HEADER ISOMERASE 24-OCT-07 2VEJ OBSLTE 18-MAR-08 2VEJ 2VNQ TITLE MONOCLINIC FORM OF IDI-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE; COMPND 3 SYNONYM: ISOPENTENYL DIPHOSPHATE ISOMERASE, IPP ISOMERASE, COMPND 4 ISOPENTENYL PYROPHOSPHATE ISOMERASE, IPP DMAPP ISOMERASE; COMPND 5 CHAIN: A, B; COMPND 6 EC: 5.3.3.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 3 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 4 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI KEYWDS ISOPRENE BIOSYNTHESIS, KEYWDS 2 POLYMORPHISM, METAL-BINDING, IPP ISOMERASE, KEYWDS 3 MANGANESE, CYTOPLASM, ISOMERASE, MAGNESIUM EXPDTA X-RAY DIFFRACTION AUTHOR J.DE RUYCK,Y.OUDJAMA,J.WOUTERS REVDAT 2 18-MAR-08 2VEJ 1 OBSLTE REVDAT 1 30-OCT-07 2VEJ 0 JRNL AUTH J.DE RUYCK,Y.OUDJAMA,J.WOUTERS JRNL TITL MONOCLINIC FORM ISOPENTENYLDISPHOSPHATE ISOMERASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.2 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 98.23 REMARK 3 NUMBER OF REFLECTIONS : 17234 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.20064 REMARK 3 R VALUE (WORKING SET) : 0.19717 REMARK 3 FREE R VALUE : 0.26659 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.2 REMARK 3 FREE R VALUE TEST SET COUNT : 937 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.199 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.256 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1235 REMARK 3 BIN R VALUE (WORKING SET) : 0.231 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2821 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 74 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.449 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.15 REMARK 3 B22 (A**2) : 0.02 REMARK 3 B33 (A**2) : -0.14 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.08 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.318 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.246 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.162 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.240 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED (A): 2895 ; 0.028 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED (DEGREES): 3951 ; 2.195 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 354 ; 7.768 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 137 ;34.510 ;23.285 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 454 ;18.322 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;23.849 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 436 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED (A): 2240 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED (A): 1288 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED (A): 1911 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED (A): 114 ; 0.206 ; 0.200 REMARK 3 SYMMETRY VDW REFINED (A): 39 ; 0.190 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED (A): 6 ; 0.237 ; 0.200 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED (A**2): 1838 ; 1.218 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED (A**2): 2878 ; 2.036 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED (A**2): 1253 ; 3.469 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED (A**2): 1073 ; 4.883 ; 4.500 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2VEJ COMPLIES WITH FORMAT V. 3.1, 01-AUG-2007 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY EBI ON 24-OCT-2007. REMARK 100 THE EBI ID CODE IS EBI-34212. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF BEAMLINE BM30A REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17775 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.20 REMARK 200 RESOLUTION RANGE LOW (A) : 60.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 2.5 REMARK 200 R MERGE (I) : 0.06 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.55000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK ALSO PROVIDES INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 THR A 3 REMARK 465 GLN A 180 REMARK 465 LEU A 181 REMARK 465 LYS A 182 REMARK 465 LEU A 183 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 THR B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR B 107 - O HOH B 2029 2.17 REMARK 500 O HOH A 2008 - O HOH A 2010 1.74 REMARK 500 O HOH B 2014 - O HOH B 2038 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,1X,2(A4,A1,3X),12X,F5.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCELIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 21 CD LYS A 21 CE 0.151 REMARK 500 LYS A 21 CE LYS A 21 NZ 0.178 REMARK 500 GLU A 170 CB GLU A 170 CG 0.132 REMARK 500 LYS B 21 CD LYS B 21 CE 0.207 REMARK 500 ARG B 174 CZ ARG B 174 NH2 0.091 REMARK 500 CYS A 142 CB CYS A 142 SG -0.116 REMARK 500 CYS B 142 CB CYS B 142 SG -0.123 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCELIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 19 CA - CB - CG ANGL. DEV. = 14.5 DEGREES REMARK 500 LYS A 21 CD - CE - NZ ANGL. DEV. = 16.9 DEGREES REMARK 500 ARG A 30 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 30 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 LYS B 21 CD - CE - NZ ANGL. DEV. = 19.2 DEGREES REMARK 500 ARG B 30 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 30 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 174 NE - CZ - NH1 ANGL. DEV. = -7.7 DEGREES REMARK 500 ARG B 174 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 CYS A 67 CA - CB - SG ANGL. DEV. = -8.0 DEGREES REMARK 500 CYS A 142 CB - CA - C ANGL. DEV. = -8.7 DEGREES REMARK 500 CYS B 142 CB - CA - C ANGL. DEV. = -7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 28 35.15 -148.28 REMARK 500 THR A 29 125.60 -39.53 REMARK 500 TRP A 58 48.89 37.24 REMARK 500 TYR A 99 80.30 -159.75 REMARK 500 TRP B 58 50.61 38.14 REMARK 500 TYR B 99 78.92 -153.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1180 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 114 OE2 REMARK 620 2 HIS A 25 NE2 97.2 REMARK 620 3 GLU A 114 OE1 57.0 91.6 REMARK 620 4 HIS A 32 NE2 93.9 87.9 150.7 REMARK 620 5 HIS A 69 NE2 161.1 94.9 108.3 101.0 REMARK 620 6 GLU A 116 OE2 85.0 176.7 87.6 94.3 82.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B1184 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 32 NE2 REMARK 620 2 GLU B 114 OE2 96.2 REMARK 620 3 GLU B 116 OE2 99.9 84.3 REMARK 620 4 HIS B 25 NE2 84.8 86.4 170.0 REMARK 620 5 HIS B 69 NE2 105.1 157.9 86.4 101.0 REMARK 620 6 GLU B 114 OE1 152.1 57.0 86.2 85.6 102.