BETA HELICES IN THE TRIMERIC TAILSPIKE ENDORHAMNOSIDASE OF JRNL TITL 3 SHIGELLA FLEXNERI PHAGE SF6. JRNL REF STRUCTURE V. 16 766 2008 JRNL REFN ISSN 0969-2126 JRNL PMID 18462681 JRNL DOI 10.1016/J.STR.2008.01.019 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 39641 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2110 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3762 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1940 REMARK 3 BIN FREE R VALUE SET COUNT : 208 REMARK 3 BIN FREE R VALUE : 0.2410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3821 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 248 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.36000 REMARK 3 B22 (A**2) : 0.36000 REMARK 3 B33 (A**2) : -0.54000 REMARK 3 B12 (A**2) : 0.18000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.164 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.153 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.392 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.890 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3961 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3514 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5400 ; 1.362 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8130 ; 0.766 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 512 ; 6.767 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 168 ;33.978 ;24.762 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 615 ;12.676 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;12.960 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 632 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4472 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 773 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 700 ; 0.181 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3533 ; 0.187 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1996 ; 0.168 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2315 ; 0.095 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 246 ; 0.136 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.144 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 103 ; 0.221 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.149 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3260 ; 0.826 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4079 ; 1.108 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1649 ; 2.086 ; 4.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1321 ; 2.843 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 114 A 152 REMARK 3 ORIGIN FOR THE GROUP (A): 6.3097 64.8631 -38.4 REMARK 3 T TENSOR REMARK 3 T11: 0.2912 T22: 0.3476 REMARK 3 T33: 0.0982 T12: -0.0150 REMARK 3 T13: 0.0319 T23: 0.0777 REMARK 3 L TENSOR REMARK 3 L11: 2.4280 L22: 1.7454 REMARK 3 L33: 2.2717 L12: 0.1725 REMARK 3 L13: -0.0525 L23: 0.7841 REMARK 3 S TENSOR REMARK 3 S11: -0.1067 S12: -0.1066 S13: 0.2226 REMARK 3 S21: -0.2817 S22: 0.0472 S23: 0.0742 REMARK 3 S31: -0.1895 S32: 0.2570 S33: 0.0595 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 