HEADER TRANSPORT PROTEIN 13-OCT-07 2VDY TITLE CRYSTAL STRUCTURE OF THE REACTIVE LOOP CLEAVED CORTICOSTEROID BINDING TITLE 2 GLOBULIN COMPLEXED WITH CORTISOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: CORTICOSTEROID-BINDING GLOBULIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 33-405; COMPND 5 SYNONYM: CBG, TRANSCORTIN, SERPIN A6, HUMAN CORTICOSTEROID-BINDING COMPND 6 GLOBULIN; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: COMPLEXED WITH CORTISOL SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3) COLI,; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PSUMO3; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PSUMO3-CBG KEYWDS GLYCOPROTEIN, LIPID-BINDING, STEROID-BINDING, DISEASE MUTATION, KEYWDS 2 CORTICOSTEROID BINDING GLOBULIN, TRANSPORT PROTEIN, CBG, SERPIN, KEYWDS 3 CLEAVED, SECRETED, CORTISOL, TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR A.ZHOU,Z.WEI,R.J.READ REVDAT 6 13-DEC-23 2VDY 1 REMARK REVDAT 5 08-NOV-17 2VDY 1 SOURCE REVDAT 4 13-JUL-11 2VDY 1 VERSN REVDAT 3 24-FEB-09 2VDY 1 VERSN REVDAT 2 01-JUL-08 2VDY 1 JRNL REMARK REVDAT 1 13-MAY-08 2VDY 0 JRNL AUTH A.ZHOU,Z.WEI,P.L.STANLEY,R.J.READ,P.E.STEIN,R.W.CARRELL JRNL TITL THE S-TO-R TRANSITION OF CORTICOSTEROID-BINDING GLOBULIN AND JRNL TITL 2 THE MECHANISM OF HORMONE RELEASE. JRNL REF J.MOL.BIOL. V. 380 244 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18513745 JRNL DOI 10.1016/J.JMB.2008.05.012 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0037 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 24274 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1295 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1639 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.3590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5670 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 165 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.04000 REMARK 3 B22 (A**2) : 1.36000 REMARK 3 B33 (A**2) : -2.99000 REMARK 3 B12 (A**2) : 0.29000 REMARK 3 B13 (A**2) : 1.45000 REMARK 3 B23 (A**2) : 0.74000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.431 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.320 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.237 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.362 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5846 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7937 ; 0.969 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 714 ; 5.063 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 251 ;34.446 ;24.821 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 996 ;14.435 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;12.732 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 924 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4306 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2451 ; 0.154 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3996 ; 0.294 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 222 ; 0.091 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 92 ; 0.121 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.104 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3719 ; 0.180 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5798 ; 0.308 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2425 ; 0.318 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2139 ; 0.498 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 383 REMARK 3 ORIGIN FOR THE GROUP (A): -18.3268 16.7645 -39.2394 REMARK 3 T TENSOR REMARK 3 T11: -0.1688 T22: -0.1366 REMARK 3 T33: -0.0692 T12: -0.0269 REMARK 3 T13: -0.0305 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 0.7028 L22: 1.0129 REMARK 3 L33: 2.3766 L12: -0.3032 REMARK 3 L13: -0.4986 L23: 0.7383 REMARK 3 S TENSOR REMARK 3 S11: -0.0001 S12: 0.0052 S13: 0.0069 REMARK 3 S21: -0.0198 S22: 0.0107 S23: -0.0687 REMARK 3 S31: 0.0347 S32: -0.0249 S33: -0.0105 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 20 B 383 REMARK 3 ORIGIN FOR THE GROUP (A): -8.6372 6.1827 16.6819 REMARK 3 T TENSOR REMARK 3 T11: -0.0627 T22: -0.0895 REMARK 3 T33: -0.0411 T12: 0.0028 REMARK 3 T13: 0.0000 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 0.8365 L22: 0.7021 REMARK 3 L33: 5.0348 L12: 0.0626 REMARK 3 L13: -1.1328 L23: -0.4969 REMARK 3 S TENSOR REMARK 3 S11: -0.0137 S12: 0.0544 S13: 0.0347 REMARK 3 S21: -0.0064 S22: -0.0415 S23: 0.0287 REMARK 3 S31: 0.2400 S32: -0.0069 S33: 0.0553 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2VDY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1290034138. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5419 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22575 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 19.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1QMN REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-20% PEG3350, 0.2M NACL, PH 7.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE REACTIVE LOOP OF THE PROTEIN FOR BOTH CHAINS A AND B REMARK 400 (CORRESPONDING TO UNIPROT RESIDUES 358-371) HAVE BEEN REMARK 400 MUTATED AND ARE NOW REPLACED BY PDB RESIDUES 336-349. REMARK 400 SEE ALSO REMARK 999. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 11 REMARK 465 ASN A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 ARG A 15 REMARK 465 THR A 76 REMARK 465 GLU A 77 REMARK 465 ARG A 78 REMARK 465 SER A 165 REMARK 465 GLY A 166 REMARK 465 LEU A 167 REMARK 465 SER A 350 REMARK 465 SER B 11 REMARK 465 ASN B 12 REMARK 465 HIS B 13 REMARK 465 HIS B 14 REMARK 465 ARG B 15 REMARK 465 THR B 76 REMARK 465 GLU B 77 REMARK 465 ARG B 78 REMARK 465 GLY B 166 REMARK 465 LEU B 167 REMARK 465 ASP B 168 REMARK 465 SER B 350 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 97 86.03 -150.62 REMARK 500 SER B 97 59.87 -147.