HEADER OXIDOREDUCTASE 15-OCT-07 2VE0 OBSLTE 12-OCT-11 2VE0 4A2D TITLE CORIOLOPSIS GALLICA LACCASE T2 COPPER DEPLETED COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACCASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.10.3.2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORIOLOPSIS GALLICA; SOURCE 3 ORGANISM_TAXID: 76126 KEYWDS COPPER, FLEXIBILITY, METAL-BINDING, OXIDOREDUCTASE, T1 KEYWDS 2 COPPER PARTIAL OCCUPANCY, T2 COPPER DEPLETED, BLUE KEYWDS 3 MULTICOPPER OXIDASE EXPDTA X-RAY DIFFRACTION AUTHOR E.DE LA MORA,B. VALDERRAMA,E.HORJALES,E.RUDINO-PINERA REVDAT 3 12-OCT-11 2VE0 1 OBSLTE REVDAT 2 24-FEB-09 2VE0 1 VERSN REVDAT 1 25-NOV-08 2VE0 0 JRNL AUTH E.DE LA MORA,B.VALDERRAMA,E.HORJALES, JRNL AUTH 2 E.RUDINO-PINERA JRNL TITL CRYSTAL STRUCTURE OF CORIOLOPSIS GALLICA LACCASE JRNL TITL 2 T2 COPPER DEPLETED JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.3 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 30399 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1604 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2255 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3310 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3737 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 95 REMARK 3 SOLVENT ATOMS : 126 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.19000 REMARK 3 B22 (A**2) : 0.12000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.285 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.228 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.186 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.862 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3946 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5416 ; 1.938 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 491 ; 8.893 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;37.790 ;24.353 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 520 ;18.857 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;21.998 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 631 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3042 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1728 ; 0.242 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2544 ; 0.315 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 181 ; 0.171 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 52 ; 0.284 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.103 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2510 ; 0.667 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4000 ; 1.165 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1600 ; 1.808 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1416 ; 2.613 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2VE0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-OCT-07. REMARK 100 THE PDBE ID CODE IS EBI-34152. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : YALE MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU-MSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30457 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.35 REMARK 200 RESOLUTION RANGE LOW (A) : 34.69 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.6 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 3.5 REMARK 200 R MERGE (I) : 0.11 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.50 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.5 REMARK 200 R MERGE FOR SHELL (I) : 0.47 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.60 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1V10 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.5 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 1000, PEG 8000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.14250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.87150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.91350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.87150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.14250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.91350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 54 - C1 NAG A 1497 1.94 REMARK 500 OD2 ASP A 150 - OH TYR A 152 2.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 160 CA ALA A 160 CB -0.207 REMARK 500 ARG A 242 N ARG A 242 CA -0.277 REMARK 500 PRO A 311 CB PRO A 311 CG -0.378 REMARK 500 PRO A 311 C PRO A 311 O -0.182 REMARK 500 VAL A 312 CA VAL A 312 CB -0.163 REMARK 500 VAL A 312 CB VAL A 312 CG1 -0.213 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 160 N - CA - C ANGL. DEV. = -16.9 DEGREES REMARK 500 ARG A 242 N - CA - CB ANGL. DEV. = 13.4 DEGREES REMARK 500 GLN A 241 O - C - N ANGL. DEV. = -10.8 DEGREES REMARK 500 VAL A 312 N - CA - C ANGL. DEV. = -22.0 DEGREES REMARK 500 VAL A 417 CB - CA - C ANGL. DEV. = -12.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 58 134.94 74.24 REMARK 500 SER A 113 -121.36 53.67 REMARK 500 ASP A 141 -159.72 -162.50 REMARK 500 ALA A 155 158.15 -47.44 REMARK 500 ALA A 160 -124.11 127.28 REMARK 500 ALA A 161 -80.91 62.22 REMARK 500 LEU A 180 7.02 -66.20 REMARK 500 ASP A 205 -74.74 -167.76 REMARK 500 ALA A 239 111.81 -34.08 REMARK 500 ALA A 240 -2.30 86.18 REMARK 500 ALA A 309 24.26 80.92 REMARK 500 PRO A 311 -150.53 -73.90 REMARK 500 VAL A 312 117.32 155.53 REMARK 500 ALA A 384 -125.60 59.07 REMARK 500 ALA A 385 -101.26 11.52 REMARK 500 ALA A 388 30.54 82.00 REMARK 500 ASN A 415 54.05 -159.93 REMARK 500 VAL A 431 107.69 -52.64 REMARK 500 ASP A 492 -25.01 120.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 158 GLY A 159 117.42 REMARK 500 GLY A 159 ALA A 160 -52.74 REMARK 500 ALA A 160 ALA A 161 -128.98 REMARK 500 PRO A 311 VAL A 312 -95.03 REMARK 500 PRO A 313 GLY A 314 -33.56 REMARK 500 PRO A 383 ALA A 384 129.10 REMARK 500 ALA A 385 SER A 386 -144.90 REMARK 500 SER A 386 ALA A 387 -144.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLN A 241 18.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 THR A 231 24.3 L L OUTSIDE RANGE REMARK 500 ARG A 242 14.9 L L OUTSIDE RANGE REMARK 500 VAL A 312 48.3 L L OUTSIDE RANGE REMARK 500 ALA A 385 23.2 L L OUTSIDE RANGE REMARK 500 SER A 386 22.1 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A1494 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 452 ND1 REMARK 620 2 HIS A 391 ND1 113.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A1495 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 446 NE2 REMARK 620 2 HIS A 111 NE2 124.3 REMARK 620 3 HIS A 396 NE2 100.1 104.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A1496 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 66 ND1 REMARK 620 2 HIS A 109 NE2 119.8 REMARK 620 3 HIS A 448 NE2 113.5 103.