153 A 182 REMARK 3 ORIGIN FOR THE GROUP (A): 3.4591 33.7543 -26.4833 REMARK 3 T TENSOR REMARK 3 T11: 0.1734 T22: 0.1915 REMARK 3 T33: 0.0808 T12: 0.0413 REMARK 3 T13: 0.0101 T23: -0.0739 REMARK 3 L TENSOR REMARK 3 L11: 1.7747 L22: 2.1882 REMARK 3 L33: 1.6616 L12: 0.3190 REMARK 3 L13: -0.5972 L23: -1.4302 REMARK 3 S TENSOR REMARK 3 S11: -0.0059 S12: 0.0186 S13: -0.2020 REMARK 3 S21: -0.1163 S22: -0.0637 S23: -0.1126 REMARK 3 S31: -0.0351 S32: 0.1945 S33: 0.0696 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 183 A 219 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9026 40.2306 -23.6243 REMARK 3 T TENSOR REMARK 3 T11: 0.1247 T22: 0.0979 REMARK 3 T33: 0.0266 T12: 0.0138 REMARK 3 T13: 0.0204 T23: -0.0559 REMARK 3 L TENSOR REMARK 3 L11: 3.1980 L22: 1.3986 REMARK 3 L33: 1.2467 L12: 0.7983 REMARK 3 L13: 0.1612 L23: -0.0640 REMARK 3 S TENSOR REMARK 3 S11: 0.0598 S12: 0.0153 S13: -0.0215 REMARK 3 S21: -0.0737 S22: -0.0345 S23: -0.0352 REMARK 3 S31: 0.0113 S32: 0.0414 S33: -0.0253 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 220 A 237 REMARK 3 ORIGIN FOR THE GROUP (A): -7.0852 42.4863 -21.3489 REMARK 3 T TENSOR REMARK 3 T11: 0.0866 T22: 0.0892 REMARK 3 T33: 0.0049 T12: 0.0157 REMARK 3 T13: -0.0026 T23: -0.0329 REMARK 3 L TENSOR REMARK 3 L11: 2.7408 L22: 3.4240 REMARK 3 L33: 1.3470 L12: -1.1575 REMARK 3 L13: 0.4538 L23: -0.2996 REMARK 3 S TENSOR REMARK 3 S11: -0.1309 S12: 0.0556 S13: -0.0192 REMARK 3 S21: 0.0158 S22: 0.1448 S23: 0.1926 REMARK 3 S31: -0.0163 S32: -0.1199 S33: -0.0139 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 238 A 245 REMARK 3 ORIGIN FOR THE GROUP (A): 17.0035 38.2584 -18.0534 REMARK 3 T TENSOR REMARK 3 T11: 0.1164 T22: 0.0893 REMARK 3 T33: -0.0133 T12: 0.0344 REMARK 3 T13: 0.0296 T23: -0.0387 REMARK 3 L TENSOR REMARK 3 L11: 19.5292 L22: 2.9425 REMARK 3 L33: 1.7275 L12: 7.4646 REMARK 3 L13: 3.1798 L23: 0.8868 REMARK 3 S TENSOR REMARK 3 S11: 0.1530 S12: 0.3212 S13: -0.0255 REMARK 3 S21: 0.1604 S22: -0.2007 S23: 0.1761 REMARK 3 S31: 0.1106 S32: 0.1079 S33: 0.0476 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 246 A 288 REMARK 3 ORIGIN FOR THE GROUP (A): 5.1164 46.6390 -17.8779 REMARK 3 T TENSOR REMARK 3 T11: 0.0591 T22: 0.0493 REMARK 3 T33: 0.0027 T12: -0.0061 REMARK 3 T13: 0.0139 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 1.0287 L22: 0.9767 REMARK 3 L33: 0.6270 L12: -0.3396 REMARK 3 L13: 0.0366 L23: -0.0149 REMARK 3 S TENSOR REMARK 3 S11: -0.0174 S12: 0.1293 S13: -0.0087 REMARK 3 S21: -0.1660 S22: -0.0022 S23: -0.0450 REMARK 3 S31: -0.0162 S32: 0.0301 S33: 0.0196 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 289 A 319 REMARK 3 ORIGIN FOR THE GROUP (A): 10.2591 44.6437 -7.9003 REMARK 3 T TENSOR REMARK 3 T11: 0.0175 T22: 0.0368 REMARK 3 T33: 0.0349 T12: -0.0011 REMARK 3 T13: 0.0229 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.2189 L22: 0.7387 REMARK 3 L33: 0.4855 L12: 0.2439 REMARK 3 L13: 0.2937 L23: 0.4479 REMARK 3 S TENSOR REMARK 3 S11: 0.0122 S12: 0.0329 S13: 0.0692 REMARK 3 S21: -0.0488 S22: -0.0372 S23: -0.0563 REMARK 3 