data_2VD2 # _entry.id 2VD2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2VD2 PDBE EBI-34002 WWPDB D_1290034002 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2VD2 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2007-09-28 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lohkamp, B.' 1 'Riboldi-Tunniclife, A.' 2 'Lapthorn, A.J.' 3 # _citation.id primary _citation.title 'The Crystal Structure of Hisg from B. Subtilis' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Lohkamp, B.' 1 primary 'Riboldi-Tunniclife, A.' 2 primary 'Lapthorn, A.J.' 3 # _cell.entry_id 2VD2 _cell.length_a 85.937 _cell.length_b 85.937 _cell.length_c 75.948 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VD2 _symmetry.space_group_name_H-M 'P 43 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'ATP PHOSPHORIBOSYLTRANSFERASE' _entity.formula_weight 23718.172 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 2.4.2.17 _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'ATP-PRTASE, ATP-PRT' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AMGKLLTMAMPKGRIFEEAAGLLRQAGYRLPEEFEDSRKLIIDVPEENLRFILAKPMDVTTYVEHGVADVGIAGKDVMLE EERDVYEVLDLNISKCHLAVAGLPNTDWSGVAPRIATKYPNVASSYFREQGEQVEIIKLNGSIELAPLIGLADRIVDIVS TGQTLKENGLVETEHICDITSRFIVNPVSYRMKDDVIDEMASRLSLVVEGETAK ; _entity_poly.pdbx_seq_one_letter_code_can ;AMGKLLTMAMPKGRIFEEAAGLLRQAGYRLPEEFEDSRKLIIDVPEENLRFILAKPMDVTTYVEHGVADVGIAGKDVMLE EERDVYEVLDLNISKCHLAVAGLPNTDWSGVAPRIATKYPNVASSYFREQGEQVEIIKLNGSIELAPLIGLADRIVDIVS TGQTLKENGLVETEHICDITSRFIVNPVSYRMKDDVIDEMASRLSLVVEGETAK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 MET n 1 3 GLY n 1 4 LYS n 1 5 LEU n 1 6 LEU n 1 7 THR n 1 8 MET n 1 9 ALA n 1 10 MET n 1 11 PRO n 1 12 LYS n 1 13 GLY n 1 14 ARG n 1 15 ILE n 1 16 PHE n 1 17 GLU n 1 18 GLU n 1 19 ALA n 1 20 ALA n 1 21 GLY n 1 22 LEU n 1 23 LEU n 1 24 ARG n 1 25 GLN n 1 26 ALA n 1 27 GLY n 1 28 TYR n 1 29 ARG n 1 30 LEU n 1 31 PRO n 1 32 GLU n 1 33 GLU n 1 34 PHE n 1 35 GLU n 1 36 ASP n 1 37 SER n 1 38 ARG n 1 39 LYS n 1 40 LEU n 1 41 ILE n 1 42 ILE n 1 43 ASP n 1 44 VAL n 1 45 PRO n 1 46 GLU n 1 47 GLU n 1 48 ASN n 1 49 LEU n 1 50 ARG n 1 51 PHE n 1 52 ILE n 1 53 LEU n 1 54 ALA n 1 55 LYS n 1 56 PRO n 1 57 MET n 1 58 ASP n 1 59 VAL n 1 60 THR n 1 61 THR n 1 62 TYR n 1 63 VAL n 1 64 GLU n 1 65 HIS n 1 66 GLY n 1 67 VAL n 1 68 ALA n 1 69 ASP n 1 70 VAL n 1 71 GLY n 1 72 ILE n 1 73 ALA n 1 74 GLY n 1 75 LYS n 1 76 ASP n 1 77 VAL n 1 78 MET n 1 79 LEU n 1 80 GLU n 1 81 GLU n 1 82 GLU n 1 83 ARG n 1 84 ASP n 1 85 VAL n 1 86 TYR n 1 87 GLU n 1 88 VAL n 1 89 LEU n 1 90 ASP n 1 91 LEU n 1 92 ASN n 1 93 ILE n 1 94 SER n 1 95 LYS n 1 96 CYS n 1 97 HIS n 1 98 LEU n 1 99 ALA n 1 100 VAL n 1 101 ALA n 1 102 GLY n 1 103 LEU n 1 104 PRO n 1 105 ASN n 1 106 THR n 1 107 ASP n 1 108 TRP n 1 109 SER n 1 110 GLY n 1 111 VAL n 1 112 ALA n 1 113 PRO n 1 114 ARG n 1 115 ILE n 1 116 ALA n 1 117 THR n 1 118 LYS n 1 119 TYR n 1 120 PRO n 1 121 ASN n 1 122 VAL n 1 123 ALA n 1 124 SER n 1 125 SER n 1 126 TYR n 1 127 PHE n 1 128 ARG n 1 129 GLU n 1 130 