data_2VEB # _entry.id 2VEB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2VEB PDBE EBI-34179 WWPDB D_1290034179 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2VEE _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'STRUCTURE OF PROTOGLOBIN FROM METHANOSARCINA ACETIVORANS C2A' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2VEB _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2007-10-18 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nardini, M.' 1 'Pesce, A.' 2 'Thijs, L.' 3 'Saito, J.A.' 4 'Dewilde, S.' 5 'Alam, M.' 6 'Ascenzi, P.' 7 'Coletta, M.' 8 'Ciaccio, C.' 9 'Moens, L.' 10 'Bolognesi, M.' 11 # _citation.id primary _citation.title 'Archaeal Protoglobin Structure Indicates New Ligand Diffusion Paths and Modulation of Haem-Reactivity.' _citation.journal_abbrev 'Embo Rep.' _citation.journal_volume 9 _citation.page_first 157 _citation.page_last ? _citation.year 2008 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1469-221X _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18188182 _citation.pdbx_database_id_DOI 10.1038/SJ.EMBOR.7401153 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Nardini, M.' 1 primary 'Pesce, A.' 2 primary 'Thijs, L.' 3 primary 'Saito, J.A.' 4 primary 'Dewilde, S.' 5 primary 'Alam, M.' 6 primary 'Ascenzi, P.' 7 primary 'Coletta, M.' 8 primary 'Ciaccio, C.' 9 primary 'Moens, L.' 10 primary 'Bolognesi, M.' 11 # _cell.entry_id 2VEB _cell.length_a 80.059 _cell.length_b 49.271 _cell.length_c 51.513 _cell.angle_alpha 90.00 _cell.angle_beta 92.88 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VEB _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man PROTOGLOBIN 23010.863 1 ? YES ? ? 2 non-polymer syn 'PROTOPORPHYRIN IX CONTAINING FE' 616.487 1 ? ? ? ? 3 non-polymer syn 'PHOSPHATE ION' 94.971 2 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 5 non-polymer syn 'OXYGEN MOLECULE' 31.999 1 ? ? ? ? 6 water nat water 18.015 265 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MSVEKIPGYTYGETENRAPFNLEDLKLLKEAVMFTAEDEEYIQKAGEVLEDQVEEILDTWYGFVGSHPHLLYYFTSPDGT PNEKYLAAVRKRFSRWILDTSNRSYDQAWLDYQYEIGLRHHRTKKNQTDNVESVPNIGYRYLVAFIYPITATMKPFLARK GHTPEEVEKMYQAWFKATTLQVALWSYPYVKYGDF ; _entity_poly.pdbx_seq_one_letter_code_can ;MSVEKIPGYTYGETENRAPFNLEDLKLLKEAVMFTAEDEEYIQKAGEVLEDQVEEILDTWYGFVGSHPHLLYYFTSPDGT PNEKYLAAVRKRFSRWILDTSNRSYDQAWLDYQYEIGLRHHRTKKNQTDNVESVPNIGYRYLVAFIYPITATMKPFLARK GHTPEEVEKMYQAWFKATTLQVALWSYPYVKYGDF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 VAL n 1 4 GLU n 1 5 LYS n 1 6 ILE n 1 7 PRO n 1 8 GLY n 1 9 TYR n 1 10 THR n 1 11 TYR n 1 12 GLY n 1 13 GLU n 1 14 THR n 1 15 GLU n 1 16 ASN n 1 17 ARG n 1 18 ALA n 1 19 PRO n 1 20 PHE n 1 21 ASN n 1 22 LEU n 1 23 GLU n 1 24 ASP n 1 25 LEU n 1 26 LYS n 1 27 LEU n 1 28 LEU n 1 29 LYS n 1 30 GLU n 1 31 ALA n 1 32 VAL n 1 33 MET n 1 34 PHE n 1 35 THR n 1 36 ALA n 1 37 GLU n 1 38 ASP n 1 39 GLU n 1 40 GLU n 1 41 TYR n 1 42 ILE n 1 43 GLN n 1 44 LYS n 1 45 ALA n 1 46 GLY n 1 47 GLU n 1 48 VAL n 1 49 LEU n 1 50 GLU n 1 51 ASP n 1 52 GLN n 1 53 VAL n 1 54 GLU n 1 55 GLU n 1 56 ILE n 1 57 LEU n 1 58 ASP n 1 59 THR n 1 60 TRP n 1 61 TYR n 1 62 GLY n 1 63 PHE n 1 64 VAL n 1 65 GLY n 1 66 SER n 1 67 HIS n 1 68 PRO n 1 69 HIS n 1 70 LEU n 1 71 LEU n 1 72 TYR n 1 73 TYR n 1 74 PHE n 1 75 THR n 1 76 SER n 1 77 PRO n 1 78 ASP n 1 79 GLY n 1 80 THR n 1 81 PRO n 1 82 ASN n 1 83 GLU n 1 84 LYS n 1 85 TYR n 1 86 LEU n 1 87 ALA n 1 88 ALA n 1 89 VAL n 1 90 ARG n 1 91 LYS n 1 92 ARG n 1 93 PHE n 1 94 SER n 1 95 ARG n 1 96 TRP n 1 97 ILE n 1 98 LEU n 1 99 ASP n 1 100 THR n 1 101 SER n 1 102 ASN n 1 103 ARG n 1 104 SER n 1 105 TYR n 1 106 ASP n 1 107 GLN n 1 108 ALA n 1 109 TRP n 1 110 LEU n 1 111 ASP n 1 112 TYR n 1 113 GLN n 1 114 TYR n 1 115 GLU n 1 116 ILE n 1 117 GLY n 1 118 LEU n 1 119 ARG n 1 120 HIS n 1 121 HIS n 1 122 ARG n 1 123 THR n 1 124 LYS n 1 125 LYS n 1 126 ASN n 1 127 GLN n 1 128 THR n 1 129 ASP n 1 130 ASN n 1 131 VAL n 1 132 GLU n 1 133 SER n 1 134 VAL n 1 135 PRO n 1 136 ASN n 1 137 ILE n 1 138 GLY n 