HEADER TRANSFERASE 16-SEP-07 2VBU TITLE RIBOFLAVIN KINASE MJ0056 FROM METHANOCALDOCOCCUS JANNASCHII IN COMPLEX TITLE 2 WITH CDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOFLAVIN KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UNCHARACTERIZED PROTEIN MJ0056; COMPND 5 EC: 2.7.1.161; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, CRADLE-LOOP BARREL, CTP-DEPENDENT KINASE, FMN EXPDTA X-RAY DIFFRACTION AUTHOR M.D.HARTMANN,M.AMMELBURG,S.DJURANOVIC,J.MARTIN,A.N.LUPAS,K.ZETH REVDAT 5 13-DEC-23 2VBU 1 LINK REVDAT 4 24-FEB-09 2VBU 1 VERSN REVDAT 3 03-JUN-08 2VBU 1 COMPND REMARK REVDAT 2 25-DEC-07 2VBU 1 JRNL REVDAT 1 20-NOV-07 2VBU 0 JRNL AUTH M.AMMELBURG,M.D.HARTMANN,S.DJURANOVIC,V.ALVA,K.K.KORETKE, JRNL AUTH 2 J.MARTIN,G.SAUER,V.TRUFFAULT,K.ZETH,A.N.LUPAS,M.COLES JRNL TITL A CTP-DEPENDENT ARCHAEAL RIBOFLAVIN KINASE FORMS A BRIDGE IN JRNL TITL 2 THE EVOLUTION OF CRADLE-LOOP BARRELS. JRNL REF STRUCTURE V. 15 1577 2007 JRNL REFN ISSN 0969-2126 JRNL PMID 18073108 JRNL DOI 10.1016/J.STR.2007.09.027 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 18949 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 997 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1393 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2030 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1065 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 152 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.60000 REMARK 3 B22 (A**2) : -0.60000 REMARK 3 B33 (A**2) : 1.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.085 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.095 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1149 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 825 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1548 ; 1.551 ; 2.050 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2028 ; 3.826 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 130 ; 5.712 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 47 ;32.208 ;24.894 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 228 ;14.808 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;11.557 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 174 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1171 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 218 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 197 ; 0.188 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 835 ; 0.226 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 553 ; 0.187 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 587 ; 0.115 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 133 ; 0.142 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.118 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 28 ; 0.261 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.089 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 652 ; 3.775 ;12.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1067 ; 5.493 ;16.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 497 ; 8.221 ;24.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 481 ;11.901 ;36.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VBU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1290033825. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20274 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 33.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.820 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2VBT REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% V/V MPD, 100 MM IMIDAZOLE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 52.42250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 52.42250 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 16.40100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.42250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 8.20050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.42250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.60150 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.42250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.42250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 16.40100 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 52.42250 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 24.60150 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 52.42250 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 