HEADER TRANSFERASE 28-SEP-07 2VD2 TITLE THE CRYSTAL STRUCTURE OF HISG FROM B. SUBTILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATP-PRTASE, ATP-PRT; COMPND 5 EC: 2.4.2.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 STRAIN: SUBTILIS 168; SOURCE 5 ATCC: 23857; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS HISG, TRANSFERASE, GLYCOSYLTRANSFERASE, HISTIDINE BIOSYNTHESIS, KEYWDS 2 AMINO-ACID BIOSYNTHESIS, ATP PHOSPHORIBOSYL TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.LOHKAMP,A.RIBOLDI-TUNNICLIFE,A.J.LAPTHORN REVDAT 3 13-JUL-11 2VD2 1 VERSN REVDAT 2 24-FEB-09 2VD2 1 VERSN REVDAT 1 04-NOV-08 2VD2 0 JRNL AUTH B.LOHKAMP,A.RIBOLDI-TUNNICLIFE,A.J.LAPTHORN JRNL TITL THE CRYSTAL STRUCTURE OF HISG FROM B. SUBTILIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 6285 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 306 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 315 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3580 REMARK 3 BIN FREE R VALUE SET COUNT : 9 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1611 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.18000 REMARK 3 B22 (A**2) : 0.18000 REMARK 3 B33 (A**2) : -0.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.386 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.434 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 54.556 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1601 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1033 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2183 ; 1.642 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2534 ; 0.943 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 211 ; 9.266 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 65 ;36.077 ;25.538 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 258 ;19.405 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;22.461 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 265 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1804 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 290 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 601 ; 0.271 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1256 ; 0.216 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 843 ; 0.203 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 918 ; 0.095 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 93 ; 0.183 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.256 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 24 ; 0.237 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.116 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1121 ; 0.354 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1696 ; 0.578 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 584 ; 0.867 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 487 ; 1.393 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 93 REMARK 3 ORIGIN FOR THE GROUP (A): 16.7496 35.4609 -2.7328 REMARK 3 T TENSOR REMARK 3 T11: 0.3019 T22: 0.5147 REMARK 3 T33: 0.4630 T12: 0.1313 REMARK 3 T13: 0.0505 T23: 0.2298 REMARK 3 L TENSOR REMARK 3 L11: 6.7629 L22: 6.6026 REMARK 3 L33: 14.1074 L12: -0.1487 REMARK 3 L13: -0.0068 L23: 0.5764 REMARK 3 S TENSOR REMARK 3 S11: 0.2044 S12: -0.0288 S13: 0.3909 REMARK 3 S21: -0.0662 S22: 0.0291 S23: -0.3127 REMARK 3 S31: 0.0274 