1 139 TYR n 1 140 ARG n 1 141 TYR n 1 142 LEU n 1 143 VAL n 1 144 ALA n 1 145 PHE n 1 146 ILE n 1 147 TYR n 1 148 PRO n 1 149 ILE n 1 150 THR n 1 151 ALA n 1 152 THR n 1 153 MET n 1 154 LYS n 1 155 PRO n 1 156 PHE n 1 157 LEU n 1 158 ALA n 1 159 ARG n 1 160 LYS n 1 161 GLY n 1 162 HIS n 1 163 THR n 1 164 PRO n 1 165 GLU n 1 166 GLU n 1 167 VAL n 1 168 GLU n 1 169 LYS n 1 170 MET n 1 171 TYR n 1 172 GLN n 1 173 ALA n 1 174 TRP n 1 175 PHE n 1 176 LYS n 1 177 ALA n 1 178 THR n 1 179 THR n 1 180 LEU n 1 181 GLN n 1 182 VAL n 1 183 ALA n 1 184 LEU n 1 185 TRP n 1 186 SER n 1 187 TYR n 1 188 PRO n 1 189 TYR n 1 190 VAL n 1 191 LYS n 1 192 TYR n 1 193 GLY n 1 194 ASP n 1 195 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'METHANOSARCINA ACETIVORANS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2214 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8TLY9_METAC _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q8TLY9 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2VEB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 195 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8TLY9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 195 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 195 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2VEB _struct_ref_seq_dif.mon_id SER _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 101 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q8TLY9 _struct_ref_seq_dif.db_mon_id CYS _struct_ref_seq_dif.pdbx_seq_db_seq_num 101 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 101 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HEM non-polymer . 'PROTOPORPHYRIN IX CONTAINING FE' HEME 'C34 H32 Fe N4 O4' 616.487 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 OXY non-polymer . 'OXYGEN MOLECULE' ? O2 31.999 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2VEB _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.31 _exptl_crystal.density_percent_sol 46.9 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.2 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.4 M MONOBASIC AMMONIUM PHOSPHATE, pH 4.2' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2007-03-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.954 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID23-1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID23-1 _diffrn_source.pdbx_wavelength 0.954 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2VEB _reflns.observed_criterion_sigma_I 3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 51.40 _reflns.d_resolution_high 1.30 _reflns.number_obs 48188 _reflns.number_all ? _reflns.percent_possible_obs 97.8 _reflns.pdbx_Rmerge_I_obs 0.05 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 24.70 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.0 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.30 _reflns_shell.d_res_low 1.37 _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs 0.22 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 7.50 _reflns_shell.pdbx_redundancy 7.1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2VEB _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 45754 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 51.43 _refine.ls_d_res_high 1.30 _refine.ls_percent_reflns_obs 97.7 _refine.ls_R_factor_obs 0.161 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.160 _refine.ls_R_factor_R_free 0.190 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 2432 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.943 _refine.B_iso_mean 17.62 _refine.aniso_B[1][1] -0.04000 _refine.aniso_B[2][2] -0.12000 _refine.aniso_B[3][3] 0.18000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.11000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.056 _refine.pdbx_overall_ESU_R_Free 0.052 _refine.overall_SU_ML 0.025 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.246 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1591 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 61 _refine_hist.number_atoms_solvent 265 _refine_hist.number_atoms_total 1917 _refine_hist.d_res_high 1.30 _refine_hist.d_res_low 51.43 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.022 ? 