GLN n 1 131 GLY n 1 132 GLU n 1 133 GLN n 1 134 VAL n 1 135 GLU n 1 136 ILE n 1 137 ILE n 1 138 LYS n 1 139 LEU n 1 140 ASN n 1 141 GLY n 1 142 SER n 1 143 ILE n 1 144 GLU n 1 145 LEU n 1 146 ALA n 1 147 PRO n 1 148 LEU n 1 149 ILE n 1 150 GLY n 1 151 LEU n 1 152 ALA n 1 153 ASP n 1 154 ARG n 1 155 ILE n 1 156 VAL n 1 157 ASP n 1 158 ILE n 1 159 VAL n 1 160 SER n 1 161 THR n 1 162 GLY n 1 163 GLN n 1 164 THR n 1 165 LEU n 1 166 LYS n 1 167 GLU n 1 168 ASN n 1 169 GLY n 1 170 LEU n 1 171 VAL n 1 172 GLU n 1 173 THR n 1 174 GLU n 1 175 HIS n 1 176 ILE n 1 177 CYS n 1 178 ASP n 1 179 ILE n 1 180 THR n 1 181 SER n 1 182 ARG n 1 183 PHE n 1 184 ILE n 1 185 VAL n 1 186 ASN n 1 187 PRO n 1 188 VAL n 1 189 SER n 1 190 TYR n 1 191 ARG n 1 192 MET n 1 193 LYS n 1 194 ASP n 1 195 ASP n 1 196 VAL n 1 197 ILE n 1 198 ASP n 1 199 GLU n 1 200 MET n 1 201 ALA n 1 202 SER n 1 203 ARG n 1 204 LEU n 1 205 SER n 1 206 LEU n 1 207 VAL n 1 208 VAL n 1 209 GLU n 1 210 GLY n 1 211 GLU n 1 212 THR n 1 213 ALA n 1 214 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'SUBTILIS 168' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'BACILLUS SUBTILIS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1423 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 23857 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2VD2 1 ? ? 2VD2 ? 2 UNP HIS1_BACSU 1 ? ? O34520 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2VD2 A 1 ? 1 ? 2VD2 0 ? 0 ? 0 0 2 2 2VD2 A 2 ? 214 ? O34520 1 ? 213 ? 1 213 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2VD2 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.11 _exptl_crystal.density_percent_sol 60.12 _exptl_crystal.description NONE # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type ESRF _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.0 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2VD2 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 2.80 _reflns.number_obs 36000 _reflns.number_all ? _reflns.percent_possible_obs 89.0 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.00 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2VD2 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.ls_number_reflns_obs 6285 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.57 _refine.ls_d_res_high 2.85 _refine.ls_percent_reflns_obs 100.0 _refine.ls_R_factor_obs 0.237 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.236 _refine.ls_R_factor_R_free 0.266 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.600 _refine.ls_number_reflns_R_free 306 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.945 _refine.correlation_coeff_Fo_to_Fc_free 0.943 _refine.B_iso_mean 36.52 _refine.aniso_B[1][1] 0.18000 _refine.aniso_B[2][2] 0.18000 _refine.aniso_B[3][3] -0.36000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct OTHER _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.386 _refine.overall_SU_ML 0.434 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 54.556 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1611 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1611 _refine_hist.d_res_high 2.85 _refine_hist.d_res_low 19.57 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.013 0.022 ? 