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 SITE_DESCRIPTION: MN BINDING SITE FOR CHAIN A REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 SITE_DESCRIPTION: MN BINDING SITE FOR CHAIN B REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NFS RELATED DB: PDB REMARK 900 STRUCTURE AND MECHANISM OF ACTION REMARK 900 OFISOPENTENYLPYROPHOSPHATE- REMARK 900 DIMETHYLALLYLPYROPHOSPHATEISOMERASE: COMPLEX WITH REMARK 900 NIPP REMARK 900 RELATED ID: 1Q54 RELATED DB: PDB REMARK 900 STRUCTURE AND MECHANISM OF ACTION REMARK 900 OFISOPENTENYLPYROPHOSPHATE- REMARK 900 DIMETHYLALLYLPYROPHOSPHATEISOMERASE: COMPLEX WITH REMARK 900 THE BROMOHYDRINE OF IPP REMARK 900 RELATED ID: 1PPV RELATED DB: PDB REMARK 900 ISOPENTENYLPYROPHOSPHATE- REMARK 900 DIMETHYLALLYLPYROPHOSPHATEISOMERASE IN COMPLEX REMARK 900 WITH THE BROMOHYDRINE OF IPP REMARK 900 RELATED ID: 1OW2 RELATED DB: PDB REMARK 900 STRUCTURE AND MECHANISM OF ACTION REMARK 900 OFISOPENTENYLPYROPHOSPHATE- REMARK 900 DIMETHYLALLYLPYROPHOSPHATEISOMERASE: COMPLEX OF REMARK 900 C67A MUTANT WITH EIPP REMARK 900 RELATED ID: 1PPW RELATED DB: PDB REMARK 900 ISOPENTENYLPYROPHOSPHATE- REMARK 900 DIMETHYLALLYLPYROPHOSPHATEISOMERASE IN COMPLEX REMARK 900 WITH THE BROMOHYDRINE OF IPP REMARK 900 RELATED ID: 1X84 RELATED DB: PDB REMARK 900 IPP ISOMERASE (WT) REACTED WITH (S)- REMARK 900 BROMOHYDRINE OF IPP REMARK 900 RELATED ID: 1R67 RELATED DB: PDB REMARK 900 Y104A MUTANT OF E.COLI IPP ISOMERASE REMARK 900 RELATED ID: 1I9A RELATED DB: PDB REMARK 900 STRUCTURAL STUDIES OF CHOLESTEROL BIOSYNTHESIS REMARK 900 : MEVALONATE5-DIPHOSPHATE DECARBOXYLASE AND REMARK 900 ISOPENTENYL DIPHOSPHATEISOMERASE REMARK 900 RELATED ID: 1NFZ RELATED DB: PDB REMARK 900 STRUCTURE AND MECHANISM OF ACTION REMARK 900 OFISOPENTENYLPYROPHOSPHATE- REMARK 900 DIMETHYLALLYLPYROPHOSPHATEISOMERASE: COMPLEX WITH REMARK 900 EIPP REMARK 900 RELATED ID: 1HX3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E.COLI REMARK 900 ISOPENTENYLDIPHOSPHATE:DIMETHYLALLYL DIPHOSPHATE REMARK 900 ISOMERASE REMARK 900 RELATED ID: 1X83 RELATED DB: PDB REMARK 900 Y104F IPP ISOMERASE REACTED WITH (S)- REMARK 900 BROMOHYDRINE OF IPP REMARK 900 RELATED ID: 1HZT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF METAL-FREE REMARK 900 ISOPENTENYLDIPHOSPHATE:DIMETHYLALLYL DIPHOSPHATE REMARK 900 ISOMERASE REMARK 900 RELATED ID: 1PVF RELATED DB: PDB REMARK 900 E.COLI IPP ISOMERASE IN COMPLEX WITH REMARK 900 DIPHOSPHATE REMARK 900 RELATED ID: 2VEH RELATED DB: PDB REMARK 900 MONOCLINIC FORM OF IDI-1 DBREF 2VEJ A 1 182 UNP Q46822 IDI_ECOLI 1 182 DBREF 2VEJ A 183 183 PDB 2VEJ 2VEJ 183 183 DBREF 2VEJ B 1 182 UNP Q46822 IDI_ECOLI 1 182 DBREF 2VEJ B 183 183 PDB 2VEJ 2VEJ 183 183 SEQRES 1 A 183 MET GLN THR GLU HIS VAL ILE LEU LEU ASN ALA GLN GLY SEQRES 2 A 183 VAL PRO THR GLY THR LEU GLU LYS TYR ALA ALA HIS THR SEQRES 3 A 183 ALA ASP THR ARG LEU HIS LEU ALA PHE SER SER TRP LEU SEQRES 4 A 183 PHE ASN ALA LYS GLY GLN LEU LEU VAL THR ARG ARG ALA SEQRES 5 A 183 LEU SER LYS LYS ALA TRP PRO GLY VAL TRP THR ASN SER SEQRES 6 A 183 VAL CYS GLY HIS PRO GLN LEU GLY GLU SER ASN GLU ASP SEQRES 7 A 183 ALA VAL ILE ARG ARG CYS ARG TYR GLU LEU GLY VAL GLU SEQRES 8 A 183 ILE THR PRO PRO GLU SER ILE TYR PRO ASP PHE ARG TYR SEQRES 9 A 183 ARG ALA THR ASP PRO SER GLY ILE VAL GLU ASN GLU VAL SEQRES 10 A 183 CYS PRO VAL PHE ALA ALA ARG THR THR SER ALA LEU GLN SEQRES 11 A 183 ILE ASN ASP ASP GLU VAL MET ASP TYR GLN TRP CYS ASP SEQRES 12 A 183 LEU ALA ASP VAL LEU HIS GLY ILE ASP ALA THR PRO TRP SEQRES 13 A 183 ALA PHE SER PRO TRP MET VAL MET GLN ALA THR ASN ARG SEQRES 14 A 183 GLU ALA ARG LYS ARG LEU SER ALA PHE THR GLN LEU LYS SEQRES 15 A 183 LEU SEQRES 1 B 183 MET GLN THR GLU HIS VAL ILE LEU LEU ASN ALA GLN GLY SEQRES 2 B 183 VAL PRO THR GLY THR LEU GLU LYS TYR ALA ALA HIS THR SEQRES 3 B 183 ALA ASP