HEADER TRANSFERASE 14-SEP-07 2VBQ TITLE STRUCTURE OF AAC(6')-IY IN COMPLEX WITH BISUBSTRATE ANALOG COA-S- TITLE 2 MONOMETHYL-ACETYLNEAMINE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOGLYCOSIDE 6'-N-ACETYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AMINOGLYCOSIDE ACETYLTRANSFERASE IY; COMPND 5 EC: 2.3.1.82; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA CHOLERAESUIS; SOURCE 3 ORGANISM_TAXID: 591; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS AMINOGLYCOSIDE, ACETYLTRANSFERASE, DRUG RESISTANCE, BISUBSTRATE KEYWDS 2 INHIBITOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,M.L.MAGALHAES,L.FREIBURGER,F.GAO,K.AUCLAIR,J.S.BLANCHARD REVDAT 7 08-MAY-24 2VBQ 1 LINK REVDAT 6 11-MAR-20 2VBQ 1 REMARK REVDAT 5 06-MAR-19 2VBQ 1 REMARK REVDAT 4 05-JUL-17 2VBQ 1 REMARK REVDAT 3 24-FEB-09 2VBQ 1 VERSN REVDAT 2 15-JAN-08 2VBQ 1 JRNL REVDAT 1 08-JAN-08 2VBQ 0 JRNL AUTH M.L.MAGALHAES,M.W.VETTING,F.GAO,L.FREIBURGER,K.AUCLAIR, JRNL AUTH 2 J.S.BLANCHARD JRNL TITL KINETIC AND STRUCTURAL ANALYSIS OF BISUBSTRATE INHIBITION OF JRNL TITL 2 THE SALMONELLA ENTERICA AMINOGLYCOSIDE JRNL TITL 3 6'-N-ACETYLTRANSFERASE. JRNL REF BIOCHEMISTRY V. 47 579 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18095712 JRNL DOI 10.1021/BI701957C REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 88.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 20546 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1102 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1365 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2310 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 155 REMARK 3 SOLVENT ATOMS : 219 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : -0.56000 REMARK 3 B33 (A**2) : 0.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.19000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.195 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.172 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.702 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2524 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3428 ; 1.562 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 289 ; 5.947 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 123 ;34.138 ;23.252 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 397 ;16.498 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;22.006 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 373 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1896 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1089 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1670 ; 0.296 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 209 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 45 ; 0.203 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.161 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1497 ; 0.970 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2308 ; 1.580 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1175 ; 2.326 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1120 ; 3.607 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. N-TERMINAL THROMBIN CLEAVABLE 6X-HIS TAG CLEAVED REMARK 3 PRIOR TO CRYSTALLIZATION (PET28 ORIGIN). REMARK 4 REMARK 4 2VBQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1290033816. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 190 REMARK 200 PH : 5.