S31: 0.0645 S32: 0.0501 S33: 0.0250 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 320 A 324 REMARK 3 ORIGIN FOR THE GROUP (A): 13.6274 27.1231 -3.8909 REMARK 3 T TENSOR REMARK 3 T11: 0.0189 T22: -0.0129 REMARK 3 T33: 0.0171 T12: 0.0276 REMARK 3 T13: 0.0481 T23: -0.0381 REMARK 3 L TENSOR REMARK 3 L11: 14.7669 L22: 3.3688 REMARK 3 L33: 1.1299 L12: -6.8167 REMARK 3 L13: 0.4873 L23: 0.2724 REMARK 3 S TENSOR REMARK 3 S11: 0.0453 S12: 0.0029 S13: -0.4552 REMARK 3 S21: -0.1231 S22: 0.1510 S23: 0.6391 REMARK 3 S31: 0.2118 S32: -0.1095 S33: -0.1963 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 325 A 340 REMARK 3 ORIGIN FOR THE GROUP (A): 9.6704 49.2592 -3.8027 REMARK 3 T TENSOR REMARK 3 T11: 0.0423 T22: 0.0039 REMARK 3 T33: -0.0165 T12: -0.0145 REMARK 3 T13: 0.0197 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 4.1650 L22: 0.5082 REMARK 3 L33: 0.5867 L12: 0.5003 REMARK 3 L13: 0.2908 L23: -0.4403 REMARK 3 S TENSOR REMARK 3 S11: -0.0207 S12: 0.0741 S13: 0.2234 REMARK 3 S21: 0.0023 S22: -0.0576 S23: -0.0023 REMARK 3 S31: -0.0516 S32: 0.0322 S33: 0.0782 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 341 A 363 REMARK 3 ORIGIN FOR THE GROUP (A): 3.4927 35.3130 -4.3893 REMARK 3 T TENSOR REMARK 3 T11: 0.0568 T22: -0.0217 REMARK 3 T33: -0.0217 T12: 0.0020 REMARK 3 T13: 0.0211 T23: -0.0307 REMARK 3 L TENSOR REMARK 3 L11: 6.7017 L22: 1.4694 REMARK 3 L33: 1.3365 L12: -0.5540 REMARK 3 L13: -0.6877 L23: 0.2905 REMARK 3 S TENSOR REMARK 3 S11: -0.0653 S12: -0.0356 S13: 0.0991 REMARK 3 S21: -0.1226 S22: 0.0121 S23: -0.0705 REMARK 3 S31: 0.0713 S32: 0.0015 S33: 0.0532 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 364 A 429 REMARK 3 ORIGIN FOR THE GROUP (A): 1.1500 43.5065 5.8079 REMARK 3 T TENSOR REMARK 3 T11: -0.0106 T22: -0.0215 REMARK 3 T33: -0.0103 T12: -0.0051 REMARK 3 T13: 0.0122 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.9550 L22: 0.9190 REMARK 3 L33: 0.7035 L12: 0.1157 REMARK 3 L13: 0.0175 L23: 0.1514 REMARK 3 S TENSOR REMARK 3 S11: -0.0108 S12: -0.0049 S13: -0.0349 REMARK 3 S21: -0.0153 S22: -0.0233 S23: -0.0006 REMARK 3 S31: 0.0158 S32: -0.0010 S33: 0.0341 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 430 A 438 REMARK 3 ORIGIN FOR THE GROUP (A): -3.3863 36.5100 12.5048 REMARK 3 T TENSOR REMARK 3 T11: -0.0048 T22: -0.0274 REMARK 3 T33: -0.0244 T12: 0.0201 REMARK 3 T13: 0.0272 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 13.0522 L22: 3.0252 REMARK 3 L33: 2.6980 L12: 3.0792 REMARK 3 L13: 1.5690 L23: -1.7260 REMARK 3 S TENSOR REMARK 3 S11: -0.0791 S12: 0.1309 S13: 0.1237 REMARK 3 S21: 0.3090 S22: 0.0076 S23: 0.1668 REMARK 3 S31: 0.2412 S32: 0.1374 S33: 0.0714 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 439 A 472 REMARK 3 ORIGIN FOR THE GROUP (A): -2.8828 44.6884 12.5048 REMARK 3 T TENSOR REMARK 3 T11: -0.0144 T22: -0.0422 REMARK 3 T33: -0.0296 T12: 0.0031 REMARK 3 T13: 0.0287 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 2.1364 L22: 1.3001 REMARK 3 L33: 1.0288 L12: 0.1559 REMARK 3 L13: -0.1021 L23: -0.0219 REMARK 3 S TENSOR REMARK 3 S11: 