1725 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.330 2.031 ? 2364 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.925 5.000 ? 195 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 40.970 23.793 ? 87 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 11.647 15.000 ? 271 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.232 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.091 0.200 ? 234 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.020 ? 1348 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.231 0.200 ? 845 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.317 0.200 ? 1168 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.237 0.200 ? 180 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.209 0.200 ? 72 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.214 0.200 ? 36 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.270 1.500 ? 982 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.801 2.000 ? 1560 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.563 3.000 ? 875 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.308 4.500 ? 799 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.30 _refine_ls_shell.d_res_low 1.33 _refine_ls_shell.number_reflns_R_work 3443 _refine_ls_shell.R_factor_R_work 0.1540 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.1720 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 187 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2VEB _struct.title 'High resolution structure of protoglobin from Methanosarcina acetivorans C2A' _struct.pdbx_descriptor PROTOGLOBIN _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2VEB _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' _struct_keywords.text 'HEMOPROTEIN STRUCTURE, PROTEIN MATRIX TUNNELS, PROTOGLOBIN, METHANOGENESIS, ARCHAEA PROTEIN, TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 6 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 21 ? MET A 33 ? ASN A 21 MET A 33 1 ? 13 HELX_P HELX_P2 2 THR A 35 ? GLU A 50 ? THR A 35 GLU A 50 1 ? 16 HELX_P HELX_P3 3 GLN A 52 ? SER A 66 ? GLN A 52 SER A 66 1 ? 15 HELX_P HELX_P4 4 HIS A 67 ? TYR A 72 ? HIS A 67 TYR A 72 1 ? 6 HELX_P HELX_P5 5 ASN A 82 ? ARG A 103 ? ASN A 82 ARG A 103 1 ? 22 HELX_P HELX_P6 6 ASP A 106 ? HIS A 121 ? ASP A 106 HIS A 121 1 ? 16 HELX_P HELX_P7 7 GLY A 138 ? ALA A 158 ? GLY A 138 ALA A 158 1 ? 21 HELX_P HELX_P8 10 THR A 163 ? SER A 186 ? THR A 163 SER A 186 1 ? 24 HELX_P HELX_P9 11 TYR A 187 ? VAL A 190 ? TYR A 187 VAL A 190 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? B HEM . FE ? ? ? 1_555 F OXY . O1 ? ? A HEM 200 A OXY 350 1_555 ? ? ? ? ? ? ? 2.231 ? metalc2 metalc ? ? B HEM . FE ? ? ? 1_555 A HIS 120 NE2 ? ? A HEM 200 A HIS 120 1_555 ? ? ? ? ? ? ? 2.128 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 23 'BINDING SITE FOR RESIDUE HEM A 200' AC2 Software ? ? ? ? 10 'BINDING SITE FOR RESIDUE PO4 A 202' AC3 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE PO4 A 203' AC4 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE GOL A 204' AC5 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE OXY A 350' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 23 LEU A 70 ? LEU A 70 . ? 1_555 ? 2 AC1 23 TYR A 73 ? TYR A 73 . ? 1_555 ? 3 AC1 23 PHE A 74 ? PHE A 74 . ? 1_555 ? 4 AC1 23 TYR A 85 ? TYR A 85 . ? 1_555 ? 5 AC1 23 VAL A 89 ? VAL A 89 . ? 1_555 ? 6 AC1 23 ARG A 92 ? ARG A 92 . ? 1_555 ? 7 AC1 23 PHE A 93 ? PHE A 93 . ? 1_555 ? 8 AC1 23 TRP A 96 ? TRP A 96 . ? 1_555 ? 9 AC1 23 TYR A 112 ? TYR A 112 . ? 1_555 ? 10 AC1 23 ARG A 119 ? ARG A 119 . ? 1_555 ? 11 AC1 23 HIS A 120 ? HIS A 120 . ? 1_555 ? 12 AC1 23 LYS A 125 ? LYS A 125 . ? 1_555 ? 13 AC1 23 ASN A 126 ? ASN A 126 . ? 1_555 ? 14 AC1 23 ILE A 137 ? ILE A 137 . ? 1_555 ? 15 AC1 23 TYR A 141 ? TYR A 141 . ? 1_555 ? 16 AC1 23 PHE A 145 ? PHE A 145 . ? 