S32: 0.9381 S33: -0.2335 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 178 REMARK 3 ORIGIN FOR THE GROUP (A): 28.7624 10.4123 -0.3880 REMARK 3 T TENSOR REMARK 3 T11: 0.4673 T22: 0.5985 REMARK 3 T33: 0.4842 T12: 0.1801 REMARK 3 T13: -0.1533 T23: -0.2215 REMARK 3 L TENSOR REMARK 3 L11: 11.0629 L22: 7.3466 REMARK 3 L33: 13.3918 L12: -4.7773 REMARK 3 L13: 2.9516 L23: -3.4673 REMARK 3 S TENSOR REMARK 3 S11: 0.2944 S12: 0.5460 S13: -0.3399 REMARK 3 S21: -0.8105 S22: -0.2753 S23: -0.0904 REMARK 3 S31: 0.3066 S32: -0.8201 S33: -0.0191 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 179 A 211 REMARK 3 ORIGIN FOR THE GROUP (A): 10.5063 35.6686 -12.0867 REMARK 3 T TENSOR REMARK 3 T11: 0.5042 T22: 0.4421 REMARK 3 T33: 0.4307 T12: 0.1554 REMARK 3 T13: 0.0258 T23: 0.2561 REMARK 3 L TENSOR REMARK 3 L11: 10.4543 L22: 7.0211 REMARK 3 L33: 15.9521 L12: 6.5377 REMARK 3 L13: 2.4215 L23: -3.5600 REMARK 3 S TENSOR REMARK 3 S11: 0.1277 S12: 0.6256 S13: 0.8548 REMARK 3 S21: -0.9312 S22: 0.0595 S23: 0.4552 REMARK 3 S31: -0.1722 S32: 0.1732 S33: -0.1872 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2VD2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-SEP-07. REMARK 100 THE PDBE ID CODE IS EBI-34002. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36000 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.80 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.0 REMARK 200 DATA REDUNDANCY : 6 REMARK 200 R MERGE (I) : 0.08 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.00 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA):3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.97400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.96100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 18.98700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.97400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 18.98700 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.96100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 18.98700 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 212 REMARK 465 LYS A 213 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 ARG A 28 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 34 CG CD OE1 OE2 REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 GLU A 79 CG CD OE1 OE2 REMARK 470 GLU A 81 CG CD OE1 OE2 REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 ARG A 190 CG CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; REMARK 480 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 480 I=INSERTION CODE): REMARK 480 M RES CSSEQI ATOMS REMARK 480 LYS A 3 CG CD CE NZ REMARK 480 LYS A 11 CD CE NZ REMARK 480 ARG A 13 CD NE CZ NH1 NH2 REMARK 480 LYS A 38 CD CE NZ REMARK 480 GLU A 80 CD OE1 OE2 REMARK 480 ARG A 127 CD NE CZ NH1 NH2 REMARK 480 LYS A 137 CD CE NZ REMARK 480 LYS A 165 CG CD CE NZ REMARK 480 ARG A 181 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 90 N ILE A 92 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 3 CB LYS A 3 CG -0.226 REMARK 500 ARG A 127 CG ARG A 127 CD -0.203 REMARK 500 ARG A 181 CD ARG A 181 NE -0.200 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 3 CA - CB - CG ANGL. DEV. = 22.7 DEGREES REMARK 500 LYS A 38 CG - CD - CE ANGL. DEV. = -23.6 DEGREES REMARK 500 PRO A 103 C - N - CA ANGL. DEV. = 10.7 DEGREES REMARK 500 ARG A 127 CB - CG - CD ANGL. DEV. = 28.5 DEGREES REMARK 500 ARG A 181 CD - NE - CZ ANGL. DEV. = 35.0 DEGREES REMARK 500 ARG A 181 CG - CD - NE ANGL. DEV. = 51.