0.0107 S12: 0.0129 S13: 0.0763 REMARK 3 S21: -0.0188 S22: 0.0221 S23: -0.0466 REMARK 3 S31: -0.0008 S32: -0.0328 S33: -0.0328 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 473 A 492 REMARK 3 ORIGIN FOR THE GROUP (A): 5.8353 48.0059 17.8370 REMARK 3 T TENSOR REMARK 3 T11: -0.0378 T22: -0.0221 REMARK 3 T33: -0.0142 T12: 0.0135 REMARK 3 T13: -0.0089 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.6138 L22: 0.3218 REMARK 3 L33: 0.5120 L12: 0.3573 REMARK 3 L13: 0.0954 L23: 0.0883 REMARK 3 S TENSOR REMARK 3 S11: -0.0801 S12: -0.0091 S13: -0.0512 REMARK 3 S21: 0.0268 S22: 0.0262 S23: -0.0056 REMARK 3 S31: 0.0969 S32: 0.0559 S33: 0.0539 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 493 A 517 REMARK 3 ORIGIN FOR THE GROUP (A): -4.9343 49.8065 20.4161 REMARK 3 T TENSOR REMARK 3 T11: 0.0199 T22: -0.0170 REMARK 3 T33: -0.0129 T12: 0.0007 REMARK 3 T13: 0.0020 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.7082 L22: 1.0997 REMARK 3 L33: 1.2409 L12: -0.5034 REMARK 3 L13: -0.2984 L23: -0.6728 REMARK 3 S TENSOR REMARK 3 S11: 0.0041 S12: 0.0099 S13: -0.0464 REMARK 3 S21: 0.1542 S22: -0.0198 S23: -0.0774 REMARK 3 S31: -0.1427 S32: -0.0684 S33: 0.0157 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 518 A 555 REMARK 3 ORIGIN FOR THE GROUP (A): -6.0993 48.3796 24.0134 REMARK 3 T TENSOR REMARK 3 T11: -0.0006 T22: -0.0074 REMARK 3 T33: 0.0097 T12: -0.0102 REMARK 3 T13: 0.0088 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 1.8322 L22: 1.9208 REMARK 3 L33: 1.2570 L12: 0.0651 REMARK 3 L13: 0.4038 L23: 0.1758 REMARK 3 S TENSOR REMARK 3 S11: -0.1345 S12: 0.0912 S13: 0.0538 REMARK 3 S21: -0.1133 S22: 0.0179 S23: 0.0342 REMARK 3 S31: -0.0324 S32: 0.0112 S33: 0.1165 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 556 A 574 REMARK 3 ORIGIN FOR THE GROUP (A): -13.3870 43.9523 43.3652 REMARK 3 T TENSOR REMARK 3 T11: 0.0744 T22: 0.0561 REMARK 3 T33: 0.1099 T12: -0.0314 REMARK 3 T13: 0.0422 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 0.8307 L22: 4.1847 REMARK 3 L33: 5.4195 L12: 0.1324 REMARK 3 L13: -0.6872 L23: 3.7997 REMARK 3 S TENSOR REMARK 3 S11: -0.1236 S12: -0.1242 S13: -0.0757 REMARK 3 S21: 0.1858 S22: -0.0039 S23: -0.0513 REMARK 3 S31: 0.4585 S32: -0.2422 S33: 0.1275 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 575 A 580 REMARK 3 ORIGIN FOR THE GROUP (A): -9.9965 45.1626 39.7981 REMARK 3 T TENSOR REMARK 3 T11: 0.0246 T22: 0.0905 REMARK 3 T33: -0.0165 T12: 0.0293 REMARK 3 T13: 0.0287 T23: -0.0477 REMARK 3 L TENSOR REMARK 3 L11: 11.7326 L22: 6.0704 REMARK 3 L33: 11.7324 L12: 5.5792 REMARK 3 L13: 11.0386 L23: 3.1039 REMARK 3 S TENSOR REMARK 3 S11: -0.4757 S12: -0.8380 S13: 0.3829 REMARK 3 S21: -0.3526 S22: -0.1939 S23: 0.0852 REMARK 3 S31: -0.3299 S32: -0.9690 S33: 0.6696 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 581 A 601 REMARK 3 ORIGIN FOR THE GROUP (A): -6.2658 56.5141 50.5835 REMARK 3 T TENSOR REMARK 3 T11: 0.0643 T22: 0.1117 REMARK 3 T33: 0.0710 T12: 0.0131 REMARK 3 T13: 0.0084 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 2.6026 L22: 5.3022 