data_2VEZ # _entry.id 2VEZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2VEZ PDBE EBI-34253 WWPDB D_1290034253 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2VXK _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'STRUCTURAL COMPARISON BETWEEN ASPERGILLUS FUMIGATUS AND HUMAN GNA1' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2VEZ _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2007-10-27 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hurtado-Guerrero, R.' 1 'Raimi, O.' 2 'Shepherd, S.' 3 'van Aalten, D.M.F.' 4 # _citation.id primary _citation.title 'Glucose-6-Phosphate as a Probe for the Glucosamine- 6-Phosphate N-Acetyltransferase Michaelis Complex.' _citation.journal_abbrev 'FEBS Lett.' _citation.journal_volume 581 _citation.page_first 5597 _citation.page_last ? _citation.year 2007 _citation.journal_id_ASTM FEBLAL _citation.country NE _citation.journal_id_ISSN 0014-5793 _citation.journal_id_CSD 0165 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18005663 _citation.pdbx_database_id_DOI 10.1016/J.FEBSLET.2007.10.065 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hurtado-Guerrero, R.' 1 ? primary 'Raimi, O.' 2 ? primary 'Shepherd, S.' 3 ? primary 'Van Aalten, D.M.F.' 4 ? # _cell.entry_id 2VEZ _cell.length_a 70.677 _cell.length_b 100.541 _cell.length_c 55.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VEZ _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PUTATIVE GLUCOSAMINE 6-PHOSPHATE ACETYLTRANSFERASE' 21126.113 1 2.3.1.4 ? ? ? 2 non-polymer syn 'ACETYL COENZYME *A' 809.571 1 ? ? ? ? 3 non-polymer man 6-O-phosphono-alpha-D-glucopyranose 260.136 1 ? ? ? ? 4 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 5 water nat water 18.015 204 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'GLUCOSAMINE-6-PHOSPHATE N-ACETYLTRANSFERASE' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MTNATIAPTTTAAPVTKSVDAPTADENTPLFSPSLISPDVLAVLPADYTIRPLCRSDYKRGYLDVLRVLTTVGDINEEQW NSRYEWIRARSDEYYLLVVCDGEGRIVGTGSLVVERKFIHSLGMVGHIEDIAVEKGQQGKKLGLRIIQALDYVAEKVGCY KTILDCSEANEGFYIKCGFKRAGLEMAHYY ; _entity_poly.pdbx_seq_one_letter_code_can ;MTNATIAPTTTAAPVTKSVDAPTADENTPLFSPSLISPDVLAVLPADYTIRPLCRSDYKRGYLDVLRVLTTVGDINEEQW NSRYEWIRARSDEYYLLVVCDGEGRIVGTGSLVVERKFIHSLGMVGHIEDIAVEKGQQGKKLGLRIIQALDYVAEKVGCY KTILDCSEANEGFYIKCGFKRAGLEMAHYY ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 THR n 1 3 ASN n 1 4 ALA n 1 5 THR n 1 6 ILE n 1 7 ALA n 1 8 PRO n 1 9 THR n 1 10 THR n 1 11 THR n 1 12 ALA n 1 13 ALA n 1 14 PRO n 1 15 VAL n 1 16 THR n 1 17 LYS n 1 18 SER n 1 19 VAL n 1 20 ASP n 1 21 ALA n 1 22 PRO n 1 23 THR n 1 24 ALA n 1 25 ASP n 1 26 GLU n 1 27 ASN n 1 28 THR n 1 29 PRO n 1 30 LEU n 1 31 PHE n 1 32 SER n 1 33 PRO n 1 34 SER n 1 35 LEU n 1 36 ILE n 1 37 SER n 1 38 PRO n 1 39 ASP n 1 40 VAL n 1 41 LEU n 1 42 ALA n 1 43 VAL n 1 44 LEU n 1 45 PRO n 1 46 ALA n 1 47 ASP n 1 48 TYR n 1 49 THR n 1 50 ILE n 1 51 ARG n 1 52 PRO n 1 53 LEU n 1 54 CYS n 1 55 ARG n 1 56 SER n 1 57 ASP n 1 58 TYR n 1 59 LYS n 1 60 ARG n 1 61 GLY n 1 62 TYR n 1 63 LEU n 1 64 ASP n 1 65 VAL n 1 66 LEU n 1 67 ARG n 1 68 VAL n 1 69 LEU n 1 70 THR n 1 71 THR n 1 72 VAL n 1 73 GLY n 1 74 ASP n 1 75 ILE n 1 76 ASN n 1 77 GLU n 1 78 GLU n 1 79 GLN n 1 80 