1_555 ? 17 AC1 23 VAL A 182 ? VAL A 182 . ? 1_555 ? 18 AC1 23 TRP A 185 ? TRP A 185 . ? 1_555 ? 19 AC1 23 OXY F . ? OXY A 350 . ? 1_555 ? 20 AC1 23 HOH G . ? HOH A 2205 . ? 1_555 ? 21 AC1 23 HOH G . ? HOH A 2262 . ? 1_555 ? 22 AC1 23 HOH G . ? HOH A 2263 . ? 1_555 ? 23 AC1 23 HOH G . ? HOH A 2264 . ? 1_555 ? 24 AC2 10 GLY A 12 ? GLY A 12 . ? 2_556 ? 25 AC2 10 GLY A 12 ? GLY A 12 . ? 1_555 ? 26 AC2 10 GLU A 13 ? GLU A 13 . ? 1_555 ? 27 AC2 10 THR A 14 ? THR A 14 . ? 1_555 ? 28 AC2 10 GLU A 15 ? GLU A 15 . ? 2_556 ? 29 AC2 10 GLU A 15 ? GLU A 15 . ? 1_555 ? 30 AC2 10 ASN A 16 ? ASN A 16 . ? 1_555 ? 31 AC2 10 ALA A 108 ? ALA A 108 . ? 1_555 ? 32 AC2 10 ASP A 111 ? ASP A 111 . ? 1_555 ? 33 AC2 10 HOH G . ? HOH A 2265 . ? 1_555 ? 34 AC3 8 TYR A 72 ? TYR A 72 . ? 1_555 ? 35 AC3 8 VAL A 134 ? VAL A 134 . ? 1_555 ? 36 AC3 8 PRO A 135 ? PRO A 135 . ? 1_555 ? 37 AC3 8 ASN A 136 ? ASN A 136 . ? 1_555 ? 38 AC3 8 HOH G . ? HOH A 2136 . ? 1_555 ? 39 AC3 8 HOH G . ? HOH A 2226 . ? 1_555 ? 40 AC3 8 HOH G . ? HOH A 2266 . ? 1_555 ? 41 AC3 8 HOH G . ? HOH A 2267 . ? 1_555 ? 42 AC4 9 PRO A 164 ? PRO A 164 . ? 1_565 ? 43 AC4 9 GLU A 165 ? GLU A 165 . ? 1_565 ? 44 AC4 9 TYR A 187 ? TYR A 187 . ? 1_555 ? 45 AC4 9 PRO A 188 ? PRO A 188 . ? 1_555 ? 46 AC4 9 VAL A 190 ? VAL A 190 . ? 1_555 ? 47 AC4 9 LYS A 191 ? LYS A 191 . ? 2_555 ? 48 AC4 9 TYR A 192 ? TYR A 192 . ? 1_555 ? 49 AC4 9 HOH G . ? HOH A 2268 . ? 1_555 ? 50 AC4 9 HOH G . ? HOH A 2269 . ? 1_555 ? 51 AC5 2 PHE A 93 ? PHE A 93 . ? 1_555 ? 52 AC5 2 HEM B . ? HEM A 200 . ? 1_555 ? # _database_PDB_matrix.entry_id 2VEB _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2VEB _atom_sites.fract_transf_matrix[1][1] 0.012491 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000628 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020296 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019437 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C FE N O P S # loop_ _database_PDB_caveat.text 'THE DATA IS MUCH LESS COMPLETE THAN REPORTED IN THE HEADER.' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 SER 2 2 ? ? ? A . n A 1 3 VAL 3 3 ? ? ? A . n A 1 4 GLU 4 4 ? ? ? A . n A 1 5 LYS 5 5 ? ? ? A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 TYR 9 9 9 TYR TYR A . n A 1 10 THR 10 10 10 THR THR A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 ASN 16 16 16 ASN ASN A . n A 1 17 ARG 17 17 17 ARG ARG A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 PHE 20 20 20 PHE PHE A . n A 1 21 ASN 21 21 21 ASN ASN A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 MET 33 33 33 MET MET A . n A 1 34 PHE 34 34 34 PHE PHE A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 ASP 38 38 38 ASP ASP A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 TYR 41 41 41 TYR TYR A . n A 1 42 ILE 42 42 42 ILE ILE A . n A 1 43 GLN 43 43 43 GLN GLN A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 ALA 45 45 45 ALA ALA A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 GLN 52 52 52 GLN GLN A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 GLU 55 55 55 GLU GLU A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 ASP 58 58 58 ASP ASP A . n A 1 59 THR 59 59 59 THR THR A . n A 1 60 TRP 60 60 60 TRP TRP A . n A 1 61 TYR 61 61 61 TYR TYR A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 PHE 63 63 63 PHE PHE A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 HIS 67 67 67 HIS HIS A . n A 1 68 PRO 68 68 68 PRO PRO A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 TYR 72 72 72 TYR TYR A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 PHE 74 74 74 PHE PHE A . n A 1 75 THR 75 75 75 THR THR A . n A 1 76 SER 76 76 76 SER SER A . n A 1 77 PRO 77 77 77 PRO PRO A . n A 1 78 ASP 78 78 78 ASP ASP A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 ASN 82 82 82 ASN ASN A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 LYS 84 84 84 LYS LYS A . n A 1 85 TYR 85 85 85 TYR TYR A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 ARG 90 90 90 ARG ARG A . n A 1 91 LYS 