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU1 A1494 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU1 A1495 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU1 A1496 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A1497 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A1498 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A1499 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A1500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BMA A1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BMA A1502 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BMA A1503 REMARK 999 REMARK 999 SEQUENCE REMARK 999 OUR SEQUENCE HAS SOME MODIFICATIONS, BUT HAS AN IDENTITY REMARK 999 OF 96 PERCENT TO SEQUENCE ABD93941 (UNIPROT) DBREF 2VE0 A 1 493 PDB 2VE0 2VE0 1 493 SEQRES 1 A 493 ALA ILE GLY PRO VAL ALA ASP LEU THR ILE SER ASN GLY SEQRES 2 A 493 ALA VAL SER PRO ASP GLY PHE SER ARG GLN ALA ILE LEU SEQRES 3 A 493 VAL ASN ASP VAL PHE PRO SER PRO LEU ILE THR GLY ASN SEQRES 4 A 493 LYS GLY ASP ARG PHE GLN LEU ASN VAL ILE ASP ASN MET SEQRES 5 A 493 THR ASN HIS THR MET LEU LYS SER THR SER ILE HIS TRP SEQRES 6 A 493 HIS GLY PHE PHE GLN HIS GLY THR ASN TRP ALA ASP GLY SEQRES 7 A 493 PRO ALA PHE VAL ASN GLN CYS PRO ILE SER THR GLY HIS SEQRES 8 A 493 ALA PHE LEU TYR ASP PHE GLN VAL PRO ASP GLN ALA GLY SEQRES 9 A 493 THR PHE TRP TYR HIS SER HIS LEU SER THR GLN TYR CYS SEQRES 10 A 493 ASP GLY LEU ARG GLY PRO ILE VAL VAL TYR ASP PRO GLN SEQRES 11 A 493 ASP PRO HIS LYS SER LEU TYR ASP VAL ASP ASP ASP SER SEQRES 12 A 493 THR VAL ILE THR LEU ALA ASP TRP TYR HIS LEU ALA ALA SEQRES 13 A 493 LYS VAL GLY ALA ALA VAL PRO THR ALA ASP ALA THR LEU SEQRES 14 A 493 ILE ASN GLY LEU GLY ARG SER ILE SER THR LEU ASN ALA SEQRES 15 A 493 ASP LEU ALA VAL ILE THR VAL THR LYS GLY LYS ARG TYR SEQRES 16 A 493 ARG PHE ARG LEU VAL SER LEU SER CYS ASP PRO ASN HIS SEQRES 17 A 493 THR PHE SER ILE ASP GLY HIS SER LEU THR VAL ILE GLU SEQRES 18 A 493 ALA ASP SER VAL ASN LEU LYS PRO GLN THR VAL ASP SER SEQRES 19 A 493 ILE GLN ILE PHE ALA ALA GLN ARG TYR SER PHE VAL LEU SEQRES 20 A 493 ASN ALA ASP GLN ASP VAL ASP ASN TYR TRP ILE ARG ALA SEQRES 21 A 493 LEU PRO ASN SER GLY THR ARG ASN PHE ALA GLY GLY VAL SEQRES 22 A 493 ASN SER ALA ILE LEU ARG TYR ASP GLY ALA ALA PRO VAL SEQRES 23 A 493 GLU PRO THR THR THR GLN THR PRO SER THR ARG PRO LEU SEQRES 24 A 493 VAL GLU SER ALA LEU THR THR LEU THR ALA VAL PRO VAL SEQRES 25 A 493 PRO GLY LYS PRO THR PRO GLY GLY VAL ASP LEU ALA LEU SEQRES 26 A 493 ASN MET ALA PHE GLY ASN GLY GLY ASN PHE THR ILE ASN SEQRES 27 A 493 GLY ALA SER PHE THR PRO PRO THR VAL PRO VAL LEU LEU SEQRES 28 A 493 GLN ILE LEU SER GLY ALA GLN SER ALA GLN ASP LEU LEU SEQRES 29 A 493 PRO SER GLY SER VAL TYR SER LEU PRO ALA ASN ALA ASP SEQRES 30 A 493 ILE GLU ILE SER LEU PRO ALA ALA SER ALA ALA PHE PRO SEQRES 31 A 493 HIS PRO PHE HIS LEU HIS GLY HIS THR PHE ALA VAL VAL SEQRES 32 A 493 ARG SER ALA GLY SER SER THR TYR ASN TYR ALA ASN PRO SEQRES 33 A 493 VAL TYR ARG ASP VAL VAL SER THR GLY SER PRO GLY ASP SEQRES 34 A 493 ASN VAL THR ILE ARG PHE ARG THR ASP ASN PRO GLY PRO SEQRES 35 A 493 TRP PHE LEU HIS CYS HIS ILE ASP PHE HIS LEU GLU ALA SEQRES 36 A 493 GLY PHE ALA VAL VAL MET ALA GLU ASP ILE PRO ASP VAL SEQRES 37 A 493 ALA ALA THR ASN PRO VAL PRO GLN ALA TRP SER ASP