TRP n 1 81 ASN n 1 82 SER n 1 83 ARG n 1 84 TYR n 1 85 GLU n 1 86 TRP n 1 87 ILE n 1 88 ARG n 1 89 ALA n 1 90 ARG n 1 91 SER n 1 92 ASP n 1 93 GLU n 1 94 TYR n 1 95 TYR n 1 96 LEU n 1 97 LEU n 1 98 VAL n 1 99 VAL n 1 100 CYS n 1 101 ASP n 1 102 GLY n 1 103 GLU n 1 104 GLY n 1 105 ARG n 1 106 ILE n 1 107 VAL n 1 108 GLY n 1 109 THR n 1 110 GLY n 1 111 SER n 1 112 LEU n 1 113 VAL n 1 114 VAL n 1 115 GLU n 1 116 ARG n 1 117 LYS n 1 118 PHE n 1 119 ILE n 1 120 HIS n 1 121 SER n 1 122 LEU n 1 123 GLY n 1 124 MET n 1 125 VAL n 1 126 GLY n 1 127 HIS n 1 128 ILE n 1 129 GLU n 1 130 ASP n 1 131 ILE n 1 132 ALA n 1 133 VAL n 1 134 GLU n 1 135 LYS n 1 136 GLY n 1 137 GLN n 1 138 GLN n 1 139 GLY n 1 140 LYS n 1 141 LYS n 1 142 LEU n 1 143 GLY n 1 144 LEU n 1 145 ARG n 1 146 ILE n 1 147 ILE n 1 148 GLN n 1 149 ALA n 1 150 LEU n 1 151 ASP n 1 152 TYR n 1 153 VAL n 1 154 ALA n 1 155 GLU n 1 156 LYS n 1 157 VAL n 1 158 GLY n 1 159 CYS n 1 160 TYR n 1 161 LYS n 1 162 THR n 1 163 ILE n 1 164 LEU n 1 165 ASP n 1 166 CYS n 1 167 SER n 1 168 GLU n 1 169 ALA n 1 170 ASN n 1 171 GLU n 1 172 GLY n 1 173 PHE n 1 174 TYR n 1 175 ILE n 1 176 LYS n 1 177 CYS n 1 178 GLY n 1 179 PHE n 1 180 LYS n 1 181 ARG n 1 182 ALA n 1 183 GLY n 1 184 LEU n 1 185 GLU n 1 186 MET n 1 187 ALA n 1 188 HIS n 1 189 TYR n 1 190 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'SARTORYA FUMIGATA' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'ASPERGILLUS FUMIGATUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 5085 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3) PLYS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PGEX-6P1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q4WCU5_ASPFU _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q4WCU5 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2VEZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 190 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q4WCU5 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 190 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 190 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACO non-polymer . 'ACETYL COENZYME *A' ? 'C23 H38 N7 O17 P3 S' 809.571 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G6P 'D-saccharide, alpha linking' n 6-O-phosphono-alpha-D-glucopyranose ? 'C6 H13 O9 P' 260.136 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2VEZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.10 _exptl_crystal.density_percent_sol 46.79 _exptl_crystal.description NONE # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM14' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM14 _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2VEZ _reflns.observed_criterion_sigma_I . _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.00 _reflns.d_resolution_high 1.45 _reflns.number_obs 33822 _reflns.number_all ? _reflns.percent_possible_obs 94.2 _reflns.pdbx_Rmerge_I_obs 0.07 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.20 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.1 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.45 _reflns_shell.d_res_low 1.50 _reflns_shell.percent_possible_all 86.4 _reflns_shell.Rmerge_I_obs 0.46 