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 (8S,9S,10R,11S,13S,14S,17R)-11, REMARK 600 17-DIHYDROXY-17-(2-HYDROXYACETYL)-10,13-DIMETHYL-2,6,7,8,9, REMARK 600 11,12,14,15,16-DECAHYDRO-1H-CYCLOPENTA[A]PHENANTHREN-3-ONE REMARK 600 (HCY): CORTISOL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HCY A1384 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HCY B1384 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VDX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE REACTIVE LOOP CLEAVED CORTICOSTEROID REMARK 900 BINDING GLOBULIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 336-349 OF HUMAN CBG MUTATED TO TEAAGAMFLEAIPR. REMARK 999 THIS PROTEIN WAS CLEAVED BY THROMBIN AT ARG349 BEFORE REMARK 999 CRYSTALLISATION. SEE ALSO REMARK 400. DBREF 2VDY A 11 335 UNP P08185 CBG_HUMAN 33 357 DBREF 2VDY A 336 349 PDB 2VDY 2VDY 336 349 DBREF 2VDY A 350 383 UNP P08185 CBG_HUMAN 372 405 DBREF 2VDY B 11 335 UNP P08185 CBG_HUMAN 33 357 DBREF 2VDY B 336 349 PDB 2VDY 2VDY 336 349 DBREF 2VDY B 350 383 UNP P08185 CBG_HUMAN 372 405 SEQADV 2VDY THR A 305 UNP P08185 ASN 327 CONFLICT SEQADV 2VDY THR B 305 UNP P08185 ASN 327 CONFLICT SEQRES 1 A 373 SER ASN HIS HIS ARG GLY LEU ALA SER ALA ASN VAL ASP SEQRES 2 A 373 PHE ALA PHE SER LEU TYR LYS HIS LEU VAL ALA LEU SER SEQRES 3 A 373 PRO LYS LYS ASN ILE PHE ILE SER PRO VAL SER ILE SER SEQRES 4 A 373 MET ALA LEU ALA MET LEU SER LEU GLY THR CYS GLY HIS SEQRES 5 A 373 THR ARG ALA GLN LEU LEU GLN GLY LEU GLY PHE ASN LEU SEQRES 6 A 373 THR GLU ARG SER GLU THR GLU ILE HIS GLN GLY PHE GLN SEQRES 7 A 373 HIS LEU HIS GLN LEU PHE ALA LYS SER ASP THR SER LEU SEQRES 8 A 373 GLU MET THR MET GLY ASN ALA LEU PHE LEU ASP GLY SER SEQRES 9 A 373 LEU GLU LEU LEU GLU SER PHE SER ALA ASP ILE LYS HIS SEQRES 10 A 373 TYR TYR GLU SER GLU VAL LEU ALA MET ASN PHE GLN ASP SEQRES 11 A 373 TRP ALA THR ALA SER ARG GLN ILE ASN SER TYR VAL LYS SEQRES 12 A 373 ASN LYS THR GLN GLY LYS ILE VAL ASP LEU PHE SER GLY SEQRES 13 A 373 LEU ASP SER PRO ALA ILE LEU VAL LEU VAL ASN TYR ILE SEQRES 14 A 373 PHE PHE LYS GLY THR TRP THR GLN PRO PHE ASP LEU ALA SEQRES 15 A 373 SER THR ARG GLU GLU ASN PHE TYR VAL ASP GLU THR THR SEQRES 16 A 373 VAL VAL LYS VAL PRO MET MET LEU GLN SER SER THR ILE SEQRES 17 A 373 SER TYR LEU HIS ASP SER GLU LEU PRO CYS GLN LEU VAL SEQRES 18 A 373 GLN MET ASN TYR VAL GLY ASN GLY THR VAL PHE PHE ILE SEQRES 19 A 373 LEU PRO ASP LYS GLY LYS MET ASN THR VAL ILE ALA ALA SEQRES 20 A 373 LEU SER ARG ASP THR ILE ASN ARG TRP SER ALA GLY LEU SEQRES 21 A 373 THR SER SER GLN VAL ASP LEU TYR ILE PRO LYS VAL THR SEQRES 22 A 373 ILE SER GLY VAL TYR ASP LEU GLY ASP VAL LEU GLU GLU SEQRES 23 A 373 MET GLY ILE ALA ASP LEU PHE THR THR GLN ALA ASN PHE SEQRES 24 A 373 SER ARG ILE THR GLN ASP ALA GLN LEU LYS SER SER LYS SEQRES 25 A 373 VAL VAL HIS LYS ALA VAL LEU GLN LEU ASN GLU GLU GLY SEQRES 26 A 373 THR GLU ALA ALA GLY ALA MET PHE LEU GLU ALA ILE PRO SEQRES 27 A 373 ARG SER LYS PRO ILE ILE LEU ARG PHE ASN GLN PRO PHE SEQRES 28 A 373 ILE ILE MET ILE PHE ASP HIS PHE THR TRP SER SER LEU SEQRES 29 A 373 PHE LEU ALA ARG VAL MET ASN PRO VAL SEQRES 1 B 373 SER ASN HIS HIS ARG GLY LEU ALA SER ALA ASN VAL ASP