REMARK 3 L33: 2.6073 L12: 2.7438 REMARK 3 L13: 0.0555 L23: 0.4854 REMARK 3 S TENSOR REMARK 3 S11: 0.0119 S12: -0.1508 S13: -0.0773 REMARK 3 S21: -0.0032 S22: -0.0421 S23: -0.0512 REMARK 3 S31: -0.0186 S32: 0.1171 S33: 0.0302 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 602 A 622 REMARK 3 ORIGIN FOR THE GROUP (A): -7.3034 49.8883 37.0304 REMARK 3 T TENSOR REMARK 3 T11: 0.0292 T22: 0.0711 REMARK 3 T33: 0.0569 T12: -0.0077 REMARK 3 T13: -0.0149 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 1.9508 L22: 3.3907 REMARK 3 L33: 4.4562 L12: 0.2287 REMARK 3 L13: -1.5852 L23: 1.5665 REMARK 3 S TENSOR REMARK 3 S11: -0.1316 S12: 0.0639 S13: -0.1269 REMARK 3 S21: -0.3746 S22: -0.0183 S23: 0.0961 REMARK 3 S31: -0.1317 S32: -0.0967 S33: 0.1499 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VBM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1290033777. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39641 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 47.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.22000 REMARK 200 FOR SHELL : 7.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2VBK REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION HANGING DROP, 20 DEGR. REMARK 280 CELSIUS; DROP: 3 MICROL RESERVOIR AND 3 MICROL PROTEIN SOLUTION; REMARK 280 RESERVOIR: 0.1M MES, PH6.5, 16% PEG8000, 20MM MNCL2; PROTEIN: REMARK 280 10MG/ML, 10MM NA-PHOSPHATE,PH7.0, OCTASACCHARIDE CONCENTRATION/ REMARK 280 PROTEIN CONCENTATION 10:1; CRYOCONDITION: 0.1M MES, PH6.5, 25% REMARK 280 PEG8000, 20MM MNCL2, 15% ETHYLENGLYCOL, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.67900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.52748 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 60.92167 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 47.67900 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 27.52748 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 60.92167 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 47.67900 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 27.52748 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.92167 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.05497 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 121.84333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 55.05497 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 121.84333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 55.05497 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 121.84333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICALLY ACTIVE UNIT IS A TRIMER. REMARK 300 THE THREEFOLD AXIS IS THE C-AXIS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 25270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 47.67900 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 82.58245 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -47.67900 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 82.58245 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 875 LIES ON A SPECIAL POSITION. REMARK 375 MN MN A 876 