HEADER MEMBRANE PROTEIN 05-OCT-07 2VDF TITLE STRUCTURE OF THE OPCA ADHESION FROM NEISSERIA MENINGITIDIS DETERMINED TITLE 2 BY CRYSTALLIZATION FROM THE CUBIC MESOPHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER MEMBRANE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: OPCA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; SOURCE 3 ORGANISM_TAXID: 487; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INVASIN, ADHESIN, BETA BARREL, OUTER MEMBRANE, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.CHEREZOV,W.LIU,J.P.DERRICK,B.LUAN,A.AKSIMENTIEV,V.KATRITCH, AUTHOR 2 M.CAFFREY REVDAT 5 13-DEC-23 2VDF 1 REMARK REVDAT 4 18-SEP-19 2VDF 1 JRNL REMARK REVDAT 3 24-FEB-09 2VDF 1 VERSN REVDAT 2 25-DEC-07 2VDF 1 JRNL ATOM ANISOU REVDAT 1 23-OCT-07 2VDF 0 JRNL AUTH V.CHEREZOV,W.LIU,J.P.DERRICK,B.LUAN,A.AKSIMENTIEV, JRNL AUTH 2 V.KATRITCH,M.CAFFREY JRNL TITL IN MESO CRYSTAL STRUCTURE AND DOCKING SIMULATIONS SUGGEST AN JRNL TITL 2 ALTERNATIVE PROTEOGLYCAN BINDING SITE IN THE OPCA OUTER JRNL TITL 3 MEMBRANE ADHESIN. JRNL REF PROTEINS V. 71 24 2008 JRNL REFN ESSN 1097-0134 JRNL PMID 18076035 JRNL DOI 10.1002/PROT.21841 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.M.PRINCE,M.ACHTMAN,J.P.DERRICK REMARK 1 TITL CRYSTAL STRUCTURE OF THE OPCA INTEGRAL MEMBRANE ADHESIN FROM REMARK 1 TITL 2 NEISSERIA MENINGITIDIS. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 99 3417 2002 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 11891340 REMARK 1 DOI 10.1073/PNAS.062630899 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 17043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 927 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1218 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1767 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11000 REMARK 3 B22 (A**2) : 0.71000 REMARK 3 B33 (A**2) : -0.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.201 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.181 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.135 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.889 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1811 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2432 ; 1.150 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 220 ; 9.423 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 82 ;34.545 ;23.902 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 318 ;13.391 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;13.721 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 262 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1346 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 690 ; 0.236 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1202 ; 0.314 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 226 ; 0.228 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 73 ; 0.300 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.440 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1131 ; 4.985 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1762 ; 6.208 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 769 ; 9.647 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 670 ;12.061 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VDF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1290033966. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9176 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18131 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1K24 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18%(V/V) PEG400, 0.1 M POTASSIUM REMARK 280 SULFATE, 0.05 M HEPES, PH 7.0, LIPIDIC CUBIC PHASE, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.93000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.15000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.25000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.15000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.93000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 21.25000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 GLN A 2 REMARK 465 GLU A 3 REMARK 465 LEU A 4 REMARK 465 GLN A 5 REMARK 465 THR A 6 REMARK 465 LYS A 124 REMARK 465 THR A 125 REMARK 465 THR A 126 REMARK 465 LYS A 127 REMARK 465 HIS A 128 REMARK 465 THR A 129 REMARK 465 GLY A 174 REMARK 465 VAL A 175 REMARK 465 THR A 176 REMARK 465 ASN A 177 REMARK 465 LEU A 178 REMARK 465 LYS A 179 REMARK 465 LYS A 180 REMARK 465 GLU A 203 REMARK 465 SER A 204 REMARK 465 VAL A 226 REMARK 465 THR A 227 REMARK 465 THR A 228 REMARK 465 LYS A 229 REMARK 465 SER A 230 REMARK 465 GLY A 231 REMARK 465 ASP A 232 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 80 CG CD CE NZ REMARK 470 THR A 173 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2107 O HOH A 2109 1.99 REMARK 500 O HOH A 2005 O HOH A 2006 2.11 REMARK 500 O HOH A 2065 O HOH A 2075 2.12 REMARK 500 O HOH A 2082 O HOH A 2114 2.18 REMARK 500 O HOH A 2105 O HOH A 2106 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 24 -121.20 58.02 REMARK 500 LEU A 201 75.99 -105.