91 91 91 LYS LYS A . n A 1 92 ARG 92 92 92 ARG ARG A . n A 1 93 PHE 93 93 93 PHE PHE A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 ARG 95 95 95 ARG ARG A . n A 1 96 TRP 96 96 96 TRP TRP A . n A 1 97 ILE 97 97 97 ILE ILE A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 ASP 99 99 99 ASP ASP A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 ASN 102 102 102 ASN ASN A . n A 1 103 ARG 103 103 103 ARG ARG A . n A 1 104 SER 104 104 104 SER SER A . n A 1 105 TYR 105 105 105 TYR TYR A . n A 1 106 ASP 106 106 106 ASP ASP A . n A 1 107 GLN 107 107 107 GLN GLN A . n A 1 108 ALA 108 108 108 ALA ALA A . n A 1 109 TRP 109 109 109 TRP TRP A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 ASP 111 111 111 ASP ASP A . n A 1 112 TYR 112 112 112 TYR TYR A . n A 1 113 GLN 113 113 113 GLN GLN A . n A 1 114 TYR 114 114 114 TYR TYR A . n A 1 115 GLU 115 115 115 GLU GLU A . n A 1 116 ILE 116 116 116 ILE ILE A . n A 1 117 GLY 117 117 117 GLY GLY A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 ARG 119 119 119 ARG ARG A . n A 1 120 HIS 120 120 120 HIS HIS A . n A 1 121 HIS 121 121 121 HIS HIS A . n A 1 122 ARG 122 122 122 ARG ARG A . n A 1 123 THR 123 123 123 THR THR A . n A 1 124 LYS 124 124 124 LYS LYS A . n A 1 125 LYS 125 125 125 LYS LYS A . n A 1 126 ASN 126 126 126 ASN ASN A . n A 1 127 GLN 127 127 127 GLN GLN A . n A 1 128 THR 128 128 128 THR THR A . n A 1 129 ASP 129 129 129 ASP ASP A . n A 1 130 ASN 130 130 130 ASN ASN A . n A 1 131 VAL 131 131 131 VAL VAL A . n A 1 132 GLU 132 132 132 GLU GLU A . n A 1 133 SER 133 133 133 SER SER A . n A 1 134 VAL 134 134 134 VAL VAL A . n A 1 135 PRO 135 135 135 PRO PRO A . n A 1 136 ASN 136 136 136 ASN ASN A . n A 1 137 ILE 137 137 137 ILE ILE A . n A 1 138 GLY 138 138 138 GLY GLY A . n A 1 139 TYR 139 139 139 TYR TYR A . n A 1 140 ARG 140 140 140 ARG ARG A . n A 1 141 TYR 141 141 141 TYR TYR A . n A 1 142 LEU 142 142 142 LEU LEU A . n A 1 143 VAL 143 143 143 VAL VAL A . n A 1 144 ALA 144 144 144 ALA ALA A . n A 1 145 PHE 145 145 145 PHE PHE A . n A 1 146 ILE 146 146 146 ILE ILE A . n A 1 147 TYR 147 147 147 TYR TYR A . n A 1 148 PRO 148 148 148 PRO PRO A . n A 1 149 ILE 149 149 149 ILE ILE A . n A 1 150 THR 150 150 150 THR THR A . n A 1 151 ALA 151 151 151 ALA ALA A . n A 1 152 THR 152 152 152 THR THR A . n A 1 153 MET 153 153 153 MET MET A . n A 1 154 LYS 154 154 154 LYS LYS A . n A 1 155 PRO 155 155 155 PRO PRO A . n A 1 156 PHE 156 156 156 PHE PHE A . n A 1 157 LEU 157 157 157 LEU LEU A . n A 1 158 ALA 158 158 158 ALA ALA A . n A 1 159 ARG 159 159 159 ARG ARG A . n A 1 160 LYS 160 160 160 LYS LYS A . n A 1 161 GLY 161 161 161 GLY GLY A . n A 1 162 HIS 162 162 162 HIS HIS A . n A 1 163 THR 163 163 163 THR THR A . n A 1 164 PRO 164 164 164 PRO PRO A . n A 1 165 GLU 165 165 165 GLU GLU A . n A 1 166 GLU 166 166 166 GLU GLU A . n A 1 167 VAL 167 167 167 VAL VAL A . n A 1 168 GLU 168 168 168 GLU GLU A . n A 1 169 LYS 169 169 169 LYS LYS A . n A 1 170 MET 170 170 170 MET MET A . n A 1 171 TYR 171 171 171 TYR TYR A . n A 1 172 GLN 172 172 172 GLN GLN A . n A 1 173 ALA 173 173 173 ALA ALA A . n A 1 174 TRP 174 174 174 TRP TRP A . n A 1 175 PHE 175 175 175 PHE PHE A . n A 1 176 LYS 176 176 176 LYS LYS A . n A 1 177 ALA 177 177 177 ALA ALA A . n A 1 178 THR 178 178 178 THR THR A . n A 1 179 THR 179 179 179 THR THR A . n A 1 180 LEU 180 180 180 LEU LEU A . n A 1 181 GLN 181 181 181 GLN GLN A . n A 1 182 VAL 182 182 182 VAL VAL A . n A 1 183 ALA 183 183 183 ALA ALA A . n A 1 184 LEU 184 184 184 LEU LEU A . n A 1 185 TRP 185 185 185 TRP TRP A . n A 1 186 SER 186 186 186 SER SER A . n A 1 187 TYR 187 187 187 TYR TYR A . n A 1 188 PRO 188 188 188 PRO PRO A . n A 1 189 TYR 189 189 189 TYR TYR A . n A 1 190 VAL 190 190 190 VAL VAL A . n A 1 191 LYS 191 191 191 LYS LYS A . n A 1 192 TYR 192 192 192 TYR TYR A . n A 1 193 GLY 193 193 193 GLY GLY A . n A 1 194 ASP 194 194 194 ASP ASP A . n A 1 195 PHE 195 195 195 PHE PHE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM 1 200 200 HEM HEM A . C 