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.30 _reflns_shell.pdbx_redundancy 3.0 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2VEZ _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 32695 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 1.45 _refine.ls_percent_reflns_obs 94.7 _refine.ls_R_factor_obs 0.169 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.168 _refine.ls_R_factor_R_free 0.219 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 1.500 _refine.ls_number_reflns_R_free 508 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.969 _refine.correlation_coeff_Fo_to_Fc_free 0.946 _refine.B_iso_mean 19.39 _refine.aniso_B[1][1] 0.40000 _refine.aniso_B[2][2] -0.75000 _refine.aniso_B[3][3] 0.36000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. RESIDUES 1-25 ARE DISORDERED.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.077 _refine.pdbx_overall_ESU_R_Free 0.073 _refine.overall_SU_ML 0.044 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.447 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1314 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 72 _refine_hist.number_atoms_solvent 204 _refine_hist.number_atoms_total 1590 _refine_hist.d_res_high 1.45 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.022 ? 1500 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.707 2.034 ? 2064 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 15.296 5.000 ? 191 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 29.632 23.529 ? 68 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.740 15.000 ? 259 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.373 15.000 ? 12 'X-RAY DIFFRACTION' ? r_chiral_restr 0.143 0.200 ? 231 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 1121 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.219 0.200 ? 678 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.319 0.200 ? 1027 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.134 0.200 ? 153 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.239 0.200 ? 100 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.173 0.200 ? 51 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.232 1.500 ? 879 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.883 2.000 ? 1410 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.598 3.000 ? 703 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.777 4.500 ? 639 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.45 _refine_ls_shell.d_res_low 1.49 _refine_ls_shell.number_reflns_R_work 2229 _refine_ls_shell.R_factor_R_work 0.2010 _refine_ls_shell.percent_reflns_obs 88.85 _refine_ls_shell.R_factor_R_free 0.2120 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 42 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2VEZ _struct.title 'AfGNA1 crystal structure complexed with Acetyl-CoA and Glucose-6P gives new insights into catalysis' _struct.pdbx_descriptor 'PUTATIVE GLUCOSAMINE 6-PHOSPHATE ACETYLTRANSFERASE (E.C.2.3.1.4)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2VEZ _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'TRANSFERASE, ACYLTRANSFERASE, GLUCOSAMINE-6-PHOSPHATE N-ACETYLTRANSFERASE (GNA1) UDP-GLCNAC BIOSYNTHETIC PATHWAY' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 32 ? ILE A 36 ? SER A 32 ILE A 36 5 ? 