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 74 LYS A 75 -112.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 SULFATE ION (SO4): FROM CRYSTALLIZATION CONDITIONS REMARK 600 N-OCTANE (OCT): ORIGINATES FROM DETERGENT USED IN REMARK 600 CRYSTALLIZATION. DENSITY FOR HEADGROUP NOT OBSERVED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 10-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 11-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OCT A1254 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1255 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2J9S RELATED DB: PDB REMARK 900 STRUCTURE OF THE OPCA ADHESION FROM NEISSERIA MENINGITIDIS REMARK 900 DETERMINED BY CRYSTALLIZATION FROM THE CUBIC MESOPHASE REMARK 900 RELATED ID: 1K24 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE OPCA OUTER MEMBRANEADHESIN/INVASIN FROM REMARK 900 NEISSERIA MENINGITIDIS DBREF 2VDF A 1 252 UNP Q9AE79 Q9AE79_NEIME 1 252 DBREF 2VDF A 253 253 PDB 2VDF 2VDF 253 253 SEQADV 2VDF GLY A 37 UNP Q9AE79 SER 37 CONFLICT SEQRES 1 A 253 ALA GLN GLU LEU GLN THR ALA ASN GLU PHE THR VAL HIS SEQRES 2 A 253 THR ASP LEU SER SER ILE SER SER THR ARG ALA PHE LEU SEQRES 3 A 253 LYS GLU LYS HIS LYS ALA ALA LYS HIS ILE GLY VAL ARG SEQRES 4 A 253 ALA ASP ILE PRO PHE ASP ALA ASN GLN GLY ILE ARG LEU SEQRES 5 A 253 GLU ALA GLY PHE GLY ARG SER LYS LYS ASN ILE ILE ASN SEQRES 6 A 253 LEU GLU THR ASP GLU ASN LYS LEU GLY LYS THR LYS ASN SEQRES 7 A 253 VAL LYS LEU PRO THR GLY VAL PRO GLU ASN ARG ILE ASP SEQRES 8 A 253 LEU TYR THR GLY TYR THR TYR THR GLN THR LEU SER ASP SEQRES 9 A 253 SER LEU ASN PHE ARG VAL GLY ALA GLY LEU GLY PHE GLU SEQRES 10 A 253 SER SER LYS ASP SER ILE LYS THR THR LYS HIS THR LEU SEQRES 11 A 253 HIS SER SER ARG GLN SER TRP LEU ALA LYS VAL HIS ALA SEQRES 12 A 253 ASP LEU LEU SER GLN LEU GLY ASN GLY TRP TYR ILE ASN SEQRES 13 A 253 PRO TRP SER GLU VAL LYS PHE ASP LEU ASN SER ARG TYR SEQRES 14 A 253 LYS LEU ASN THR GLY VAL THR ASN LEU LYS LYS ASP ILE SEQRES 15 A 253 ASN GLN LYS THR ASN GLY TRP GLY PHE GLY LEU GLY ALA SEQRES 16 A 253 ASN ILE GLY LYS LYS LEU GLY GLU SER ALA SER ILE GLU SEQRES 17 A 253 ALA GLY PRO PHE TYR LYS GLN ARG THR TYR LYS GLU SER SEQRES 18 A 253 GLY GLU PHE SER VAL THR THR LYS SER GLY ASP VAL SER SEQRES 19 A 253 LEU THR ILE PRO LYS THR SER ILE ARG GLU TYR GLY LEU SEQRES 20 A 253 ARG VAL GLY ILE LYS PHE HET OCT A1254 8 HET SO4 A1255 5 HETNAM OCT N-OCTANE HETNAM SO4 SULFATE ION FORMUL 2 OCT C8 H18 FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *120(H2 O) HELIX 1 1 THR A 68 LEU A 73 1 6 SHEET 1 AA28 GLU A 9 ARG A 23 0 SHEET 2 AA28 LEU A 26 PRO A 43 -1 O LEU A 26 N ARG A 23 SHEET 3 AA28 GLN A 48 ASN A 65 -1 O ILE A 50 N ILE A 42 SHEET 4 AA28 VAL A 85 SER A 103 -1 O VAL A 85 N LYS A 61 SHEET 5 AA28 LEU A 106 SER A 122 -1 O LEU A 106 N LEU A 102 SHEET 6 AA28 HIS A 131 GLY A 150 -1 O SER A 132 N ASP A 121 SHEET 7 AA28 TRP A 153 LEU A 171 -1 O TRP A 153 N LEU A 149 SHEET 8 AA28 ILE A 182 LYS A 185 -1 O ILE A 182 N LEU A 171 SHEET 9 AA28 LEU A 26 PRO A 43 0 SHEET 10 AA28 GLU A 9 ARG A 23 -1 O GLU A 9 N ASP A 41 SHEET 11 AA28 GLN A 48 ASN A 65 0 SHEET 12 AA28 LEU A 26 PRO A 43 -1 O LYS A 27 N ILE A 64 SHEET 13 AA28 VAL A 85 SER A 103 0 SHEET 14 AA28 GLN A 48 ASN A 65 -1 O GLY A 49 N THR A 97 SHEET 15 AA28 LEU A 106 SER A 122 0 SHEET 16 AA28 VAL A 85 SER A 103 -1 O PRO A 86 N SER A 122 SHEET 17 AA28 HIS A 131 GLY A 150 0 SHEET 18 AA28 LEU A 106 SER A 122 -1 O ASN A 107 N LEU A 146 SHEET 19 AA28 TRP A 153 LEU A 171 0 SHEET 20 AA28 HIS A 131 GLY A 150 -1 O SER A 133 N LYS A 170 SHEET 21 AA28 ILE A 182 LYS A 185 0 SHEET 22 AA28 TRP A 153 LEU A 171 -1 O TYR A 169 N GLN A 184 SHEET 23 AA28 GLY A 188 LYS A 200 -1 O GLY A 188 N ASP A 164 SHEET 24 AA28 TRP A 153 LEU A 171 1 O TYR A 154 N GLY A 198 SHEET 25 AA28 SER A 206 TYR A 218 0 SHEET 26 AA28 GLY A 188 LYS A 200 -1 O TRP A 189 N THR A 217 SHEET 27 AA28 THR A 240 PHE A 253 0 SHEET 28 AA28 GLU A 9 ARG A 23 -1 O PHE A 10 N PHE A 253 SITE 1 AC1 2 ILE A 207 ILE A 251 SITE 1 AC2 5 ASN A 47 GLN A 100 THR A 101 LYS A 120 SITE 2 AC2 5 HOH A2120 CRYST1 37.860 42.500 150.300 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026413 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023529 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006653 0.00000