3 PO4 1 202 202 PO4 PO4 A . D 3 PO4 1 203 203 PO4 PO4 A . E 4 GOL 1 204 204 GOL GOL A . F 5 OXY 1 350 350 OXY OXY A . G 6 HOH 1 2001 2001 HOH HOH A . G 6 HOH 2 2002 2002 HOH HOH A . G 6 HOH 3 2003 2003 HOH HOH A . G 6 HOH 4 2004 2004 HOH HOH A . G 6 HOH 5 2005 2005 HOH HOH A . G 6 HOH 6 2006 2006 HOH HOH A . G 6 HOH 7 2007 2007 HOH HOH A . G 6 HOH 8 2008 2008 HOH HOH A . G 6 HOH 9 2009 2009 HOH HOH A . G 6 HOH 10 2010 2010 HOH HOH A . G 6 HOH 11 2011 2011 HOH HOH A . G 6 HOH 12 2012 2012 HOH HOH A . G 6 HOH 13 2013 2013 HOH HOH A . G 6 HOH 14 2014 2014 HOH HOH A . G 6 HOH 15 2015 2015 HOH HOH A . G 6 HOH 16 2016 2016 HOH HOH A . G 6 HOH 17 2017 2017 HOH HOH A . G 6 HOH 18 2018 2018 HOH HOH A . G 6 HOH 19 2019 2019 HOH HOH A . G 6 HOH 20 2020 2020 HOH HOH A . G 6 HOH 21 2021 2021 HOH HOH A . G 6 HOH 22 2022 2022 HOH HOH A . G 6 HOH 23 2023 2023 HOH HOH A . G 6 HOH 24 2024 2024 HOH HOH A . G 6 HOH 25 2025 2025 HOH HOH A . G 6 HOH 26 2026 2026 HOH HOH A . G 6 HOH 27 2027 2027 HOH HOH A . G 6 HOH 28 2028 2028 HOH HOH A . G 6 HOH 29 2029 2029 HOH HOH A . G 6 HOH 30 2030 2030 HOH HOH A . G 6 HOH 31 2031 2031 HOH HOH A . G 6 HOH 32 2032 2032 HOH HOH A . G 6 HOH 33 2033 2033 HOH HOH A . G 6 HOH 34 2034 2034 HOH HOH A . G 6 HOH 35 2035 2035 HOH HOH A . G 6 HOH 36 2036 2036 HOH HOH A . G 6 HOH 37 2037 2037 HOH HOH A . G 6 HOH 38 2038 2038 HOH HOH A . G 6 HOH 39 2039 2039 HOH HOH A . G 6 HOH 40 2040 2040 HOH HOH A . G 6 HOH 41 2041 2041 HOH HOH A . G 6 HOH 42 2042 2042 HOH HOH A . G 6 HOH 43 2043 2043 HOH HOH A . G 6 HOH 44 2044 2044 HOH HOH A . G 6 HOH 45 2045 2045 HOH HOH A . G 6 HOH 46 2046 2046 HOH HOH A . G 6 HOH 47 2047 2047 HOH HOH A . G 6 HOH 48 2048 2048 HOH HOH A . G 6 HOH 49 2049 2049 HOH HOH A . G 6 HOH 50 2050 2050 HOH HOH A . G 6 HOH 51 2051 2051 HOH HOH A . G 6 HOH 52 2052 2052 HOH HOH A . G 6 HOH 53 2053 2053 HOH HOH A . G 6 HOH 54 2054 2054 HOH HOH A . G 6 HOH 55 2055 2055 HOH HOH A . G 6 HOH 56 2056 2056 HOH HOH A . G 6 HOH 57 2057 2057 HOH HOH A . G 6 HOH 58 2058 2058 HOH HOH A . G 6 HOH 59 2059 2059 HOH HOH A . G 6 HOH 60 2060 2060 HOH HOH A . G 6 HOH 61 2061 2061 HOH HOH A . G 6 HOH 62 2062 2062 HOH HOH A . G 6 HOH 63 2063 2063 HOH HOH A . G 6 HOH 64 2064 2064 HOH HOH A . G 6 HOH 65 2065 2065 HOH HOH A . G 6 HOH 66 2066 2066 HOH HOH A . G 6 HOH 67 2067 2067 HOH HOH A . G 6 HOH 68 2068 2068 HOH HOH A . G 6 HOH 69 2069 2069 HOH HOH A . G 6 HOH 70 2070 2070 HOH HOH A . G 6 HOH 71 2071 2071 HOH HOH A . G 6 HOH 72 2072 2072 HOH HOH A . G 6 HOH 73 2073 2073 HOH HOH A . G 6 HOH 74 2074 2074 HOH HOH A . G 6 HOH 75 2075 2075 HOH HOH A . G 6 HOH 76 2076 2076 HOH HOH A . G 6 HOH 77 2077 2077 HOH HOH A . G 6 HOH 78 2078 2078 HOH HOH A . G 6 HOH 79 2079 2079 HOH HOH A . G 6 HOH 80 2080 2080 HOH HOH A . G 6 HOH 81 2081 2081 HOH HOH A . G 6 HOH 82 2082 2082 HOH HOH A . G 6 HOH 83 2083 2083 HOH HOH A . G 6 HOH 84 2084 2084 HOH HOH A . G 6 HOH 85 2085 2085 HOH HOH A . G 6 HOH 86 2086 2086 HOH HOH A . G 6 HOH 87 2087 2087 HOH HOH A . G 6 HOH 88 2088 2088 HOH HOH A . G 6 HOH 89 2090 2090 HOH HOH A . G 6 HOH 90 2091 2091 HOH HOH A . G 6 HOH 91 2092 2092 HOH HOH A . G 6 HOH 92 2093 2093 HOH HOH A . G 6 HOH 93 2094 2094 HOH HOH A . G 6 HOH 94 2095 2095 HOH HOH A . G 6 HOH 95 2096 2096 HOH HOH A . G 6 HOH 96 2097 2097 HOH HOH A . G 6 HOH 97 2098 2098 HOH HOH A . G 6 HOH 98 2099 2099 HOH HOH A . G 6 HOH 99 2100 2100 HOH HOH A . G 6 HOH 100 2101 2101 HOH HOH A . G 6 HOH 101 2102 2102 HOH HOH A . G 6 HOH 102 2103 2103 HOH HOH A . G 6 HOH 103 2104 2104 HOH HOH A . G 6 HOH 104 2105 2105 HOH HOH A . G 6 HOH 105 2106 2106 HOH HOH A . G 6 HOH 106 2107 2107 HOH HOH A . G 6 HOH 107 2108 2108 HOH HOH A . G 6 HOH 108 2109 2109 HOH HOH A . G 6 HOH 109 2110 2110 HOH HOH A . G 6 HOH 110 2111 2111 HOH HOH A . G 6 HOH 111 2112 2112 HOH HOH A . G 6 HOH 112 2113 2113 HOH HOH A . G 6 HOH 113 2114 2114 HOH HOH A . G 6 HOH 114 2115 2115 HOH HOH A . G 6 HOH 115 2116 2116 HOH HOH A . G 6 HOH 116 2117 2117 HOH HOH A . G 6 HOH 117 2118 2118 HOH HOH A . G 6 HOH 118 