LEU SEQRES 38 A 493 CYS PRO THR TYR ASP ALA LEU SER PRO ASP ASP GLN HET CU1 A1494 1 HET CU1 A1495 1 HET CU1 A1496 1 HET NAG A1497 14 HET NAG A1498 14 HET NAG A1499 14 HET NAG A1500 14 HET BMA A1501 12 HET BMA A1502 12 HET BMA A1503 12 HETNAM BMA BETA-D-MANNOSE HETNAM CU1 COPPER (I) ION HETNAM NAG N-ACETYL-D-GLUCOSAMINE FORMUL 2 BMA 3(C6 H12 O6) FORMUL 3 CU1 3(CU 1+) FORMUL 4 NAG 4(C8 H15 N O6) FORMUL 5 HOH *126(H2 O1) HELIX 1 1 ASN A 54 LEU A 58 5 5 HELIX 2 2 THR A 73 ASP A 77 5 5 HELIX 3 3 THR A 114 GLY A 119 5 6 HELIX 4 4 HIS A 133 TYR A 137 5 5 HELIX 5 5 ASP A 141 SER A 143 5 3 HELIX 6 6 PHE A 269 VAL A 273 5 5 HELIX 7 7 VAL A 300 LEU A 304 5 5 HELIX 8 8 PRO A 348 SER A 355 1 8 HELIX 9 9 ILE A 449 GLU A 454 1 6 HELIX 10 10 ASP A 467 ASN A 472 1 6 HELIX 11 11 PRO A 475 LEU A 488 1 14 SHEET 1 AA 4 ARG A 22 VAL A 27 0 SHEET 2 AA 4 VAL A 5 VAL A 15 -1 O SER A 11 N LEU A 26 SHEET 3 AA 4 ARG A 43 ASP A 50 1 O GLN A 45 N ALA A 6 SHEET 4 AA 4 ALA A 92 GLN A 98 -1 O PHE A 93 N VAL A 48 SHEET 1 AB 4 ILE A 36 ASN A 39 0 SHEET 2 AB 4 ARG A 121 TYR A 127 1 O PRO A 123 N ILE A 36 SHEET 3 AB 4 GLY A 104 SER A 110 -1 O GLY A 104 N VAL A 126 SHEET 4 AB 4 ILE A 63 HIS A 66 -1 O HIS A 64 N HIS A 109 SHEET 1 AC 6 ALA A 167 ILE A 170 0 SHEET 2 AC 6 VAL A 145 TRP A 151 -1 O ALA A 149 N LEU A 169 SHEET 3 AC 6 ARG A 194 SER A 201 1 O ARG A 198 N ILE A 146 SHEET 4 AC 6 ARG A 242 ASN A 248 -1 O TYR A 243 N LEU A 199 SHEET 5 AC 6 LEU A 217 ALA A 222 -1 O THR A 218 N VAL A 246 SHEET 6 AC 6 VAL A 225 VAL A 232 -1 O VAL A 225 N ALA A 222 SHEET 1 AD 5 VAL A 186 VAL A 189 0 SHEET 2 AD 5 SER A 275 TYR A 280 1 O ILE A 277 N ILE A 187 SHEET 3 AD 5 ASN A 255 PRO A 262 -1 O TYR A 256 N LEU A 278 SHEET 4 AD 5 HIS A 208 ILE A 212 -1 O THR A 209 N LEU A 261 SHEET 5 AD 5 ILE A 235 ILE A 237 -1 O ILE A 235 N PHE A 210 SHEET 1 AE 5 LEU A 323 ASN A 326 0 SHEET 2 AE 5 ASP A 377 PRO A 383 1 O ASP A 377 N LEU A 323 SHEET 3 AE 5 ASN A 430 ARG A 436 -1 O VAL A 431 N LEU A 382 SHEET 4 AE 5 PHE A 400 ARG A 404 -1 O ALA A 401 N ARG A 434 SHEET 5 AE 5 TYR A 418 ARG A 419 -1 O ARG A 419 N PHE A 400 SHEET 1 AF 2 PHE A 329 ASN A 331 0 SHEET 2 AF 2 PHE A 335 ILE A 337 -1 O THR A 336 N GLY A 330 SHEET 1 AG 5 VAL A 369 LEU A 372 0 SHEET 2 AG 5 ALA A 458 GLU A 463 1 O VAL A 460 N TYR A 370 SHEET 3 AG 5 GLY A 441 CYS A 447 -1 O GLY A 441 N GLU A 463 SHEET 4 AG 5 PRO A 392 LEU A 395 -1 O HIS A 394 N HIS A 446 SHEET 5 AG 5 VAL A 421 SER A 423 -1 O VAL A 422 N PHE A 393 SSBOND 1 CYS A 85 CYS A 482 1555 1555 2.05 SSBOND 2 CYS A 117 CYS A 204 1555 1555 2.01 LINK ND2 ASN A 430 C1 NAG A1498 1555 1555 1.44 LINK CU CU1 A1494 ND1 HIS A 452 1555 1555 2.51 LINK CU CU1 A1494 ND1 HIS A 391 1555 1555 1.92 LINK CU CU1 A1495 NE2 HIS A 446 1555 1555 2.06 LINK CU CU1 A1495 NE2 HIS A 111 1555 1555 2.16 LINK CU CU1 A1495 NE2 HIS A 396 1555 1555 2.35 LINK CU CU1 A1496 ND1 HIS A 66 1555 1555 2.21 LINK CU CU1 A1496 NE2 HIS A 109 1555 1555 2.42 LINK CU CU1 A1496 NE2 HIS A 448 1555 1555 2.37 LINK O4 NAG A1497 C1 NAG A1500 1555 1555 1.45 LINK O4 NAG A1499 C2 BMA A1503 1555 1555 1.34 LINK O4 NAG A1499 O2 BMA A1503 1555 1555 1.08 LINK C4 NAG A1499 O2 BMA A1503 1555 1555 1.34 LINK O4 NAG A1500 O5 BMA A1501 1555 1555 1.10 LINK O4 BMA A1501 O4 BMA A1502 1555 1555 1.09 LINK O4 BMA A1501 C4 BMA A1502 1555 1555 1.34 CISPEP 1 GLY A 3 PRO