5 HELX_P HELX_P2 2 SER A 37 ? LEU A 44 ? SER A 37 LEU A 44 1 ? 8 HELX_P HELX_P3 3 CYS A 54 ? ARG A 60 ? CYS A 54 ARG A 60 5 ? 7 HELX_P HELX_P4 4 GLY A 61 ? ARG A 67 ? GLY A 61 ARG A 67 1 ? 7 HELX_P HELX_P5 5 ASN A 76 ? ALA A 89 ? ASN A 76 ALA A 89 1 ? 14 HELX_P HELX_P6 6 PHE A 118 ? GLY A 123 ? PHE A 118 GLY A 123 1 ? 6 HELX_P HELX_P7 7 LYS A 135 ? GLN A 138 ? LYS A 135 GLN A 138 5 ? 4 HELX_P HELX_P8 8 LYS A 141 ? GLY A 158 ? LYS A 141 GLY A 158 1 ? 18 HELX_P HELX_P9 9 SER A 167 ? ALA A 169 ? SER A 167 ALA A 169 5 ? 3 HELX_P HELX_P10 10 ASN A 170 ? CYS A 177 ? ASN A 170 CYS A 177 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 THR A 49 ? PRO A 52 ? THR A 49 PRO A 52 AA 2 TYR A 94 ? CYS A 100 ? TYR A 94 CYS A 100 AA 3 ILE A 106 ? ARG A 116 ? ILE A 106 ARG A 116 AA 4 MET A 124 ? VAL A 133 ? MET A 124 VAL A 133 AA 5 LYS A 161 ? ILE A 163 ? LYS A 161 ILE A 163 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ARG A 51 ? N ARG A 51 O VAL A 98 ? O VAL A 98 AA 2 3 O VAL A 99 ? O VAL A 99 N VAL A 107 ? N VAL A 107 AA 3 4 N GLU A 115 ? N GLU A 115 O VAL A 125 ? O VAL A 125 AA 4 5 N GLY A 126 ? N GLY A 126 O LYS A 161 ? O LYS A 161 # _database_PDB_matrix.entry_id 2VEZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2VEZ _atom_sites.fract_transf_matrix[1][1] 0.014149 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009946 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018182 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _database_PDB_caveat.text 'G6P A 202 HAS WRONG CHIRALITY AT ATOM C1' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 THR 2 2 ? ? ? A . n A 1 3 ASN 3 3 ? ? ? A . n A 1 4 ALA 4 4 ? ? ? A . n A 1 5 THR 5 5 ? ? ? A . n A 1 6 ILE 6 6 ? ? ? A . n A 1 7 ALA 7 7 ? ? ? A . n A 1 8 PRO 8 8 ? ? ? A . n A 1 9 THR 9 9 ? ? ? A . n A 1 10 THR 10 10 ? ? ? A . n A 1 11 THR 11 11 ? ? ? A . n A 1 12 ALA 12 12 ? ? ? A . n A 1 13 ALA 13 13 ? ? ? A . n A 1 14 PRO 14 14 ? ? ? A . n A 1 15 VAL 15 15 ? ? ? A . n A 1 16 THR 16 16 ? ? ? A . n A 1 17 LYS 17 17 ? ? ? A . n A 1 18 SER 18 18 ? ? ? A . n A 1 19 VAL 19 19 ? ? ? A . n A 1 20 ASP 20 20 ? ? ? A . n A 1 21 ALA 21 21 ? ? ? A . n A 1 22 PRO 22 22 ? ? ? A . n A 1 23 THR 23 23 ? ? ? A . n A 1 24 ALA 24 24 ? ? ? A . n A 1 25 ASP 25 25 ? ? ? A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 PRO 29 29 29 PRO PRO A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 PHE 31 31 31 PHE PHE A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 PRO 33 33 33 PRO PRO A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 ILE 36 36 36 ILE ILE A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 PRO 38 38 38 PRO PRO A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 TYR 48 48 48 TYR TYR A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 ARG 51 51 51 ARG ARG A . n A 1 52 PRO 52 52 52 PRO PRO A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 CYS 54 54 54 CYS CYS A . n A 1 55 ARG 55 55 55 ARG ARG A . n A 1 56 SER 56 56 56 SER SER A . n A 1 57 ASP 57 57 57 ASP ASP A . n A 1 58 TYR 58 58 58 TYR TYR A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 ARG 60 60 60 ARG ARG A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 TYR 62 62 