2119 2119 HOH HOH A . G 6 HOH 119 2120 2120 HOH HOH A . G 6 HOH 120 2121 2121 HOH HOH A . G 6 HOH 121 2122 2122 HOH HOH A . G 6 HOH 122 2123 2123 HOH HOH A . G 6 HOH 123 2124 2124 HOH HOH A . G 6 HOH 124 2125 2125 HOH HOH A . G 6 HOH 125 2126 2126 HOH HOH A . G 6 HOH 126 2127 2127 HOH HOH A . G 6 HOH 127 2128 2128 HOH HOH A . G 6 HOH 128 2129 2129 HOH HOH A . G 6 HOH 129 2130 2130 HOH HOH A . G 6 HOH 130 2131 2131 HOH HOH A . G 6 HOH 131 2132 2132 HOH HOH A . G 6 HOH 132 2133 2133 HOH HOH A . G 6 HOH 133 2135 2135 HOH HOH A . G 6 HOH 134 2136 2136 HOH HOH A . G 6 HOH 135 2137 2137 HOH HOH A . G 6 HOH 136 2138 2138 HOH HOH A . G 6 HOH 137 2139 2139 HOH HOH A . G 6 HOH 138 2140 2140 HOH HOH A . G 6 HOH 139 2141 2141 HOH HOH A . G 6 HOH 140 2142 2142 HOH HOH A . G 6 HOH 141 2143 2143 HOH HOH A . G 6 HOH 142 2144 2144 HOH HOH A . G 6 HOH 143 2145 2145 HOH HOH A . G 6 HOH 144 2146 2146 HOH HOH A . G 6 HOH 145 2147 2147 HOH HOH A . G 6 HOH 146 2148 2148 HOH HOH A . G 6 HOH 147 2149 2149 HOH HOH A . G 6 HOH 148 2150 2150 HOH HOH A . G 6 HOH 149 2151 2151 HOH HOH A . G 6 HOH 150 2152 2152 HOH HOH A . G 6 HOH 151 2153 2153 HOH HOH A . G 6 HOH 152 2154 2154 HOH HOH A . G 6 HOH 153 2155 2155 HOH HOH A . G 6 HOH 154 2156 2156 HOH HOH A . G 6 HOH 155 2157 2157 HOH HOH A . G 6 HOH 156 2158 2158 HOH HOH A . G 6 HOH 157 2159 2159 HOH HOH A . G 6 HOH 158 2160 2160 HOH HOH A . G 6 HOH 159 2161 2161 HOH HOH A . G 6 HOH 160 2162 2162 HOH HOH A . G 6 HOH 161 2163 2163 HOH HOH A . G 6 HOH 162 2164 2164 HOH HOH A . G 6 HOH 163 2165 2165 HOH HOH A . G 6 HOH 164 2166 2166 HOH HOH A . G 6 HOH 165 2167 2167 HOH HOH A . G 6 HOH 166 2168 2168 HOH HOH A . G 6 HOH 167 2169 2169 HOH HOH A . G 6 HOH 168 2170 2170 HOH HOH A . G 6 HOH 169 2171 2171 HOH HOH A . G 6 HOH 170 2172 2172 HOH HOH A . G 6 HOH 171 2173 2173 HOH HOH A . G 6 HOH 172 2174 2174 HOH HOH A . G 6 HOH 173 2175 2175 HOH HOH A . G 6 HOH 174 2176 2176 HOH HOH A . G 6 HOH 175 2177 2177 HOH HOH A . G 6 HOH 176 2178 2178 HOH HOH A . G 6 HOH 177 2179 2179 HOH HOH A . G 6 HOH 178 2180 2180 HOH HOH A . G 6 HOH 179 2181 2181 HOH HOH A . G 6 HOH 180 2182 2182 HOH HOH A . G 6 HOH 181 2183 2183 HOH HOH A . G 6 HOH 182 2184 2184 HOH HOH A . G 6 HOH 183 2185 2185 HOH HOH A . G 6 HOH 184 2186 2186 HOH HOH A . G 6 HOH 185 2187 2187 HOH HOH A . G 6 HOH 186 2188 2188 HOH HOH A . G 6 HOH 187 2189 2189 HOH HOH A . G 6 HOH 188 2190 2190 HOH HOH A . G 6 HOH 189 2191 2191 HOH HOH A . G 6 HOH 190 2192 2192 HOH HOH A . G 6 HOH 191 2193 2193 HOH HOH A . G 6 HOH 192 2194 2194 HOH HOH A . G 6 HOH 193 2195 2195 HOH HOH A . G 6 HOH 194 2196 2196 HOH HOH A . G 6 HOH 195 2197 2197 HOH HOH A . G 6 HOH 196 2198 2198 HOH HOH A . G 6 HOH 197 2199 2199 HOH HOH A . G 6 HOH 198 2200 2200 HOH HOH A . G 6 HOH 199 2201 2201 HOH HOH A . G 6 HOH 200 2202 2202 HOH HOH A . G 6 HOH 201 2203 2203 HOH HOH A . G 6 HOH 202 2204 2204 HOH HOH A . G 6 HOH 203 2205 2205 HOH HOH A . G 6 HOH 204 2206 2206 HOH HOH A . G 6 HOH 205 2207 2207 HOH HOH A . G 6 HOH 206 2208 2208 HOH HOH A . G 6 HOH 207 2209 2209 HOH HOH A . G 6 HOH 208 2210 2210 HOH HOH A . G 6 HOH 209 2211 2211 HOH HOH A . G 6 HOH 210 2212 2212 HOH HOH A . G 6 HOH 211 2213 2213 HOH HOH A . G 6 HOH 212 2214 2214 HOH HOH A . G 6 HOH 213 2215 2215 HOH HOH A . G 6 HOH 214 2216 2216 HOH HOH A . G 6 HOH 215 2217 2217 HOH HOH A . G 6 HOH 216 2218 2218 HOH HOH A . G 6 HOH 217 2219 2219 HOH HOH A . G 6 HOH 218 2220 2220 HOH HOH A . G 6 HOH 219 2221 2221 HOH HOH A . G 6 HOH 220 2222 2222 HOH HOH A . G 6 HOH 221 2223 2223 HOH HOH A . G 6 HOH 222 2224 2224 HOH HOH A . G 6 HOH 223 2225 2225 HOH HOH A . G 6 HOH 224 2226 2226 HOH HOH A . G 6 HOH 225 2227 2227 HOH HOH A . G 6 HOH 226 2228 2228 HOH HOH A . G 6 HOH 227 2229 2229 HOH HOH A . G 6 HOH 228 2230 2230 HOH HOH A . G 6 HOH 229 2231 2231 HOH HOH A . G 6 HOH 230 2232 2232 HOH HOH A . G 6 HOH 231 2233 2233 HOH HOH A . G 6 HOH 232 2234 2234 HOH HOH A . G 6 HOH 233 2235 2235 HOH HOH A . G 6 HOH 234 2236 2236 HOH HOH A . G 6 HOH 235 2237 2237 HOH HOH A . G 