1601 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 1033 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.642 1.979 ? 2183 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.943 3.000 ? 2534 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 9.266 5.000 ? 211 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.077 25.538 ? 65 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 19.405 15.000 ? 258 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 22.461 15.000 ? 7 'X-RAY DIFFRACTION' ? r_chiral_restr 0.080 0.200 ? 265 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1804 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 290 'X-RAY DIFFRACTION' ? r_nbd_refined 0.271 0.200 ? 601 'X-RAY DIFFRACTION' ? r_nbd_other 0.216 0.200 ? 1256 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.203 0.200 ? 843 'X-RAY DIFFRACTION' ? r_nbtor_other 0.095 0.200 ? 918 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.183 0.200 ? 93 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.256 0.200 ? 20 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.237 0.200 ? 24 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.116 0.200 ? 3 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.354 1.500 ? 1121 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.578 2.000 ? 1696 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 0.867 3.000 ? 584 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 1.393 4.500 ? 487 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.85 _refine_ls_shell.d_res_low 2.92 _refine_ls_shell.number_reflns_R_work 315 _refine_ls_shell.R_factor_R_work 0.3580 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.3420 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 9 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2VD2 _struct.title 'The crystal structure of HisG from B. subtilis' _struct.pdbx_descriptor 'ATP PHOSPHORIBOSYLTRANSFERASE (E.C.2.4.2.17)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2VD2 _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'HISG, TRANSFERASE, GLYCOSYLTRANSFERASE, HISTIDINE BIOSYNTHESIS, AMINO-ACID BIOSYNTHESIS, ATP PHOSPHORIBOSYL TRANSFERASE' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ILE A 15 ? GLY A 27 ? ILE A 14 GLY A 26 1 ? 13 HELX_P HELX_P2 2 PRO A 31 ? GLU A 35 ? PRO A 30 GLU A 34 5 ? 5 HELX_P HELX_P3 3 PRO A 45 ? GLU A 47 ? PRO A 44 GLU A 46 5 ? 3 HELX_P HELX_P4 4 MET A 57 ? GLY A 66 ? MET A 56 GLY A 65 1 ? 10 HELX_P HELX_P5 5 LYS A 75 ? GLU A 80 ? LYS A 74 GLU A 79 1 ? 6 HELX_P HELX_P6 6 TYR A 119 ? GLY A 131 ? TYR A 118 GLY A 130 1 ? 13 HELX_P HELX_P7 7 GLU A 144 ? ILE A 149 ? GLU A 143 ILE A 148 1 ? 6 HELX_P HELX_P8 8 ASN A 186 ? THR A 212 ? ASN A 185 THR A 211 1 ? 