A 4 0 2.11 CISPEP 2 PHE A 31 PRO A 32 0 1.35 CISPEP 3 LEU A 364 PRO A 365 0 0.63 CISPEP 4 PHE A 389 PRO A 390 0 5.66 SITE 1 AC1 4 HIS A 391 CYS A 447 ILE A 449 HIS A 452 SITE 1 AC2 3 HIS A 111 HIS A 396 HIS A 446 SITE 1 AC3 4 HIS A 64 HIS A 66 HIS A 109 HIS A 448 SITE 1 AC4 5 GLN A 23 ASN A 54 MET A 57 ALA A 155 SITE 2 AC4 5 NAG A1500 SITE 1 AC5 5 THR A 289 SER A 381 ASN A 430 NAG A1499 SITE 2 AC5 5 HOH A2125 SITE 1 AC6 3 ASN A 326 NAG A1498 BMA A1503 SITE 1 AC7 7 ARG A 22 LEU A 154 ALA A 155 NAG A1497 SITE 2 AC7 7 BMA A1501 BMA A1502 HOH A2051 SITE 1 AC8 2 NAG A1500 BMA A1502 SITE 1 AC9 4 ASP A 250 GLN A 251 NAG A1500 BMA A1501 SITE 1 BC1 1 NAG A1499 CRYST1 56.285 85.827 151.743 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017767 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011651 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006590 0.00000 CONECT 498 3741 CONECT 649 3652 CONECT 849 3741 CONECT 865 3740 CONECT 913 1573 CONECT 1573 913 CONECT 2943 3739 CONECT 2992 3740 CONECT 3242 3756 CONECT 3381 3740 CONECT 3397 3741 CONECT 3431 3739 CONECT 3652 649 CONECT 3739 2943 3431 CONECT 3740 865 2992 3381 CONECT 3741 498 849 3397 CONECT 3742 3743 3753 CONECT 3743 3742 3744 3750 CONECT 3744 3743 3745 3751 CONECT 3745 3744 3746 3752 CONECT 3746 3745 3747 3753 CONECT 3747 3746 3754 CONECT 3748 3749 3750 3755 CONECT 3749 3748 CONECT 3750 3743 3748 CONECT 3751 3744 CONECT 3752 3745 3784 CONECT 3753 3742 3746 CONECT 3754 3747 CONECT 3755 3748 CONECT 3756 3242 3757 3767 CONECT 3757 3756 3758 3764 CONECT 3758 3757 3759 3765 CONECT 3759 3758 3760 3766 CONECT 3760 3759 3761 3767 CONECT 3761 3760 3768 CONECT 3762 3763 3764 3769 CONECT 3763 3762 CONECT 3764 3757 3762 CONECT 3765 3758 CONECT 3766 3759 CONECT 3767 3756 3760 CONECT 3768 3761 CONECT 3769 3762 CONECT 3770 3771 3781 CONECT 3771 3770 3772 3778 CONECT 3772 3771 3773 3779 CONECT 3773 3772 3774 3780 3829 CONECT 3774 3773 3775 3781 CONECT 3775 3774 3782 CONECT 3776 3777 3778 3783 CONECT 3777 3776 CONECT 3778 3771 3776 CONECT 3779 3772 CONECT 3780 3773 3823 3829 CONECT 3781 3770 3774 CONECT 3782 3775 CONECT 3783 3776 CONECT 3784 3752 3785 3795 CONECT 3785 3784 3786 3792 CONECT 3786 3785 3787 3793 CONECT 3787 3786 3788 3794 CONECT 3788 3787 3789 3795 CONECT 3789 3788 3796 CONECT 3790 3791 3792 3797 CONECT 3791 3790 CONECT 3792 3785 3790 CONECT 3793 3786 CONECT 3794 3787 3808 CONECT 3795 3784 3788 CONECT 3796 3789 CONECT 3797 3790 CONECT 3798 3799 3804 3808 CONECT 3799 3798 3800 3805 CONECT 3800 3799 3801 3806 CONECT 3801 3800 3802 3807 CONECT 3802 3801 3803 3808 CONECT 3803 3802 3809 CONECT 3804 3798 CONECT 3805 3799 CONECT 3806 3800 CONECT 3807 3801 3813 3819 CONECT 3808 3794 3798 3802 CONECT 3809 3803 CONECT 3810 3811 3816 3820 CONECT 3811 3810 3812 3817 CONECT 3812 3811 3813 3818 CONECT 3813 3807 3812 3814 3819 CONECT 3814 3813 3815 3820 CONECT 3815 3814 3821 CONECT 3816 3810 CONECT 3817 3811 CONECT 3818 3812 CONECT 3819 3807 3813 CONECT 3820 3810 3814 CONECT 3821 3815 CONECT 3822 3823 3828 3832 CONECT 3823 3780 3822 3824 3829 CONECT 3824 3823 3825 3830 CONECT 3825 3824 3826 3831 CONECT 3826 3825 3827 3832 CONECT 3827 3826 3833 CONECT 3828 3822 CONECT 3829 3773 3780 3823 CONECT 3830 3824 CONECT 3831 3825 CONECT 3832 3822 3826 CONECT 3833 3827 MASTER 458 0 10 11 31 0 13 6 3958 1 108 38 END