SEQRES 2 B 373 PHE ALA PHE SER LEU TYR LYS HIS LEU VAL ALA LEU SER SEQRES 3 B 373 PRO LYS LYS ASN ILE PHE ILE SER PRO VAL SER ILE SER SEQRES 4 B 373 MET ALA LEU ALA MET LEU SER LEU GLY THR CYS GLY HIS SEQRES 5 B 373 THR ARG ALA GLN LEU LEU GLN GLY LEU GLY PHE ASN LEU SEQRES 6 B 373 THR GLU ARG SER GLU THR GLU ILE HIS GLN GLY PHE GLN SEQRES 7 B 373 HIS LEU HIS GLN LEU PHE ALA LYS SER ASP THR SER LEU SEQRES 8 B 373 GLU MET THR MET GLY ASN ALA LEU PHE LEU ASP GLY SER SEQRES 9 B 373 LEU GLU LEU LEU GLU SER PHE SER ALA ASP ILE LYS HIS SEQRES 10 B 373 TYR TYR GLU SER GLU VAL LEU ALA MET ASN PHE GLN ASP SEQRES 11 B 373 TRP ALA THR ALA SER ARG GLN ILE ASN SER TYR VAL LYS SEQRES 12 B 373 ASN LYS THR GLN GLY LYS ILE VAL ASP LEU PHE SER GLY SEQRES 13 B 373 LEU ASP SER PRO ALA ILE LEU VAL LEU VAL ASN TYR ILE SEQRES 14 B 373 PHE PHE LYS GLY THR TRP THR GLN PRO PHE ASP LEU ALA SEQRES 15 B 373 SER THR ARG GLU GLU ASN PHE TYR VAL ASP GLU THR THR SEQRES 16 B 373 VAL VAL LYS VAL PRO MET MET LEU GLN SER SER THR ILE SEQRES 17 B 373 SER TYR LEU HIS ASP SER GLU LEU PRO CYS GLN LEU VAL SEQRES 18 B 373 GLN MET ASN TYR VAL GLY ASN GLY THR VAL PHE PHE ILE SEQRES 19 B 373 LEU PRO ASP LYS GLY LYS MET ASN THR VAL ILE ALA ALA SEQRES 20 B 373 LEU SER ARG ASP THR ILE ASN ARG TRP SER ALA GLY LEU SEQRES 21 B 373 THR SER SER GLN VAL ASP LEU TYR ILE PRO LYS VAL THR SEQRES 22 B 373 ILE SER GLY VAL TYR ASP LEU GLY ASP VAL LEU GLU GLU SEQRES 23 B 373 MET GLY ILE ALA ASP LEU PHE THR THR GLN ALA ASN PHE SEQRES 24 B 373 SER ARG ILE THR GLN ASP ALA GLN LEU LYS SER SER LYS SEQRES 25 B 373 VAL VAL HIS LYS ALA VAL LEU GLN LEU ASN GLU GLU GLY SEQRES 26 B 373 THR GLU ALA ALA GLY ALA MET PHE LEU GLU ALA ILE PRO SEQRES 27 B 373 ARG SER LYS PRO ILE ILE LEU ARG PHE ASN GLN PRO PHE SEQRES 28 B 373 ILE ILE MET ILE PHE ASP HIS PHE THR TRP SER SER LEU SEQRES 29 B 373 PHE LEU ALA ARG VAL MET ASN PRO VAL HET HCY A1384 26 HET HCY B1384 26 HETNAM HCY (11ALPHA,14BETA)-11,17,21-TRIHYDROXYPREGN-4-ENE-3,20- HETNAM 2 HCY DIONE HETSYN HCY CORTISOL FORMUL 3 HCY 2(C21 H30 O5) FORMUL 5 HOH *165(H2 O) HELIX 1 1 GLY A 16 SER A 36 1 21 HELIX 2 2 SER A 44 LEU A 57 1 14 HELIX 3 3 CYS A 60 LEU A 71 1 12 HELIX 4 4 GLU A 80 PHE A 94 1 15 HELIX 5 5 LEU A 118 TYR A 129 1 12 HELIX 6 6 ASP A 140 THR A 156 1 17 HELIX 7 7 ASP A 190 THR A 194 5 5 HELIX 8 8 LYS A 250 ALA A 256 1 7 HELIX 9 9 SER A 259 LEU A 270 1 12 HELIX 10 10 LEU A 290 MET A 297 1 8 HELIX 11 11 ALA A 300 THR A 304 5 5 HELIX 12 12 GLY B 16 SER B 36 1 21 HELIX 13 13 SER B 44 SER B 56 1 13 HELIX 14 14 LEU B 57 THR B 59 5 3 HELIX 15 15 CYS B 60 LEU B 71 1 12 HELIX 16 16 SER B 79 PHE B 94 1 16 HELIX 17 17 LEU B 118 TYR B 129 1 12 HELIX 18 18 ASP B 140 THR B 156 1 17 HELIX 19 19 ASP B 190 THR B 194 5 5 HELIX 20 20 LYS B 250 ALA B 256 1 7 HELIX 21 21 SER B 259 LEU B 270 1 12 HELIX 22 22 LEU B 290 MET B 297 1 8 HELIX 23 23 ALA B 300 THR B 304 5 5 SHEET 1 AA 7 ILE A 41 ILE A 43 0 SHEET 2 AA 7 SER A 373 VAL A 379 -1 O LEU A 376 N ILE A 43 SHEET 