27 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 6 ? AB ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? parallel AA 3 4 ? parallel AA 4 5 ? anti-parallel AA 5 6 ? anti-parallel AB 1 2 ? parallel AB 2 3 ? parallel AB 3 4 ? anti-parallel AB 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ILE A 41 ? VAL A 44 ? ILE A 40 VAL A 43 AA 2 LEU A 49 ? ALA A 54 ? LEU A 48 ALA A 53 AA 3 LEU A 6 ? PRO A 11 ? LEU A 5 PRO A 10 AA 4 VAL A 70 ? ILE A 72 ? VAL A 69 ILE A 71 AA 5 ARG A 182 ? VAL A 185 ? ARG A 181 VAL A 184 AA 6 TYR A 86 ? ASP A 90 ? TYR A 85 ASP A 89 AB 1 GLU A 135 ? LYS A 138 ? GLU A 134 LYS A 137 AB 2 ARG A 114 ? THR A 117 ? ARG A 113 THR A 116 AB 3 ARG A 154 ? VAL A 159 ? ARG A 153 VAL A 158 AB 4 HIS A 97 ? GLY A 102 ? HIS A 96 GLY A 101 AB 5 VAL A 171 ? ASP A 178 ? VAL A 170 ASP A 177 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N VAL A 44 ? N VAL A 43 O LEU A 49 ? O LEU A 48 AA 2 3 N ARG A 50 ? N ARG A 49 O LEU A 6 ? O LEU A 5 AA 3 4 N ALA A 9 ? N ALA A 8 O VAL A 70 ? O VAL A 69 AA 4 5 N GLY A 71 ? N GLY A 70 O ILE A 184 ? O ILE A 183 AA 5 6 N VAL A 185 ? N VAL A 184 O TYR A 86 ? O TYR A 85 AB 1 2 N ILE A 137 ? N ILE A 136 O ILE A 115 ? O ILE A 114 AB 2 3 N ALA A 116 ? N ALA A 115 O ARG A 154 ? O ARG A 153 AB 3 4 N VAL A 159 ? N VAL A 158 O HIS A 97 ? O HIS A 96 AB 4 5 N GLY A 102 ? N GLY A 101 O VAL A 171 ? O VAL A 170 # _database_PDB_matrix.entry_id 2VD2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2VD2 _atom_sites.fract_transf_matrix[1][1] 0.011636 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011636 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013167 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 0 0 ALA ALA A . n A 1 2 MET 2 1 1 MET MET A . n A 1 3 GLY 3 2 2 GLY GLY A . n A 1 4 LYS 4 3 3 LYS LYS A . n A 1 5 LEU 5 4 4 LEU LEU A . n A 1 6 LEU 6 5 5 LEU LEU A . n A 1 7 THR 7 6 6 THR THR A . n A 1 8 MET 8 7 7 MET MET A . n A 1 9 ALA 9 8 8 ALA ALA A . n A 1 10 MET 10 9 9 MET MET A . n A 1 11 PRO 11 10 10 PRO PRO A . n A 1 12 LYS 12 11 11 LYS LYS A . n A 1 13 GLY 13 12 12 GLY GLY A . n A 1 14 ARG 14 13 13 ARG ARG A . n A 1 15 ILE 15 14 14 ILE ILE A . n A 1 16 PHE 16 15 15 PHE PHE A . n A 1 17 GLU 17 16 16 GLU GLU A . n A 1 18 GLU 18 17 17 GLU GLU A . n A 1 19 ALA 19 18 18 ALA ALA A . n A 1 20 ALA 20 19 19 ALA ALA A . n A 1 21 GLY 21 20 20 GLY GLY A . n A 1 22 LEU 22 21 21 LEU LEU A . n A 1 23 LEU 23 22 22 LEU LEU A . n A 1 24 ARG 24 23 23 ARG ARG A . n A 1 25 GLN 25 24 24 GLN GLN A . n A 1 26 ALA 26 25 25 ALA ALA A . n A 1 27 GLY 27 26 26 GLY GLY A . n A 1 28 TYR 28 27 27 TYR TYR A . n A 1 29 ARG 29 28 28 ARG ARG A . n A 1 30 LEU 30 29 29 LEU LEU A . n A 1 31 PRO 31 30 30 PRO PRO A . n A 1 32 GLU 32 31 31 GLU GLU A . n A 1 33 GLU 33 32 32 GLU GLU A . n A 1 34 PHE 34 33 33 PHE PHE A . n A 1 35 GLU 35 34 34 GLU GLU A . n A 1 36 ASP 36 35 35 ASP ASP A . n A 1 37 SER 37 36 36 SER SER A . n A 1 38 ARG 38 37 37 ARG ARG A . n A 1 39 LYS 39 38 38 LYS LYS A . n A 1 40 LEU 40 39 39 LEU LEU A . n A 1 41 ILE 41 40 40 ILE ILE A . n A 1 42 ILE 42 41 41 ILE ILE A . n A 1 43 ASP 43 42 42 ASP ASP A . n A 1 44 VAL 44 43 43 VAL VAL A . n A 1 45 PRO 45 44 44 PRO PRO A . n