THR ARG LEU HIS LEU ALA PHE SER SER TRP LEU SEQRES 4 B 183 PHE ASN ALA LYS GLY GLN LEU LEU VAL THR ARG ARG ALA SEQRES 5 B 183 LEU SER LYS LYS ALA TRP PRO GLY VAL TRP THR ASN SER SEQRES 6 B 183 VAL CYS GLY HIS PRO GLN LEU GLY GLU SER ASN GLU ASP SEQRES 7 B 183 ALA VAL ILE ARG ARG CYS ARG TYR GLU LEU GLY VAL GLU SEQRES 8 B 183 ILE THR PRO PRO GLU SER ILE TYR PRO ASP PHE ARG TYR SEQRES 9 B 183 ARG ALA THR ASP PRO SER GLY ILE VAL GLU ASN GLU VAL SEQRES 10 B 183 CYS PRO VAL PHE ALA ALA ARG THR THR SER ALA LEU GLN SEQRES 11 B 183 ILE ASN ASP ASP GLU VAL MET ASP TYR GLN TRP CYS ASP SEQRES 12 B 183 LEU ALA ASP VAL LEU HIS GLY ILE ASP ALA THR PRO TRP SEQRES 13 B 183 ALA PHE SER PRO TRP MET VAL MET GLN ALA THR ASN ARG SEQRES 14 B 183 GLU ALA ARG LYS ARG LEU SER ALA PHE THR GLN LEU LYS SEQRES 15 B 183 LEU HET MN A1180 1 HET MN B1184 1 HETNAM MN MANGANESE (II) ION FORMUL 3 MN 2(MN 2+) FORMUL 4 HOH *74(H2 O1) HELIX 1 1 LYS A 21 HIS A 25 1 5 HELIX 2 2 SER A 75 GLY A 89 1 15 HELIX 3 3 ASP A 143 THR A 154 1 12 HELIX 4 4 PRO A 155 ALA A 157 5 3 HELIX 5 5 SER A 159 THR A 167 1 9 HELIX 6 6 ASN A 168 THR A 179 1 12 HELIX 7 7 LYS B 21 HIS B 25 1 5 HELIX 8 8 SER B 75 GLY B 89 1 15 HELIX 9 9 ASP B 143 THR B 154 1 12 HELIX 10 10 PRO B 155 ALA B 157 5 3 HELIX 11 11 SER B 159 ASN B 168 1 10 HELIX 12 12 ASN B 168 PHE B 178 1 11 SHEET 1 AA 2 HIS A 5 LEU A 9 0 SHEET 2 AA 2 PRO A 15 GLU A 20 -1 N THR A 16 O LEU A 8 SHEET 1 AB 3 HIS A 32 LEU A 33 0 SHEET 2 AB 3 VAL A 113 VAL A 117 1 O ASN A 115 N HIS A 32 SHEET 3 AB 3 ARG A 103 THR A 107 -1 O TYR A 104 N GLU A 116 SHEET 1 AC 4 VAL A 66 GLY A 68 0 SHEET 2 AC 4 PHE A 35 PHE A 40 -1 O PHE A 35 N GLY A 68 SHEET 3 AC 4 VAL A 120 ARG A 124 1 O PHE A 121 N TRP A 38 SHEET 4 AC 4 GLU A 96 TYR A 99 -1 O GLU A 96 N ALA A 122 SHEET 1 AD 3 TRP A 62 THR A 63 0 SHEET 2 AD 3 LEU A 46 ARG A 51 -1 O THR A 49 N THR A 63 SHEET 3 AD 3 VAL A 136 CYS A 142 -1 N MET A 137 O ARG A 50 SHEET 1 BA 2 HIS B 5 LEU B 9 0 SHEET 2 BA 2 PRO B 15 GLU B 20 -1 N THR B 16 O LEU B 8 SHEET 1 BB 3 HIS B 32 LEU B 33 0 SHEET 2 BB 3 VAL B 113 VAL B 117 1 O ASN B 115 N HIS B 32 SHEET 3 BB 3 ARG B 103 THR B 107 -1 O TYR B 104 N GLU B 116 SHEET 1 BC 4 VAL B 66 GLY B 68 0 SHEET 2 BC 4 PHE B 35 PHE B 40 -1 O PHE B 35 N GLY B 68 SHEET 3 BC 4 VAL B 120 ARG B 124 1 O PHE B 121 N TRP B 38 SHEET 4 BC 4 GLU B 96 TYR B 99 -1 O GLU B 96 N ALA B 122 SHEET 1 BD 3 TRP B 62 THR B 63 0 SHEET 2 BD 3 LEU B 46 ARG B 51 -1 O THR B 49 N THR B 63 SHEET 3 BD 3 VAL B 136 CYS B 142 -1 N MET B 137 O ARG B 50 LINK MN MN A1180 OE2 GLU A 114 1555 1555 1.99 LINK MN MN A1180 NE2 HIS A 25 1555 1555 2.25 LINK MN MN A1180 OE1 GLU A 114 1555 1555 2.51 LINK MN MN A1180 NE2 HIS A 32 1555 1555 2.16 LINK MN MN A1180 NE2 HIS A 69 1555 1555 2.17 LINK MN MN A1180 OE2 GLU A 116 1555 1555 2.00 LINK MN MN B1184 OE2 GLU B 114 1555 1555 2.17 LINK MN MN B1184 OE2 GLU B 116 1555 1555 1.91 LINK MN MN B1184 NE2 HIS B 25 1555 1555 2.15 LINK MN MN B1184 NE2 HIS B 69 1555 1555 2.15 LINK MN MN B1184 OE1 GLU B 114 1555 1555 2.43 LINK MN MN B1184 NE2 HIS B 32 1555 1555 2.12 SITE 1 AC1 5 HIS A 25 HIS A 32 HIS A 69 GLU A 114 SITE 2 AC1 5 GLU A 116 SITE 1 AC2 5 HIS B 25 HIS B 32 HIS B 69 GLU B 114 SITE 2 AC2 5 GLU B 116 CRYST1 43.200 69.100 62.400 90.00 100.30 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023148 0.000000 0.004207 0.00000 SCALE2 0.000000 0.014472 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016288 0.00000