8.20050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C3 MRD A1135 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 133 REMARK 465 LYS A 134 REMARK 465 ASP A 135 REMARK 465 GLU A 136 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1134 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 43 O REMARK 620 2 THR A 43 OG1 87.3 REMARK 620 3 ASN A 45 OD1 87.1 90.6 REMARK 620 4 CDP A1133 O2B 90.5 177.8 89.7 REMARK 620 5 CDP A1133 O1A 91.2 91.6 177.1 88.0 REMARK 620 6 HOH A2146 O 174.5 89.1 97.1 93.0 84.8 REMARK 620 N 1 2 3 4 5 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CDP A1133 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1134 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A1135 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A1136 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A1137 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2P3M RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF MJ0056 REMARK 900 RELATED ID: 2VBT RELATED DB: PDB REMARK 900 RIBOFLAVIN KINASE MJ0056 FROM METHANOCALDOCOCCUS JANNASCHII IN REMARK 900 COMPLEX WITH CDP AND PO4 REMARK 900 RELATED ID: 2VBS RELATED DB: PDB REMARK 900 RIBOFLAVIN KINASE MJ0056 FROM METHANOCALDOCOCCUS JANNASCHII IN REMARK 900 COMPLEX WITH PO4 REMARK 900 RELATED ID: 2VBV RELATED DB: PDB REMARK 900 RIBOFLAVIN KINASE MJ0056 FROM METHANOCALDOCOCCUS JANNASCHII IN REMARK 900 COMPLEX WITH CDP AND FMN DBREF 2VBU A 1 136 UNP Q60365 Y056_METJA 1 136 SEQRES 1 A 136 MET VAL LYS LEU MET ILE ILE GLU GLY GLU VAL VAL SER SEQRES 2 A 136 GLY LEU GLY GLU GLY ARG TYR PHE LEU SER LEU PRO PRO SEQRES 3 A 136 TYR LYS GLU ILE PHE LYS LYS ILE LEU GLY PHE GLU PRO SEQRES 4 A 136 TYR GLU GLY THR LEU ASN LEU LYS LEU ASP ARG GLU PHE SEQRES 5 A 136 ASP ILE ASN LYS PHE LYS TYR ILE GLU THR GLU ASP PHE SEQRES 6 A 136 GLU PHE ASN GLY LYS ARG PHE PHE GLY VAL LYS VAL LEU SEQRES 7 A 136 PRO ILE LYS ILE LEU ILE GLY ASN LYS LYS ILE ASP GLY SEQRES 8 A 136 ALA ILE VAL VAL PRO LYS LYS THR TYR HIS SER SER GLU SEQRES 9 A 136 ILE ILE GLU ILE ILE ALA PRO MET LYS LEU ARG GLU GLN SEQRES 10 A 136 PHE ASN LEU LYS ASP GLY ASP VAL ILE LYS ILE LEU ILE SEQRES 11 A 136 LYS GLY ASP LYS ASP GLU HET CDP A1133 25 HET MG A1134 1 HET MRD A1135 8 HET MRD A1136 8 HET MRD A1137 8 HETNAM CDP CYTIDINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL FORMUL 2 CDP C9 H15 N3 O11 P2 FORMUL 3 MG MG 2+ FORMUL 4 MRD 3(C6 H14 O2) FORMUL 7 HOH *152(H2 O) HELIX 1 1 GLY A 16 SER A 23 1 8 HELIX 2 2 LEU A 24 GLY A 36 1 13 HELIX 3 3 ASP A 53 PHE A 57 5 5 HELIX 4 4 LYS A 113 PHE A 118 1 6 SHEET 1 AA16 LEU A 4 VAL A 12 0 SHEET 2 AA16 VAL A 125 LYS A 131 -1 O ILE A 126 N GLY A 9 SHEET 3 AA16 VAL A 75 ILE A 84 -1 O LYS A 81 N LEU A 129 SHEET 4 AA16 ILE A 60 GLU A 61 -1 O ILE A 60 N VAL A 77 SHEET 5 AA16 LEU A 44 PHE A 52 0 SHEET 6 AA16 LEU A 4 VAL A 12 -1 O GLU A 10 N LYS A 47 SHEET 7 AA16 ILE A 60 GLU A 61 0 SHEET 8 AA16 VAL A 75 ILE A 84 -1 O VAL A 77 N ILE A 60 SHEET 9 AA16 VAL A 75 ILE A 84 0 SHEET 10 AA16 ILE A 60 GLU A 61 -1 O ILE A 60 N VAL A 77 SHEET 11 AA16 LYS A 87 PRO A 96 0 SHEET 12 AA16 VAL A 75 ILE A 84 1 O LYS A 76 N VAL A 95 SHEET 13 AA16 SER A 103 ILE A 109 0 SHEET 14 AA16 LEU A 44 PHE A 52 -1 O LEU A 44 N ILE A 108 SHEET 15 AA16 VAL A 125 LYS A 131 0 SHEET 16 AA16 LEU A 4 VAL A 12 -1 O MET A 5 N ILE A 130 SHEET 1 AB 2 PHE A 65 PHE A 67 0 SHEET 2 AB 2 LYS A 70 PHE A 72 -1 O LYS A 70 N PHE A 67 LINK O THR A 43 MG MG A1134 1555 1555 2.03 LINK OG1 THR A 43 MG MG A1134 1555 1555 2.05 LINK OD1 ASN A 45 MG MG A1134 1555 1555 2.14 LINK O2B CDP A1133 MG MG A1134 1555 1555 2.00 LINK O1A CDP A1133 MG MG A1134 1555 1555 2.07 LINK MG MG A1134 O HOH A2146 1555 1555 2.07 SITE 1 AC1 23 GLY A 14 LEU A 15 GLY A 16 GLU A 17 SITE 2 AC1 23 GLY A 18 ARG A 19 TYR A 40 GLY A 42 SITE 3 AC1 23 THR A 43 LEU A 44 ASN A 45 MET A 112 SITE 4 AC1 23 LYS A 113 LEU A 114 ARG A 115 MG A1134 SITE 5 AC1 23 HOH A2058 HOH A2145 HOH A2146 HOH A2147 SITE 6 AC1 23 HOH A2148 HOH A2149 HOH A2150 SITE 1 AC2 4 THR A 43 ASN A 45 CDP A1133 HOH A2146 SITE 1 AC3 2 GLU A 17 TYR A 20 SITE 1 AC4 7 LEU A 22 TYR A 27 VAL A 94 PRO A 96 SITE 2 AC4 7 GLU A 107 HOH A2151 HOH A2152 SITE 1 AC5 5 LEU A 4 ILE A 80 LEU A 129 LYS A 131 SITE 2 AC5 5 HOH A2098 CRYST1 104.845 104.845 32.802 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009538 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009538 0.000000 0.00000 SCALE3 0.000000 0.000000 0.030486 0.00000