A 1 46 GLU 46 45 45 GLU GLU A . n A 1 47 GLU 47 46 46 GLU GLU A . n A 1 48 ASN 48 47 47 ASN ASN A . n A 1 49 LEU 49 48 48 LEU LEU A . n A 1 50 ARG 50 49 49 ARG ARG A . n A 1 51 PHE 51 50 50 PHE PHE A . n A 1 52 ILE 52 51 51 ILE ILE A . n A 1 53 LEU 53 52 52 LEU LEU A . n A 1 54 ALA 54 53 53 ALA ALA A . n A 1 55 LYS 55 54 54 LYS LYS A . n A 1 56 PRO 56 55 55 PRO PRO A . n A 1 57 MET 57 56 56 MET MET A . n A 1 58 ASP 58 57 57 ASP ASP A . n A 1 59 VAL 59 58 58 VAL VAL A . n A 1 60 THR 60 59 59 THR THR A . n A 1 61 THR 61 60 60 THR THR A . n A 1 62 TYR 62 61 61 TYR TYR A . n A 1 63 VAL 63 62 62 VAL VAL A . n A 1 64 GLU 64 63 63 GLU GLU A . n A 1 65 HIS 65 64 64 HIS HIS A . n A 1 66 GLY 66 65 65 GLY GLY A . n A 1 67 VAL 67 66 66 VAL VAL A . n A 1 68 ALA 68 67 67 ALA ALA A . n A 1 69 ASP 69 68 68 ASP ASP A . n A 1 70 VAL 70 69 69 VAL VAL A . n A 1 71 GLY 71 70 70 GLY GLY A . n A 1 72 ILE 72 71 71 ILE ILE A . n A 1 73 ALA 73 72 72 ALA ALA A . n A 1 74 GLY 74 73 73 GLY GLY A . n A 1 75 LYS 75 74 74 LYS LYS A . n A 1 76 ASP 76 75 75 ASP ASP A . n A 1 77 VAL 77 76 76 VAL VAL A . n A 1 78 MET 78 77 77 MET MET A . n A 1 79 LEU 79 78 78 LEU LEU A . n A 1 80 GLU 80 79 79 GLU GLU A . n A 1 81 GLU 81 80 80 GLU GLU A . n A 1 82 GLU 82 81 81 GLU GLU A . n A 1 83 ARG 83 82 82 ARG ARG A . n A 1 84 ASP 84 83 83 ASP ASP A . n A 1 85 VAL 85 84 84 VAL VAL A . n A 1 86 TYR 86 85 85 TYR TYR A . n A 1 87 GLU 87 86 86 GLU GLU A . n A 1 88 VAL 88 87 87 VAL VAL A . n A 1 89 LEU 89 88 88 LEU LEU A . n A 1 90 ASP 90 89 89 ASP ASP A . n A 1 91 LEU 91 90 90 LEU LEU A . n A 1 92 ASN 92 91 91 ASN ASN A . n A 1 93 ILE 93 92 92 ILE ILE A . n A 1 94 SER 94 93 93 SER SER A . n A 1 95 LYS 95 94 94 LYS LYS A . n A 1 96 CYS 96 95 95 CYS CYS A . n A 1 97 HIS 97 96 96 HIS HIS A . n A 1 98 LEU 98 97 97 LEU LEU A . n A 1 99 ALA 99 98 98 ALA ALA A . n A 1 100 VAL 100 99 99 VAL VAL A . n A 1 101 ALA 101 100 100 ALA ALA A . n A 1 102 GLY 102 101 101 GLY GLY A . n A 1 103 LEU 103 102 102 LEU LEU A . n A 1 104 PRO 104 103 103 PRO PRO A . n A 1 105 ASN 105 104 104 ASN ASN A . n A 1 106 THR 106 105 105 THR THR A . n A 1 107 ASP 107 106 106 ASP ASP A . n A 1 108 TRP 108 107 107 TRP TRP A . n A 1 109 SER 109 108 108 SER SER A . n A 1 110 GLY 110 109 109 GLY GLY A . n A 1 111 VAL 111 110 110 VAL VAL A . n A 1 112 ALA 112 111 111 ALA ALA A . n A 1 113 PRO 113 112 112 PRO PRO A . n A 1 114 ARG 114 113 113 ARG ARG A . n A 1 115 ILE 115 114 114 ILE ILE A . n A 1 116 ALA 116 115 115 ALA ALA A . n A 1 117 THR 117 116 116 THR THR A . n A 1 118 LYS 118 117 117 LYS LYS A . n A 1 119 TYR 119 118 118 TYR TYR A . n A 1 120 PRO 120 119 119 PRO PRO A . n A 1 121 ASN 121 120 120 ASN ASN A . n A 1 122 VAL 122 121 121 VAL VAL A . n A 1 123 ALA 123 122 122 ALA ALA A . n A 1 124 SER 124 123 123 SER SER A . n A 1 125 SER 125 124 124 SER SER A . n A 1 126 TYR 126 125 125 TYR TYR A . n A 1 127 PHE 127 126 126 PHE PHE A . n A 1 128 ARG 128 127 127 ARG ARG A . n A 1 129 GLU 129 128 128 GLU GLU A . n A 1 130 GLN 130 129 129 GLN GLN A . n A 1 131 GLY 131 