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : CONFOCAL BLUE REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU-MSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21649 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.19000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (15MG/ML, 10 MM TEA PH 8.0, REMARK 280 100 MM AMMONIUM SULFATE), PRECIPITANT (20 % PEG6000, 100 MM MES REMARK 280 PH 5.75) VAPOUR DIFFUSION UNDER OIL, VAPOR DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 42.48200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.29950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 42.48200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.29950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2011 O HOH B 2013 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2022 O HOH B 2037 3445 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL B 76 CB - CA - C ANGL. DEV. = -11.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 25 109.38 -57.81 REMARK 500 PRO A 26 143.71 -39.58 REMARK 500 HIS B 25 128.03 -33.71 REMARK 500 THR B 135 -67.05 -108.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 2-(BIPHENYL-4-SULFONYL)-1,2,3, REMARK 600 4-TETRAHYDRO-ISOQUINOLINE-3-CARBOXYLIC ACID (BSJ): REMARK 600 COA-S-MONOMETHYL-ACETYLNEAMINE COENZYMEA COVALENTLY LINKED REMARK 600 TO N-ACETYLNEAMINE THROUGH A METHYL LINKER NOVEL HETROGEN REMARK 600 REQUIRES NEW HET CODE REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1001 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 0 NE2 REMARK 620 2 ASP A 2 OD1 114.8 REMARK 620 3 HIS A 42 NE2 111.3 99.2 REMARK 620 4 HIS A 64 NE2 106.0 113.8 111.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BSJ A1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BSJ B1146 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1S3Z RELATED DB: PDB REMARK 900 AMINOGLYCOSIDE N-ACETYLTRANSFERASE AAC(6')-IY IN COMPLEXWITH COA REMARK 900 AND RIBOSTAMYCIN REMARK 900 RELATED ID: 1S5K RELATED DB: PDB REMARK 900 AMINOGLYCOSIDE N-ACETYLTRANSFERASE AAC(6')-IY IN COMPLEXWITH COA REMARK 900 AND N-TERMINAL HIS(6 )-TAG (CRYSTAL FORM 1) REMARK 900 RELATED ID: 1S60 RELATED DB: PDB REMARK 900 AMINOGLYCOSIDE N-ACETYLTRANSFERASE AAC(6')-IY IN COMPLEXWITH COA REMARK 900 AND N-TERMINAL HIS(6 )-TAG (CRYSTAL FORM 2) REMARK 999 REMARK 999 SEQUENCE REMARK 999 PROTEIN CONTAINS N-TERMINAL TAG DBREF 2VBQ A -19 0 PDB 2VBQ 2VBQ -19 0 DBREF 2VBQ A 1 145 UNP Q9R381 Q9R381_SALEN 1 145 DBREF 2VBQ B -19 0 PDB 2VBQ 2VBQ -19 0 DBREF 2VBQ B 1 145 UNP Q9R381 Q9R381_SALEN 1 145 SEQRES 1 A 165 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 165 LEU VAL PRO ARG GLY SER HIS MET ASP ILE ARG GLN MET SEQRES 3 A 165 ASN LYS THR HIS LEU GLU HIS TRP ARG GLY LEU ARG LYS SEQRES 4 A 165 GLN LEU TRP PRO GLY HIS PRO ASP ASP ALA HIS LEU ALA SEQRES 5 A 165 ASP GLY GLU GLU ILE LEU GLN ALA ASP HIS LEU ALA SER SEQRES 6 A 165 PHE ILE ALA MET ALA ASP GLY VAL ALA ILE GLY PHE ALA SEQRES 7 A 165 ASP ALA SER ILE ARG HIS ASP TYR VAL ASN GLY CYS ASP SEQRES 8 A 165 SER SER PRO VAL VAL PHE LEU GLU GLY ILE PHE VAL LEU SEQRES 9 A 165 PRO SER PHE ARG GLN ARG GLY VAL ALA LYS GLN LEU ILE SEQRES 10 A 165 ALA ALA VAL GLN ARG TRP GLY THR ASN LYS GLY CYS ARG SEQRES 11 A 165 GLU MET ALA SER ASP THR SER PRO GLU ASN THR ILE SER SEQRES 12 A 165 GLN LYS VAL HIS GLN ALA LEU GLY PHE GLU GLU THR GLU SEQRES 13 A 165 ARG VAL ILE PHE TYR ARG LYS ARG CYS SEQRES 1 B 165 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 165 LEU VAL PRO ARG GLY SER HIS MET ASP ILE ARG GLN MET SEQRES 3 B 165 ASN LYS THR HIS LEU GLU HIS TRP ARG GLY LEU ARG LYS SEQRES 4 B 165 GLN LEU TRP PRO GLY HIS PRO ASP ASP ALA HIS LEU ALA SEQRES 5 B 165 ASP GLY GLU GLU ILE LEU GLN ALA ASP HIS LEU ALA SER SEQRES 6 B 165 PHE ILE ALA MET ALA ASP GLY VAL ALA ILE GLY PHE ALA SEQRES 7 B 165 ASP ALA SER ILE ARG HIS ASP TYR VAL ASN GLY CYS ASP SEQRES 8 B 165 SER SER PRO VAL VAL PHE LEU GLU GLY ILE PHE VAL LEU SEQRES 9 B 165 PRO SER PHE ARG GLN ARG GLY VAL ALA LYS GLN