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 109 REMARK 465 PRO A 110 REMARK 465 ASP A 111 REMARK 465 GLN A 112 REMARK 465 PHE A 113 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 172 -47.17 -140.32 REMARK 500 ASN A 262 -13.38 71.46 REMARK 500 GLU A 293 59.94 73.27 REMARK 500 GLU A 295 -71.16 -72.00 REMARK 500 SER A 328 72.67 62.39 REMARK 500 SER A 360 -61.04 75.19 REMARK 500 ALA A 367 61.16 60.06 REMARK 500 SER A 445 -158.95 -143.97 REMARK 500 SER A 473 -3.54 72.96 REMARK 500 ASP A 487 -96.42 -101.05 REMARK 500 CYS A 545 154.69 89.27 REMARK 500 SER A 546 -168.62 -129.41 REMARK 500 ASN A 552 125.12 -172.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 877 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 135 OD1 REMARK 620 2 HIS A 153 ND1 106.5 REMARK 620 3 HOH A2246 O 80.7 170.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 875 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 394 OE2 REMARK 620 2 GLU A 394 OE2 100.5 REMARK 620 3 GLU A 394 OE2 101.0 98.7 REMARK 620 4 HOH A2117 O 174.7 84.1 80.8 REMARK 620 5 HOH A2117 O 87.1 81.5 171.6 90.9 REMARK 620 6 HOH A2117 O 83.7 172.8 86.2 91.5 92.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 876 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 394 OE1 REMARK 620 2 GLU A 394 OE1 102.2 REMARK 620 3 GLU A 394 OE1 101.7 103.1 REMARK 620 4 HOH A2245 O 168.3 87.9 69.8 REMARK 620 5 HOH A2245 O 68.6 168.1 86.5 102.1 REMARK 620 6 HOH A2245 O 86.5 69.6 170.2 102.8 101.6 REMARK 620 N 1 2 3 4 5 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VBE RELATED DB: PDB REMARK 900 TAILSPIKE PROTEIN OF BACTERIOPHAGE SF6 REMARK 900 RELATED ID: 2VBK RELATED DB: PDB REMARK 900 NATIVE TAILSPIKE PROTEIN OF BACTERIOPHAGE SF6 REMARK 999 REMARK 999 SEQUENCE REMARK 999 PROTEIN LACKS N-TERMINAL PUTATIVE HEAD-BINDING DOMAIN DBREF 2VBM A 109 622 UNP Q9XJP3 TSPE_BPSFV 110 623 SEQRES 1 A 514 ASP PRO ASP GLN PHE GLY PRO ASP LEU ILE GLU GLN LEU SEQRES 2 A 514 ALA GLN SER GLY LYS TYR SER GLN ASP ASN THR LYS GLY SEQRES 3 A 514 ASP ALA MET ILE GLY VAL LYS GLN PRO LEU PRO LYS ALA SEQRES 4 A 514 VAL LEU ARG THR GLN HIS ASP LYS ASN LYS GLU ALA ILE SEQRES 5 A 514 SER ILE LEU ASP PHE GLY VAL ILE ASP ASP GLY VAL THR SEQRES 6 A 514 ASP ASN TYR GLN ALA ILE GLN ASN ALA ILE ASP ALA VAL SEQRES 7 A 514 ALA SER LEU PRO SER GLY GLY GLU LEU PHE ILE PRO ALA SEQRES 8 A 514 SER ASN GLN ALA VAL GLY TYR ILE VAL GLY SER THR LEU SEQRES 9 A 514 LEU ILE PRO GLY GLY VAL ASN ILE ARG GLY VAL GLY LYS SEQRES 10 A 514 ALA SER GLN LEU ARG ALA LYS SER GLY LEU THR GLY SER SEQRES 11 A 514 VAL LEU ARG LEU SER TYR ASP SER ASP THR ILE GLY ARG SEQRES 12 A 514 TYR LEU ARG ASN ILE ARG VAL THR GLY ASN ASN THR CYS SEQRES 13 A 514 ASN GLY ILE ASP THR ASN ILE THR ALA GLU ASP SER VAL SEQRES 14 A 514 ILE ARG GLN VAL TYR GLY TRP VAL PHE ASP ASN VAL MET SEQRES 15 A 514 VAL ASN GLU VAL GLU THR ALA TYR LEU MET GLN GLY LEU SEQRES 16 A 514 TRP HIS SER LYS PHE ILE ALA CYS GLN ALA GLY THR CYS SEQRES 17 A 514 ARG VAL GLY LEU HIS PHE LEU GLY GLN CYS VAL SER VAL SEQRES 18 A 514 SER VAL SER SER CYS HIS PHE SER