130 130 GLY GLY A . n A 1 132 GLU 132 131 131 GLU GLU A . n A 1 133 GLN 133 132 132 GLN GLN A . n A 1 134 VAL 134 133 133 VAL VAL A . n A 1 135 GLU 135 134 134 GLU GLU A . n A 1 136 ILE 136 135 135 ILE ILE A . n A 1 137 ILE 137 136 136 ILE ILE A . n A 1 138 LYS 138 137 137 LYS LYS A . n A 1 139 LEU 139 138 138 LEU LEU A . n A 1 140 ASN 140 139 139 ASN ASN A . n A 1 141 GLY 141 140 140 GLY GLY A . n A 1 142 SER 142 141 141 SER SER A . n A 1 143 ILE 143 142 142 ILE ILE A . n A 1 144 GLU 144 143 143 GLU GLU A . n A 1 145 LEU 145 144 144 LEU LEU A . n A 1 146 ALA 146 145 145 ALA ALA A . n A 1 147 PRO 147 146 146 PRO PRO A . n A 1 148 LEU 148 147 147 LEU LEU A . n A 1 149 ILE 149 148 148 ILE ILE A . n A 1 150 GLY 150 149 149 GLY GLY A . n A 1 151 LEU 151 150 150 LEU LEU A . n A 1 152 ALA 152 151 151 ALA ALA A . n A 1 153 ASP 153 152 152 ASP ASP A . n A 1 154 ARG 154 153 153 ARG ARG A . n A 1 155 ILE 155 154 154 ILE ILE A . n A 1 156 VAL 156 155 155 VAL VAL A . n A 1 157 ASP 157 156 156 ASP ASP A . n A 1 158 ILE 158 157 157 ILE ILE A . n A 1 159 VAL 159 158 158 VAL VAL A . n A 1 160 SER 160 159 159 SER SER A . n A 1 161 THR 161 160 160 THR THR A . n A 1 162 GLY 162 161 161 GLY GLY A . n A 1 163 GLN 163 162 162 GLN GLN A . n A 1 164 THR 164 163 163 THR THR A . n A 1 165 LEU 165 164 164 LEU LEU A . n A 1 166 LYS 166 165 165 LYS LYS A . n A 1 167 GLU 167 166 166 GLU GLU A . n A 1 168 ASN 168 167 167 ASN ASN A . n A 1 169 GLY 169 168 168 GLY GLY A . n A 1 170 LEU 170 169 169 LEU LEU A . n A 1 171 VAL 171 170 170 VAL VAL A . n A 1 172 GLU 172 171 171 GLU GLU A . n A 1 173 THR 173 172 172 THR THR A . n A 1 174 GLU 174 173 173 GLU GLU A . n A 1 175 HIS 175 174 174 HIS HIS A . n A 1 176 ILE 176 175 175 ILE ILE A . n A 1 177 CYS 177 176 176 CYS CYS A . n A 1 178 ASP 178 177 177 ASP ASP A . n A 1 179 ILE 179 178 178 ILE ILE A . n A 1 180 THR 180 179 179 THR THR A . n A 1 181 SER 181 180 180 SER SER A . n A 1 182 ARG 182 181 181 ARG ARG A . n A 1 183 PHE 183 182 182 PHE PHE A . n A 1 184 ILE 184 183 183 ILE ILE A . n A 1 185 VAL 185 184 184 VAL VAL A . n A 1 186 ASN 186 185 185 ASN ASN A . n A 1 187 PRO 187 186 186 PRO PRO A . n A 1 188 VAL 188 187 187 VAL VAL A . n A 1 189 SER 189 188 188 SER SER A . n A 1 190 TYR 190 189 189 TYR TYR A . n A 1 191 ARG 191 190 190 ARG ARG A . n A 1 192 MET 192 191 191 MET MET A . n A 1 193 LYS 193 192 192 LYS LYS A . n A 1 194 ASP 194 193 193 ASP ASP A . n A 1 195 ASP 195 194 194 ASP ASP A . n A 1 196 VAL 196 195 195 VAL VAL A . n A 1 197 ILE 197 196 196 ILE ILE A . n A 1 198 ASP 198 197 197 ASP ASP A . n A 1 199 GLU 199 198 198 GLU GLU A . n A 1 200 MET 200 199 199 MET MET A . n A 1 201 ALA 201 200 200 ALA ALA A . n A 1 202 SER 202 201 201 SER SER A . n A 1 203 ARG 203 202 202 ARG ARG A . n A 1 204 LEU 204 203 203 LEU LEU A . n A 1 205 SER 205 204 204 SER SER A . n A 1 206 LEU 206 205 205 LEU LEU A . n A 1 207 VAL 207 206 206 VAL VAL A . n A 1 208 VAL 208 207 207 VAL VAL A . n A 1 209 GLU 209 208 208 GLU GLU A . n A 1 210 GLY 210 209 209 GLY GLY A . n A 1 211 GLU 211 210 210 GLU GLU A . n A 1 212 THR 212 211 211 THR THR A . n A 1 213 ALA 213 212 ? ? ? A . n A 1 214 LYS 214 213 ? ? ? A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2710 ? 