3 AA 7 PHE A 361 ASP A 367 -1 O PHE A 361 N VAL A 379 SHEET 4 AA 7 GLY A 239 PRO A 246 -1 O THR A 240 N PHE A 366 SHEET 5 AA 7 CYS A 228 ASN A 234 -1 O GLN A 229 N LEU A 245 SHEET 6 AA 7 VAL A 206 HIS A 222 -1 O SER A 219 N GLN A 232 SHEET 7 AA 7 ARG A 195 TYR A 200 -1 O ARG A 195 N MET A 211 SHEET 1 AB 8 ILE A 41 ILE A 43 0 SHEET 2 AB 8 SER A 373 VAL A 379 -1 O LEU A 376 N ILE A 43 SHEET 3 AB 8 PHE A 361 ASP A 367 -1 O PHE A 361 N VAL A 379 SHEET 4 AB 8 GLY A 239 PRO A 246 -1 O THR A 240 N PHE A 366 SHEET 5 AB 8 CYS A 228 ASN A 234 -1 O GLN A 229 N LEU A 245 SHEET 6 AB 8 VAL A 206 HIS A 222 -1 O SER A 219 N GLN A 232 SHEET 7 AB 8 THR A 271 PRO A 280 -1 O THR A 271 N TYR A 220 SHEET 8 AB 8 ILE A 353 ARG A 356 1 O ILE A 353 N ASP A 276 SHEET 1 AC 6 LYS A 96 SER A 97 0 SHEET 2 AC 6 GLU A 102 ASP A 112 -1 O MET A 103 N LYS A 96 SHEET 3 AC 6 LEU A 173 THR A 184 -1 O VAL A 174 N PHE A 110 SHEET 4 AC 6 GLY A 335 PRO A 348 -1 O THR A 336 N GLY A 183 SHEET 5 AC 6 LEU A 318 LEU A 331 -1 O LYS A 319 N ILE A 347 SHEET 6 AC 6 THR A 283 ASP A 289 -1 O ILE A 284 N LEU A 329 SHEET 1 AD 3 LYS A 96 SER A 97 0 SHEET 2 AD 3 GLU A 102 ASP A 112 -1 O MET A 103 N LYS A 96 SHEET 3 AD 3 GLU A 132 MET A 136 1 O GLU A 132 N LEU A 109 SHEET 1 BA 7 ILE B 41 ILE B 43 0 SHEET 2 BA 7 SER B 373 VAL B 379 -1 O LEU B 376 N ILE B 43 SHEET 3 BA 7 PHE B 361 ASP B 367 -1 O PHE B 361 N VAL B 379 SHEET 4 BA 7 GLY B 239 PRO B 246 -1 O THR B 240 N PHE B 366 SHEET 5 BA 7 CYS B 228 ASN B 234 -1 O GLN B 229 N LEU B 245 SHEET 6 BA 7 VAL B 206 HIS B 222 -1 O SER B 219 N GLN B 232 SHEET 7 BA 7 ARG B 195 TYR B 200 -1 O ARG B 195 N MET B 211 SHEET 1 BB 8 ILE B 41 ILE B 43 0 SHEET 2 BB 8 SER B 373 VAL B 379 -1 O LEU B 376 N ILE B 43 SHEET 3 BB 8 PHE B 361 ASP B 367 -1 O PHE B 361 N VAL B 379 SHEET 4 BB 8 GLY B 239 PRO B 246 -1 O THR B 240 N PHE B 366 SHEET 5 BB 8 CYS B 228 ASN B 234 -1 O GLN B 229 N LEU B 245 SHEET 6 BB 8 VAL B 206 HIS B 222 -1 O SER B 219 N GLN B 232 SHEET 7 BB 8 THR B 271 PRO B 280 -1 O THR B 271 N TYR B 220 SHEET 8 BB 8 ILE B 353 ARG B 356 1 O ILE B 353 N ASP B 276 SHEET 1 BC 9 LYS B 96 SER B 97 0 SHEET 2 BC 9 LEU B 101 ASP B 112 -1 O MET B 103 N LYS B 96 SHEET 3 BC 9 GLU B 132 MET B 136 1 O GLU B 132 N LEU B 109 SHEET 4 BC 9 LEU B 101 ASP B 112 1 O ASN B 107 N GLU B 132 SHEET 5 BC 9 THR B 283 ASP B 289 0 SHEET 6 BC 9 LEU B 318 LEU B 331 -1 O HIS B 325 N TYR B 288 SHEET 7 BC 9 GLY B 335 PRO B 348 -1 O GLU B 337 N GLN B 330 SHEET 8 BC 9 LEU B 173 THR B 184 -1 O LEU B 173 N ALA B 346 SHEET 9 BC 9 LEU B 101 ASP B 112 -1 O GLU B 102 N LYS B 182 SITE 1 AC1 8 SER A 19 GLN A 232 ILE A 263 ASN A 264 SITE 2 AC1 8 SER A 267 HIS A 368 TRP A 371 HOH A2109 SITE 1 AC2 7 SER B 19 GLN B 232 ARG B 260 ASN B 264 SITE 2 AC2 7 SER B 267 HIS B 368 TRP B 371 CRYST1 38.673 39.757 111.586 83.09 85.70 69.42 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025858 -0.009709 -0.000972 0.00000 SCALE2 0.000000 0.026867 -0.002718 0.00000 SCALE3 0.000000 0.000000 0.009033 0.00000