ARG GLY ASN TYR SER SEQRES 19 A 514 ALA ASP GLU SER PHE GLY ILE ARG ILE GLN PRO GLN THR SEQRES 20 A 514 TYR ALA TRP SER SER GLU ALA VAL ARG SER GLU ALA ILE SEQRES 21 A 514 ILE LEU ASP SER GLU THR MET CYS ILE GLY PHE LYS ASN SEQRES 22 A 514 ALA VAL TYR VAL HIS ASP CYS LEU ASP LEU HIS MET GLU SEQRES 23 A 514 GLN LEU ASP LEU ASP TYR CYS GLY SER THR GLY VAL VAL SEQRES 24 A 514 ILE GLU ASN VAL ASN GLY GLY PHE SER PHE SER ASN SER SEQRES 25 A 514 TRP ILE ALA ALA ASP ALA ASP GLY THR GLU GLN PHE THR SEQRES 26 A 514 GLY ILE TYR PHE ARG THR PRO THR SER THR GLN SER HIS SEQRES 27 A 514 LYS ILE VAL SER GLY VAL HIS ILE ASN THR ALA ASN LYS SEQRES 28 A 514 ASN THR ALA ALA ASN ASN GLN SER ILE ALA ILE GLU GLN SEQRES 29 A 514 SER ALA ILE PHE VAL PHE VAL SER GLY CYS THR LEU THR SEQRES 30 A 514 GLY ASP GLU TRP ALA VAL ASN ILE VAL ASP ILE ASN GLU SEQRES 31 A 514 CYS VAL SER PHE ASP LYS CYS ILE PHE ASN LYS PRO LEU SEQRES 32 A 514 ARG TYR LEU ARG SER GLY GLY VAL SER VAL THR ASP CYS SEQRES 33 A 514 TYR LEU ALA GLY ILE THR GLU VAL GLN LYS PRO GLU GLY SEQRES 34 A 514 ARG TYR ASN THR TYR ARG GLY CYS SER GLY VAL PRO SER SEQRES 35 A 514 VAL ASN GLY ILE ILE ASN VAL PRO VAL ALA VAL GLY ALA SEQRES 36 A 514 THR SER GLY SER ALA ALA ILE PRO ASN PRO GLY ASN LEU SEQRES 37 A 514 THR TYR ARG VAL ARG SER LEU PHE GLY ASP PRO ALA SER SEQRES 38 A 514 SER GLY ASP LYS VAL SER VAL SER GLY VAL THR ILE ASN SEQRES 39 A 514 VAL THR ARG PRO SER PRO VAL GLY VAL ALA LEU PRO SER SEQRES 40 A 514 MET VAL GLU TYR LEU ALA ILE HET RAM B 1 11 HET RAM B 2 10 HET NAG B 3 14 HET RAM B 4 10 HET PO4 A 872 5 HET PO4 A 873 5 HET MG A 875 1 HET MN A 876 1 HET MN A 877 1 HETNAM RAM ALPHA-L-RHAMNOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM PO4 PHOSPHATE ION HETNAM MG MAGNESIUM ION HETNAM MN MANGANESE (II) ION HETSYN RAM ALPHA-L-RHAMNOSE; 6-DEOXY-ALPHA-L-MANNOPYRANOSE; L- HETSYN 2 RAM RHAMNOSE; RHAMNOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 RAM 3(C6 H12 O5) FORMUL 2 NAG C8 H15 N O6 FORMUL 3 PO4 2(O4 P 3-) FORMUL 5 MG MG 2+ FORMUL 6 MN 2(MN 2+) FORMUL 8 HOH *248(H2 O) HELIX 1 1 GLY A 114 GLN A 123 1 10 HELIX 2 2 SER A 124 SER A 128 5 5 HELIX 3 3 LYS A 133 MET A 137 5 5 HELIX 4 4 GLN A 152 LYS A 157 1 6 HELIX 5 5 ILE A 162 PHE A 165 5 4 HELIX 6 6 ASN A 175 SER A 188 1 14 HELIX 7 7 ASP A 586 SER A 590 5 5 SHEET 1 AA 2 GLY A 139 VAL A 140 0 SHEET 2 AA 2 ARG A 150 THR A 151 -1 O ARG A 150 N VAL A 140 SHEET 1 AB14 GLY A 193 PHE A 196 0 SHEET 2 AB14 VAL A 218 ARG A 221 1 N ASN A 219 O GLY A 193 SHEET 3 AB14 ARG A 251 ARG A 254 1 O TYR A 252 N ILE A 220 SHEET 4 AB14 VAL A 281 ASP A 287 1 O VAL A 285 N LEU A 253 SHEET 5 AB14 LEU A 303 ILE A 309 1 O LYS A 307 N PHE A 286 SHEET 6 AB14 VAL A 327 SER A 332 1 O VAL A 327 N HIS A 305 SHEET 7 AB14 SER A 365 ASP A 371 1 O GLU A 366 N SER A 328 SHEET 8 AB14 CYS A 388 GLU A 394 1 O LEU A 389 N ALA A 367 SHEET 9 AB14 ASN A 412 SER A 418 1 O ASN A 412 N ASP A 390 SHEET 10 AB14 LYS A 447 SER A 450 1 O ILE A 448 N PHE A 417 SHEET 11 AB14 VAL A 477 SER A 480 1 O PHE A 478 N VAL A 449 SHEET 12 AB14 VAL A 500 ASP A 503 1 