1 MORE -26.2 ? 1 'SSA (A^2)' 23960 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z+1/4 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 18.9870000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-11-04 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 16.7496 35.4609 -2.7328 0.3019 0.5147 0.4630 0.1313 0.0505 0.2298 6.7629 6.6026 14.1074 -0.1487 -0.0068 0.5764 0.2044 -0.0288 0.3909 -0.0662 0.0291 -0.3127 0.0274 0.9381 -0.2335 'X-RAY DIFFRACTION' 2 ? refined 28.7624 10.4123 -0.3880 0.4673 0.5985 0.4842 0.1801 -0.1533 -0.2215 11.0629 7.3466 13.3918 -4.7773 2.9516 -3.4673 0.2944 0.5460 -0.3399 -0.8105 -0.2753 -0.0904 0.3066 -0.8201 -0.0191 'X-RAY DIFFRACTION' 3 ? refined 10.5063 35.6686 -12.0867 0.5042 0.4421 0.4307 0.1554 0.0258 0.2561 10.4543 7.0211 15.9521 6.5377 2.4215 -3.5600 0.1277 0.6256 0.8548 -0.9312 0.0595 0.4552 -0.1722 0.1732 -0.1872 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 0 ? ? A 93 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 94 ? ? A 178 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 179 ? ? A 211 ? ? ? ? # _software.name REFMAC _software.classification refinement _software.version 5.2.0019 _software.citation_id ? _software.pdbx_ordinal 1 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 LEU _pdbx_validate_close_contact.auth_seq_id_1 90 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 N _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 ILE _pdbx_validate_close_contact.auth_seq_id_2 92 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.10 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CB A LYS 3 ? ? CG A LYS 3 ? ? 1.295 1.521 -0.226 0.027 N 2 1 CG A ARG 127 ? ? CD A ARG 127 ? ? 1.312 1.515 -0.203 0.025 N 3 1 CD A ARG 181 ? ? NE A ARG 181 ? ? 1.260 1.460 -0.200 0.017 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A LYS 3 ? ? CB A LYS 3 ? ? CG A LYS 3 ? ? 136.10 113.40 22.70 2.20 N 2 1 CG A LYS 38 ? ? CD A LYS 38 ? ? CE A LYS 38 ? ? 88.26 111.90 -23.64 3.00 N 3 1 C A LEU 102 ? ? N A PRO 103 ? ? CA A PRO 103 ? ? 129.97 119.30 10.67 1.50 Y 4 1 CB A ARG 127 ? ? CG A ARG 127 ? ? CD A ARG 127 ? ? 140.06 111.60 28.46 2.60 N 5 1 CG A ARG 181 ? ? CD A ARG 181 ? ? NE A ARG 181 ? ? 163.55 111.80 51.75 2.10 N 6 1 CD A ARG 181 ? ? NE A ARG 181 ? ? CZ A ARG 181 ? ? 158.55 123.60 34.95 1.40 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 1 ? ? -177.82 141.74 2 1 LYS A 3 ? ? -84.14 33.78 3 1 ARG A 28 ? ? -69.29 82.47 4 1 ASN A 47 ? ? 69.59 -1.73 5 1 THR A 60 ? ? -28.17 -68.22 6 1 LYS A 74 ? ? -47.03 -18.67 7 1 ASP A 75 ? ? -26.51 -49.90 8 1 GLU A 79 ? ? -33.52 -71.74 9 1 GLU A 80 ? ? -175.19 -155.05 10 1 VAL A 84 ? ? -172.18 142.93 11 1 LEU A 90 ? ? -119.58 53.38 12 1 ASN A 91 ? ? -62.17 38.48 13 1 SER A 93 ? ? -82.17 48.95 14 1 CYS A 95 ? ? 