6 HOH 236 2238 2238 HOH HOH A . G 6 HOH 237 2240 2240 HOH HOH A . G 6 HOH 238 2241 2241 HOH HOH A . G 6 HOH 239 2242 2242 HOH HOH A . G 6 HOH 240 2243 2243 HOH HOH A . G 6 HOH 241 2244 2244 HOH HOH A . G 6 HOH 242 2245 2245 HOH HOH A . G 6 HOH 243 2246 2246 HOH HOH A . G 6 HOH 244 2248 2248 HOH HOH A . G 6 HOH 245 2249 2249 HOH HOH A . G 6 HOH 246 2250 2250 HOH HOH A . G 6 HOH 247 2251 2251 HOH HOH A . G 6 HOH 248 2252 2252 HOH HOH A . G 6 HOH 249 2253 2253 HOH HOH A . G 6 HOH 250 2254 2254 HOH HOH A . G 6 HOH 251 2255 2255 HOH HOH A . G 6 HOH 252 2256 2256 HOH HOH A . G 6 HOH 253 2257 2257 HOH HOH A . G 6 HOH 254 2258 2258 HOH HOH A . G 6 HOH 255 2259 2259 HOH HOH A . G 6 HOH 256 2260 2260 HOH HOH A . G 6 HOH 257 2261 2261 HOH HOH A . G 6 HOH 258 2262 2262 HOH HOH A . G 6 HOH 259 2263 2263 HOH HOH A . G 6 HOH 260 2264 2264 HOH HOH A . G 6 HOH 261 2265 2265 HOH HOH A . G 6 HOH 262 2266 2266 HOH HOH A . G 6 HOH 263 2267 2267 HOH HOH A . G 6 HOH 264 2268 2268 HOH HOH A . G 6 HOH 265 2269 2269 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7790 ? 1 MORE -93.1 ? 1 'SSA (A^2)' 16000 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O1 ? F OXY . ? A OXY 350 ? 1_555 FE ? B HEM . ? A HEM 200 ? 1_555 NA ? B HEM . ? A HEM 200 ? 1_555 90.9 ? 2 O1 ? F OXY . ? A OXY 350 ? 1_555 FE ? B HEM . ? A HEM 200 ? 1_555 NB ? B HEM . ? A HEM 200 ? 1_555 86.3 ? 3 NA ? B HEM . ? A HEM 200 ? 1_555 FE ? B HEM . ? A HEM 200 ? 1_555 NB ? B HEM . ? A HEM 200 ? 1_555 90.8 ? 4 O1 ? F OXY . ? A OXY 350 ? 1_555 FE ? B HEM . ? A HEM 200 ? 1_555 NC ? B HEM . ? A HEM 200 ? 1_555 81.5 ? 5 NA ? B HEM . ? A HEM 200 ? 1_555 FE ? B HEM . ? A HEM 200 ? 1_555 NC ? B HEM . ? A HEM 200 ? 1_555 172.3 ? 6 NB ? B HEM . ? A HEM 200 ? 1_555 FE ? B HEM . ? A HEM 200 ? 1_555 NC ? B HEM . ? A HEM 200 ? 1_555 89.8 ? 7 O1 ? F OXY . ? A OXY 350 ? 1_555 FE ? B HEM . ? A HEM 200 ? 1_555 ND ? B HEM . ? A HEM 200 ? 1_555 85.4 ? 8 NA ? B HEM . ? A HEM 200 ? 1_555 FE ? B HEM . ? A HEM 200 ? 1_555 ND ? B HEM . ? A HEM 200 ? 1_555 88.6 ? 9 NB ? B HEM . ? A HEM 200 ? 1_555 FE ? B HEM . ? A HEM 200 ? 1_555 ND ? B HEM . ? A HEM 200 ? 1_555 171.6 ? 10 NC ? B HEM . ? A HEM 200 ? 1_555 FE ? B HEM . ? A HEM 200 ? 1_555 ND ? B HEM . ? A HEM 200 ? 1_555 89.7 ? 11 O1 ? F OXY . ? A OXY 350 ? 1_555 FE ? B HEM . ? A HEM 200 ? 1_555 NE2 ? A HIS 120 ? A HIS 120 ? 1_555 178.1 ? 12 NA ? B HEM . ? A HEM 200 ? 1_555 FE ? B HEM . ? A HEM 200 ? 1_555 NE2 ? A HIS 120 ? A HIS 120 ? 1_555 89.9 ? 13 NB ? B HEM . ? A HEM 200 ? 1_555 FE ? B HEM . ? A HEM 200 ? 1_555 NE2 ? A HIS 120 ? A HIS 120 ? 1_555 95.4 ? 14 NC ? B HEM . ? A HEM 200 ? 1_555 FE ? B HEM . ? A HEM 200 ? 1_555 NE2 ? A HIS 120 ? A HIS 120 ? 1_555 97.6 ? 15 ND ? B HEM . ? A HEM 200 ? 1_555 FE ? B HEM . ? A HEM 200 ? 1_555 NE2 ? A HIS 120 ? A HIS 120 ? 1_555 92.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-01-22 2 'Structure model' 1 1 2012-08-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Derived calculations' 3 2 'Structure model' 'Non-polymer description' 4 2 'Structure model' Other 5 2 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 SOLVE phasing . ? 4 # _pdbx_database_remark.id 650 _pdbx_database_remark.text ; HELIX DETERMINATION METHOD: AUTHOR PROVIDED. ; # _pdbx_entry_details.entry_id 2VEB _pdbx_entry_details.compound_details 'ENGINEERED RESIDUE IN CHAIN A, CYS 101 TO SER' _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 13 ? ? -145.29 25.72 2 1 ASP A 106 ? ? -115.92 -165.95 3 1 ASN A 126 ? ? 75.29 -2.73 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 2004 ? 6.29 . 2 1 O ? A HOH 2012 ? 6.62 . 3 1 O ? A HOH 2025 ? 5.86 . 4 1 O ? A HOH 2042 ? 5.86 . 5 1 O ? A HOH 2096 ? 7.51 . 6 1 O ? A HOH 2139 ? 6.50 . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A SER 2 ? A SER 2 3 1 Y 1 A VAL 3 ? A VAL 3 4 1 Y 1 A GLU 4 ? A GLU 4 5 1 Y 1 A LYS 5 ? A LYS 5 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PROTOPORPHYRIN IX CONTAINING FE' HEM 3 'PHOSPHATE ION' PO4 4 GLYCEROL GOL 5 'OXYGEN MOLECULE' OXY 6 water HOH #