O SER A 501 N VAL A 479 SHEET 13 AB14 VAL A 519 THR A 522 1 O SER A 520 N PHE A 502 SHEET 14 AB14 THR A 541 ARG A 543 1 O THR A 541 N VAL A 521 SHEET 1 AC14 TYR A 206 VAL A 208 0 SHEET 2 AC14 GLN A 228 ALA A 231 1 O ARG A 230 N VAL A 208 SHEET 3 AC14 ARG A 257 THR A 259 1 O ARG A 257 N LEU A 229 SHEET 4 AC14 MET A 290 ASN A 292 1 O MET A 290 N VAL A 258 SHEET 5 AC14 GLN A 312 GLY A 314 1 O GLN A 312 N VAL A 291 SHEET 6 AC14 HIS A 335 SER A 337 1 O HIS A 335 N ALA A 313 SHEET 7 AC14 THR A 374 ILE A 377 1 O MET A 375 N PHE A 336 SHEET 8 AC14 LEU A 396 CYS A 401 1 O ASP A 399 N GLY A 378 SHEET 9 AC14 SER A 418 ALA A 424 1 O TRP A 421 N LEU A 398 SHEET 10 AC14 SER A 450 ASN A 455 1 O GLY A 451 N SER A 420 SHEET 11 AC14 THR A 483 LEU A 484 1 O THR A 483 N ILE A 454 SHEET 12 AC14 ILE A 506 PHE A 507 1 O ILE A 506 N LEU A 484 SHEET 13 AC14 TYR A 525 ALA A 527 1 O TYR A 525 N PHE A 507 SHEET 14 AC14 SER A 546 VAL A 548 1 O SER A 546 N LEU A 526 SHEET 1 AD13 LEU A 212 ILE A 214 0 SHEET 2 AD13 SER A 238 LEU A 242 1 O VAL A 239 N LEU A 212 SHEET 3 AD13 ASN A 265 THR A 269 1 O ASN A 265 N VAL A 239 SHEET 4 AD13 THR A 296 GLN A 301 1 O THR A 296 N GLY A 266 SHEET 5 AD13 VAL A 318 LEU A 323 1 O VAL A 318 N ALA A 297 SHEET 6 AD13 PHE A 347 GLN A 352 1 O PHE A 347 N GLY A 319 SHEET 7 AD13 ASN A 381 VAL A 385 1 O ASN A 381 N GLY A 348 SHEET 8 AD13 THR A 404 ILE A 408 1 O THR A 404 N ALA A 382 SHEET 9 AD13 THR A 433 PHE A 437 1 O THR A 433 N GLY A 405 SHEET 10 AD13 GLN A 466 ILE A 470 1 O GLN A 466 N GLY A 434 SHEET 11 AD13 VAL A 491 VAL A 494 1 O ASN A 492 N ILE A 470 SHEET 12 AD13 LEU A 511 LEU A 514 1 O ARG A 512 N ILE A 493 SHEET 13 AD13 ILE A 529 VAL A 532 1 O THR A 530 N TYR A 513 SHEET 1 AE 3 ASN A 552 VAL A 557 0 SHEET 2 AE 3 SER A 615 ALA A 621 -1 O SER A 615 N VAL A 557 SHEET 3 AE 3 TYR A 578 SER A 582 -1 O ARG A 579 N LEU A 620 SHEET 1 AF 3 SER A 565 ALA A 569 0 SHEET 2 AF 3 THR A 600 THR A 604 -1 O ILE A 601 N ALA A 568 SHEET 3 AF 3 LYS A 593 SER A 597 -1 O LYS A 593 N THR A 604 LINK O2 RAM B 1 C1 RAM B 2 1555 1555 1.42 LINK O2 RAM B 2 C1 NAG B 3 1555 1555 1.43 LINK O3 NAG B 3 C1 RAM B 4 1555 1555 1.42 LINK OD1 ASP A 135 MN MN A 877 1555 1555 2.06 LINK ND1 HIS A 153 MN MN A 877 1555 1555 2.09 LINK OE2 GLU A 394 MG MG A 875 1555 1555 1.99 LINK OE2 GLU A 394 MG MG A 875 2665 1555 2.06 LINK OE2 GLU A 394 MG MG A 875 3565 1555 2.04 LINK OE1 GLU A 394 MN MN A 876 3565 1555 2.17 LINK OE1 GLU A 394 MN MN A 876 1555 1555 2.13 LINK OE1 GLU A 394 MN MN A 876 2665 1555 2.14 LINK MG MG A 875 O HOH A2117 1555 3565 2.11 LINK MG MG A 875 O HOH A2117 1555 2665 2.06 LINK MG MG A 875 O HOH A2117 1555 1555 2.05 LINK MN MN A 876 O HOH A2245 1555 1555 2.43 LINK MN MN A 876 O HOH A2245 1555 2665 2.47 LINK MN MN A 876 O HOH A2245 1555 3565 2.45 LINK MN MN A 877 O HOH A2246 1555 1555 2.27 CISPEP 1 VAL A 548 PRO A 549 0 -2.32 CRYST1 95.358 95.358 182.765 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010487 0.006055 0.000000 0.00000 SCALE2 0.000000 0.012109 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005472 0.00000