LEU ILE SEQRES 10 B 165 ALA ALA VAL GLN ARG TRP GLY THR ASN LYS GLY CYS ARG SEQRES 11 B 165 GLU MET ALA SER ASP THR SER PRO GLU ASN THR ILE SER SEQRES 12 B 165 GLN LYS VAL HIS GLN ALA LEU GLY PHE GLU GLU THR GLU SEQRES 13 B 165 ARG VAL ILE PHE TYR ARG LYS ARG CYS HET BSJ A1000 74 HET NI A1001 1 HET GOL A1002 6 HET BSJ B1146 74 HETNAM BSJ (3R,9Z)-17-[(2R,3S,4R,5R,6R)-5-AMINO-6-{[(1R,2R,3S,4R, HETNAM 2 BSJ 6S)-4,6-DIAMINO-2,3-DIHYDROXYCYCLOHEXYL]OXY}-3,4- HETNAM 3 BSJ DIHYDROXYTETRAHYDRO-2H-PYRAN-2-YL]-3-HYDROXY-2,2- HETNAM 4 BSJ DIMETHYL-4,8,15-TRIOXO-12-THIA-5,9,16-TRIAZAHEPTADEC- HETNAM 5 BSJ 9-EN-1-YL [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-4- HETNAM 6 BSJ HYDROXY-3-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]METHYL HETNAM 7 BSJ DIHYDROGEN DIPHOSPHATE HETNAM NI NICKEL (II) ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 BSJ 2(C36 H62 N11 O23 P3 S) FORMUL 4 NI NI 2+ FORMUL 5 GOL C3 H8 O3 FORMUL 7 HOH *219(H2 O) HELIX 1 1 ASN A 7 THR A 9 5 3 HELIX 2 2 HIS A 10 TRP A 22 1 13 HELIX 3 3 PRO A 26 ALA A 40 1 15 HELIX 4 4 PRO A 85 ARG A 88 5 4 HELIX 5 5 GLY A 91 LYS A 107 1 17 HELIX 6 6 ASN A 120 LEU A 130 1 11 HELIX 7 7 ASN B 7 THR B 9 5 3 HELIX 8 8 HIS B 10 TRP B 22 1 13 HELIX 9 9 PRO B 26 ALA B 40 1 15 HELIX 10 10 PRO B 85 ARG B 88 5 4 HELIX 11 11 GLY B 91 LYS B 107 1 17 HELIX 12 12 ASN B 120 LEU B 130 1 11 SHEET 1 AA12 ASP A 2 GLN A 5 0 SHEET 2 AA12 LEU A 43 ALA A 50 -1 O ILE A 47 N ARG A 4 SHEET 3 AA12 VAL A 53 ARG A 63 -1 O VAL A 53 N ALA A 50 SHEET 4 AA12 VAL A 75 VAL A 83 -1 O VAL A 75 N ARG A 63 SHEET 5 AA12 GLU A 111 THR A 116 1 O GLU A 111 N VAL A 76 SHEET 6 AA12 GLU B 133 ARG B 144 -1 O ILE B 139 N THR A 116 SHEET 7 AA12 GLU A 133 ARG A 144 -1 O GLU A 133 N ARG B 142 SHEET 8 AA12 GLU B 111 THR B 116 -1 O MET B 112 N LYS A 143 SHEET 9 AA12 VAL B 75 VAL B 83 1 O VAL B 76 N ALA B 113 SHEET 10 AA12 VAL B 53 ARG B 63 -1 O PHE B 57 N PHE B 82 SHEET 11 AA12 LEU B 43 ALA B 50 -1 O ALA B 44 N ALA B 60 SHEET 12 AA12 ILE B 3 GLN B 5 -1 O ARG B 4 N ILE B 47 LINK NE2 HIS A 0 NI NI A1001 1555 1555 1.94 LINK OD1 ASP A 2 NI NI A1001 1555 1555 2.03 LINK NE2 HIS A 42 NI NI A1001 4545 1555 2.03 LINK NE2 HIS A 64 NI NI A1001 4545 1555 1.98 CISPEP 1 SER A 73 PRO A 74 0 2.85 CISPEP 2 SER B 73 PRO B 74 0 5.30 SITE 1 AC1 38 LEU A 21 TRP A 22 HIS A 25 GLU A 79 SITE 2 AC1 38 GLY A 80 ILE A 81 PHE A 82 VAL A 83 SITE 3 AC1 38 ARG A 88 GLN A 89 ARG A 90 GLY A 91 SITE 4 AC1 38 VAL A 92 ALA A 93 LYS A 94 ASP A 115 SITE 5 AC1 38 THR A 116 ASN A 120 ILE A 122 SER A 123 SITE 6 AC1 38 VAL A 126 ALA A 129 LEU A 130 HOH A2057 SITE 7 AC1 38 HOH A2094 HOH A2095 HOH A2096 HOH A2098 SITE 8 AC1 38 HOH A2099 HOH A2100 HOH A2101 HOH A2102 SITE 9 AC1 38 HOH A2104 TYR B 66 ASN B 68 ARG B 110 SITE 10 AC1 38 GLU B 136 VAL B 138 SITE 1 AC2 4 HIS A 0 ASP A 2 HIS A 42 HIS A 64 SITE 1 AC3 41 TYR A 66 ASN A 68 GLU A 136 VAL A 138 SITE 2 AC3 41 TRP B 22 HIS B 25 GLU B 79 GLY B 80 SITE 3 AC3 41 ILE B 81 PHE B 82 VAL B 83 ARG B 88 SITE 4 AC3 41 GLN B 89 ARG B 90 GLY B 91 VAL B 92 SITE 5 AC3 41 ALA B 93 LYS B 94 ASP B 115 THR B 116 SITE 6 AC3 41 ASN B 120 ILE B 122 SER B 123 VAL B 126 SITE 7 AC3 41 HIS B 127 ALA B 129 LEU B 130 HOH B2032 SITE 8 AC3 41 HOH B2049 HOH B2097 HOH B2098 HOH B2100 SITE 9 AC3 41 HOH B2103 HOH B2104 HOH B2105 HOH B2106 SITE 10 AC3 41 HOH B2107 HOH B2108 HOH B2109 HOH B2110 SITE 11 AC3 41 HOH B2111 SITE 1 AC4 7 GLU A 36 HIS A 42 LEU A 43 SER A 61 SITE 2 AC4 7 HOH A2108 HIS B 64 ASP B 65 CRYST1 84.964 44.599 88.387 90.00 93.92 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011770 0.000000 0.000806 0.00000 SCALE2 0.000000 0.022422 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011340 0.00000