136.34 -177.56 15 1 PRO A 103 ? ? -20.57 -83.65 16 1 ASN A 104 ? ? -114.31 52.24 17 1 TYR A 118 ? ? -118.70 72.24 18 1 ASN A 120 ? ? -22.98 -74.36 19 1 SER A 159 ? ? -49.39 176.04 20 1 ASN A 167 ? ? -49.17 -19.05 21 1 ILE A 175 ? ? -136.10 -75.48 22 1 ASP A 193 ? ? -26.25 -45.09 23 1 ASP A 194 ? ? -46.70 -80.07 24 1 VAL A 207 ? ? -67.21 -72.08 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MET 1 ? CG ? A MET 2 CG 2 1 Y 1 A MET 1 ? SD ? A MET 2 SD 3 1 Y 1 A MET 1 ? CE ? A MET 2 CE 4 1 Y 0 A LYS 3 ? CG ? A LYS 4 CG 5 1 Y 0 A LYS 3 ? CD ? A LYS 4 CD 6 1 Y 0 A LYS 3 ? CE ? A LYS 4 CE 7 1 Y 0 A LYS 3 ? NZ ? A LYS 4 NZ 8 1 Y 0 A LYS 11 ? CD ? A LYS 12 CD 9 1 Y 0 A LYS 11 ? CE ? A LYS 12 CE 10 1 Y 0 A LYS 11 ? NZ ? A LYS 12 NZ 11 1 Y 0 A ARG 13 ? CD ? A ARG 14 CD 12 1 Y 0 A ARG 13 ? NE ? A ARG 14 NE 13 1 Y 0 A ARG 13 ? CZ ? A ARG 14 CZ 14 1 Y 0 A ARG 13 ? NH1 ? A ARG 14 NH1 15 1 Y 0 A ARG 13 ? NH2 ? A ARG 14 NH2 16 1 Y 1 A ARG 28 ? CG ? A ARG 29 CG 17 1 Y 1 A ARG 28 ? CD ? A ARG 29 CD 18 1 Y 1 A ARG 28 ? NE ? A ARG 29 NE 19 1 Y 1 A ARG 28 ? CZ ? A ARG 29 CZ 20 1 Y 1 A ARG 28 ? NH1 ? A ARG 29 NH1 21 1 Y 1 A ARG 28 ? NH2 ? A ARG 29 NH2 22 1 Y 1 A GLU 34 ? CG ? A GLU 35 CG 23 1 Y 1 A GLU 34 ? CD ? A GLU 35 CD 24 1 Y 1 A GLU 34 ? OE1 ? A GLU 35 OE1 25 1 Y 1 A GLU 34 ? OE2 ? A GLU 35 OE2 26 1 Y 0 A LYS 38 ? CD ? A LYS 39 CD 27 1 Y 0 A LYS 38 ? CE ? A LYS 39 CE 28 1 Y 0 A LYS 38 ? NZ ? A LYS 39 NZ 29 1 Y 1 A LYS 74 ? CG ? A LYS 75 CG 30 1 Y 1 A LYS 74 ? CD ? A LYS 75 CD 31 1 Y 1 A LYS 74 ? CE ? A LYS 75 CE 32 1 Y 1 A LYS 74 ? NZ ? A LYS 75 NZ 33 1 Y 1 A GLU 79 ? CG ? A GLU 80 CG 34 1 Y 1 A GLU 79 ? CD ? A GLU 80 CD 35 1 Y 1 A GLU 79 ? OE1 ? A GLU 80 OE1 36 1 Y 1 A GLU 79 ? OE2 ? A GLU 80 OE2 37 1 Y 0 A GLU 80 ? CD ? A GLU 81 CD 38 1 Y 0 A GLU 80 ? OE1 ? A GLU 81 OE1 39 1 Y 0 A GLU 80 ? OE2 ? A GLU 81 OE2 40 1 Y 1 A GLU 81 ? CG ? A GLU 82 CG 41 1 Y 1 A GLU 81 ? CD ? A GLU 82 CD 42 1 Y 1 A GLU 81 ? OE1 ? A GLU 82 OE1 43 1 Y 1 A GLU 81 ? OE2 ? A GLU 82 OE2 44 1 Y 1 A LYS 94 ? CG ? A LYS 95 CG 45 1 Y 1 A LYS 94 ? CD ? A LYS 95 CD 46 1 Y 1 A LYS 94 ? CE ? A LYS 95 CE 47 1 Y 1 A LYS 94 ? NZ ? A LYS 95 NZ 48 1 Y 0 A ARG 127 ? CD ? A ARG 128 CD 49 1 Y 0 A ARG 127 ? NE ? A ARG 128 NE 50 1 Y 0 A ARG 127 ? CZ ? A ARG 128 CZ 51 1 Y 0 A ARG 127 ? NH1 ? A ARG 128 NH1 52 1 Y 0 A ARG 127 ? NH2 ? A ARG 128 NH2 53 1 Y 0 A LYS 137 ? CD ? A LYS 138 CD 54 1 Y 0 A LYS 137 ? CE ? A LYS 138 CE 55 1 Y 0 A LYS 137 ? NZ ? A LYS 138 NZ 56 1 Y 0 A LYS 165 ? CG ? A LYS 166 CG 57 1 Y 0 A LYS 165 ? CD ? A LYS 166 CD 58 1 Y 0 A LYS 165 ? CE ? A LYS 166 CE 59 1 Y 0 A LYS 165 ? NZ ? A LYS 166 NZ 60 1 Y 0 A ARG 181 ? NE ? A ARG 182 NE 61 1 Y 0 A ARG 181 ? CZ ? A ARG 182 CZ 62 1 Y 0 A ARG 181 ? NH1 ? A ARG 182 NH1 63 1 Y 0 A ARG 181 ? NH2 ? A ARG 182 NH2 64 1 Y 1 A ARG 190 ? CG ? A ARG 191 CG 65 1 Y 1 A ARG 190 ? CD ? A ARG 191 CD 66 1 Y 1 A ARG 190 ? NE ? A ARG 191 NE 67 1 Y 1 A ARG 190 ? CZ ? A ARG 191 CZ 68 1 Y 1 A ARG 190 ? NH1 ? A ARG 191 NH1 69 1 Y 1 A ARG 190 ? NH2 ? A ARG 191 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 212 ? A ALA 213 2 1 Y 1 A LYS 213 ? A LYS 214 #