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 1 141.74 -177.82 REMARK 500 LYS A 3 33.78 -84.14 REMARK 500 ARG A 28 82.47 -69.29 REMARK 500 ASN A 47 -1.73 69.59 REMARK 500 THR A 60 -68.22 -28.17 REMARK 500 LYS A 74 -18.67 -47.03 REMARK 500 ASP A 75 -49.90 -26.51 REMARK 500 GLU A 79 -71.74 -33.52 REMARK 500 GLU A 80 -155.05 -175.19 REMARK 500 VAL A 84 142.93 -172.18 REMARK 500 LEU A 90 53.38 -119.58 REMARK 500 ASN A 91 38.48 -62.17 REMARK 500 SER A 93 48.95 -82.17 REMARK 500 CYS A 95 -177.56 136.34 REMARK 500 PRO A 103 -83.65 -20.57 REMARK 500 ASN A 104 52.24 -114.31 REMARK 500 TYR A 118 72.24 -118.70 REMARK 500 ASN A 120 -74.36 -22.98 REMARK 500 SER A 159 176.04 -49.39 REMARK 500 ASN A 167 -19.05 -49.17 REMARK 500 ILE A 175 -75.48 -136.10 REMARK 500 ASP A 193 -45.09 -26.25 REMARK 500 ASP A 194 -80.07 -46.70 REMARK 500 VAL A 207 -72.08 -67.21 REMARK 500 REMARK 500 REMARK: NULL DBREF 2VD2 A 0 0 PDB 2VD2 2VD2 0 0 DBREF 2VD2 A 1 213 UNP O34520 HIS1_BACSU 1 213 SEQRES 1 A 214 ALA MET GLY LYS LEU LEU THR MET ALA MET PRO LYS GLY SEQRES 2 A 214 ARG ILE PHE GLU GLU ALA ALA GLY LEU LEU ARG GLN ALA SEQRES 3 A 214 GLY TYR ARG LEU PRO GLU GLU PHE GLU ASP SER ARG LYS SEQRES 4 A 214 LEU ILE ILE ASP VAL PRO GLU GLU ASN LEU ARG PHE ILE SEQRES 5 A 214 LEU ALA LYS PRO MET ASP VAL THR THR TYR VAL GLU HIS SEQRES 6 A 214 GLY VAL ALA ASP VAL GLY ILE ALA GLY LYS ASP VAL MET SEQRES 7 A 214 LEU GLU GLU GLU ARG ASP VAL TYR GLU VAL LEU ASP LEU SEQRES 8 A 214 ASN ILE SER LYS CYS HIS LEU ALA VAL ALA GLY LEU PRO SEQRES 9 A 214 ASN THR ASP TRP SER GLY VAL ALA PRO ARG ILE ALA THR SEQRES 10 A 214 LYS TYR PRO ASN VAL ALA SER SER TYR PHE ARG GLU GLN SEQRES 11 A 214 GLY GLU GLN VAL GLU ILE ILE LYS LEU ASN GLY SER ILE SEQRES 12 A 214 GLU LEU ALA PRO LEU ILE GLY LEU ALA ASP ARG ILE VAL SEQRES 13 A 214 ASP ILE VAL SER THR GLY GLN THR LEU LYS GLU ASN GLY SEQRES 14 A 214 LEU VAL GLU THR GLU HIS ILE CYS ASP ILE THR SER ARG SEQRES 15 A 214 PHE ILE VAL ASN PRO VAL SER TYR ARG MET LYS ASP ASP SEQRES 16 A 214 VAL ILE ASP GLU MET ALA SER ARG LEU SER LEU VAL VAL SEQRES 17 A 214 GLU GLY GLU THR ALA LYS HELIX 1 1 ILE A 14 GLY A 26 1 13 HELIX 2 2 PRO A 30 GLU A 34 5 5 HELIX 3 3 PRO A 44 GLU A 46 5 3 HELIX 4 4 MET A 56 GLY A 65 1 10 HELIX 5 5 LYS A 74 GLU A 79 1 6 HELIX 6 6 TYR A 118 GLY A 130 1 13 HELIX 7 7 GLU A 143 ILE A 148 1 6 HELIX 8 8 ASN A 185 THR A 211 1 27 SHEET 1 AA 6 ILE A 40 VAL A 43 0 SHEET 2 AA 6 LEU A 48 ALA A 53 -1 O LEU A 48 N VAL A 43 SHEET 3 AA 6 LEU A 5 PRO A 10 1 O LEU A 5 N ARG A 49 SHEET 4 AA 6 VAL A 69 ILE A 71 1 O VAL A 69 N ALA A 8 SHEET 5 AA 6 ARG A 181 VAL A 184 -1 O ILE A 183 N GLY A 70 SHEET 6 AA 6 TYR A 85 ASP A 89 -1 O TYR A 85 N VAL A 184 SHEET 1 AB 5 GLU A 134 LYS A 137 0 SHEET 2 AB 5 ARG A 113 THR A 116 1 O ILE A 114 N ILE A 136 SHEET 3 AB 5 ARG A 153 VAL A 158 1 O ARG A 153 N ALA A 115 SHEET 4 AB 5 HIS A 96 GLY A 101 -1 O HIS A 96 N VAL A 158 SHEET 5 AB 5 VAL A 170 ASP A 177 -1 O VAL A 170 N GLY A 101 CRYST1 85.937 85.937 75.948 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011636 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011636 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013167 0.00000