62 TYR TYR A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 ASP 64 64 64 ASP ASP A . n A 1 65 VAL 65 65 65 VAL VAL A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 ARG 67 67 67 ARG ARG A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 THR 70 70 70 THR THR A . n A 1 71 THR 71 71 71 THR THR A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 ASP 74 74 74 ASP ASP A . n A 1 75 ILE 75 75 75 ILE ILE A . n A 1 76 ASN 76 76 76 ASN ASN A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 GLN 79 79 79 GLN GLN A . n A 1 80 TRP 80 80 80 TRP TRP A . n A 1 81 ASN 81 81 81 ASN ASN A . n A 1 82 SER 82 82 82 SER SER A . n A 1 83 ARG 83 83 83 ARG ARG A . n A 1 84 TYR 84 84 84 TYR TYR A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 TRP 86 86 86 TRP TRP A . n A 1 87 ILE 87 87 87 ILE ILE A . n A 1 88 ARG 88 88 88 ARG ARG A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 ARG 90 90 90 ARG ARG A . n A 1 91 SER 91 91 91 SER SER A . n A 1 92 ASP 92 92 92 ASP ASP A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 TYR 94 94 94 TYR TYR A . n A 1 95 TYR 95 95 95 TYR TYR A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 VAL 98 98 98 VAL VAL A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 CYS 100 100 100 CYS CYS A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 GLU 103 103 103 GLU GLU A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 ARG 105 105 105 ARG ARG A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 VAL 107 107 107 VAL VAL A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 THR 109 109 109 THR THR A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 VAL 113 113 113 VAL VAL A . n A 1 114 VAL 114 114 114 VAL VAL A . n A 1 115 GLU 115 115 115 GLU GLU A . n A 1 116 ARG 116 116 116 ARG ARG A . n A 1 117 LYS 117 117 117 LYS LYS A . n A 1 118 PHE 118 118 118 PHE PHE A . n A 1 119 ILE 119 119 119 ILE ILE A . n A 1 120 HIS 120 120 120 HIS HIS A . n A 1 121 SER 121 121 121 SER SER A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 GLY 123 123 123 GLY GLY A . n A 1 124 MET 124 124 124 MET MET A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 GLY 126 126 126 GLY GLY A . n A 1 127 HIS 127 127 127 HIS HIS A . n A 1 128 ILE 128 128 128 ILE ILE A . n A 1 129 GLU 129 129 129 GLU GLU A . n A 1 130 ASP 130 130 130 ASP ASP A . n A 1 131 ILE 131 131 131 ILE ILE A . n A 1 132 ALA 132 132 132 ALA ALA A . n A 1 133 VAL 133 133 133 VAL VAL A . n A 1 134 GLU 134 134 134 GLU GLU A . n A 1 135 LYS 135 135 135 LYS LYS A . n A 1 136 GLY 136 136 136 GLY GLY A . n A 1 137 GLN 137 137 137 GLN GLN A . n A 1 138 GLN 138 138 138 GLN GLN A . n A 1 139 GLY 139 139 139 GLY GLY A . n A 1 140 LYS 140 140 140 LYS LYS A . n A 1 141 LYS 141 141 141 LYS LYS A . n A 1 142 LEU 142 142 142 LEU LEU A . n A 1 143 GLY 143 143 143 GLY GLY A . n A 1 144 LEU 144 144 144 LEU LEU A . n A 1 145 ARG 145 145 145 ARG ARG A . n A 1 146 ILE 146 146 146 ILE ILE A . n A 1 147 ILE 147 147 147 ILE ILE A . n A 1 148 GLN 148 148 148 GLN GLN A . n A 1 149 ALA 149 149 149 ALA ALA A . n A 1 150 LEU 150 150 150 LEU LEU A . n A 1 151 ASP 151 151 151 ASP ASP A . n A 1 152 TYR 152 152 152 TYR TYR A . n A 1 153 VAL 153 153 153 VAL VAL A . n A 1 154 ALA 154 154 154 ALA ALA A . n A 1 155 GLU 155 155 155 GLU GLU A . n A 1 156 LYS 156 156 156 LYS LYS A . n A 1 157 VAL 157 157 157 VAL VAL A . n A 1 158 GLY 158 158 158 GLY GLY A . n A 1 159 CYS 159 159 159 CYS CYS A . n A 1 160 TYR 160 160 160 TYR TYR A . n A 1 161 LYS 161 161 161 LYS LYS A . n A 1 162 THR 162 162 162 THR THR A . n A 1 163 ILE 163 163 163 ILE ILE A . n A 1 164 LEU 164 164 164 LEU LEU A . n A 1 165 ASP 165 165 165 ASP ASP A . n A 1 166 CYS 166 166 166 CYS CYS A . n A 1 167 SER 167 167 167 SER SER A . n A 1 168 GLU 168 168 168 GLU GLU A . n A 1 169 ALA 169 169 169 ALA ALA A . n A 1 170 ASN 170 170 170 ASN ASN A . n A 1 171 GLU 171 171 171 GLU GLU A . n A 1 172 GLY 172 172 172 GLY GLY A . n A 1 173 PHE 173 173 173 PHE PHE A . n A 1 174 TYR 174 174 174 TYR TYR A . n A 1 175 ILE 175 175 175 ILE ILE A . n A 1 176 LYS 176 176 176 LYS LYS A . n A 1 177 CYS 177 177 177 CYS CYS A . n A 1 178 GLY 178 178 178 GLY GLY A . n A 1 179 PHE 179 179 179 PHE PHE A . n A 1 180 LYS 180 180 180 LYS LYS A . n A 1 181 ARG 181 181 181 ARG ARG A . n A 1 182 ALA 182 182 182 ALA ALA A . n A 1 183 GLY 183 183 183 GLY GLY A . n A 1 184 LEU 184 184 184 LEU LEU A . n A 1 185 GLU 185 185 185 GLU GLU A . n A 1 186 MET 186 186 186 MET MET A . n A 1 187 ALA 187 187 187 ALA ALA A . n A 1 188 HIS 188 188 188 HIS HIS A . n A 1 189 TYR 189 189 189 TYR TYR A . n A 1 190 TYR 190 190 190 TYR TYR A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACO 1 201 1191 ACO ACO A . C 3 G6P 1 202 1192 G6P G6P A . D 4 PO4 1 203 1193 PO4 PO4 A . E 5 HOH 1 301 2059 HOH HOH A . E 5 HOH 2 302 2034 HOH HOH A . E 5 HOH 3 303 2104 HOH HOH A . E 5 HOH 4 304 2035 HOH HOH A . E 5 HOH 5 305 2197 HOH HOH A . E 5 HOH 6 306 2122 HOH HOH A . E 5 HOH 7 307 2168 HOH HOH A . E 5 HOH 8 308 2051 HOH HOH A . E 5 HOH 9 309 2060 HOH HOH A . E 5 HOH 10 310 2140 HOH HOH A . E 5 HOH 11 311 2125 HOH HOH A . E 5 HOH 12 312 2099 HOH HOH A . E 5 HOH 13 313 2068 HOH HOH A . E 5 HOH 14 314 2030 HOH HOH A . E 5 HOH 15 315 2133 HOH HOH A . E 5 HOH 16 316 2039 HOH HOH A . E 5 HOH 17 317 2177 HOH HOH A . E 5 HOH 18 318 2023 HOH HOH A . E 5 HOH 19 319 2193 HOH HOH A . E 5 HOH 20 320 2056 HOH HOH A . E 5 HOH 21 321 2195 HOH HOH A . E 5 HOH 22 322 2162 HOH HOH A . E 5 HOH 23 323 2106 HOH HOH A . E 5 HOH 24 324 2128 HOH HOH A . E 5 HOH 25 325 2189 HOH HOH A . E 5 HOH 26 326 2036 HOH HOH A . E 5 HOH 27 327 2165 HOH HOH A . E 5 HOH 28 328 2089 HOH HOH A . E 5 HOH 29 329 2105 HOH HOH A . E 5 HOH 30 330 2136 HOH HOH A . E 5 HOH 31 331 2004 HOH HOH A . E 5 HOH 32 332 2070 HOH HOH A . E 5 HOH 33 333 2054 HOH HOH A . E 5 HOH 34 334 2114 HOH HOH A . E 5 HOH 35 335 2014 HOH HOH A . E 5 HOH 36 336 2123 HOH HOH A . E 5 HOH 37 337 2115 HOH HOH A . E 5 HOH 38 338 2130 HOH HOH A . E 5 HOH 39 339 2173 HOH HOH A . E 5 HOH 40 340 2026 HOH HOH A . E 5 HOH 41 341 2196 HOH HOH A . E 5 HOH 42 342 2147 HOH HOH A . E 5 HOH 43 343 2185 HOH HOH A . E 5 HOH 44 344 2151 HOH HOH A . E 5 HOH 45 345 2003 HOH HOH A . E 5 HOH 46 346 2011 HOH HOH A . E 5 HOH 47 347 2180 HOH HOH A . E 5 HOH 48 348 2135 HOH HOH A . E 5 HOH 49 349 2093 HOH HOH A . E 5 HOH 50 350 2113 HOH HOH A . E 5 HOH 51 351 2164 HOH HOH A . E 5 HOH 52 352 2021 HOH HOH A . E 5 HOH 53 353 2041 HOH HOH A . E 5 HOH 54 354 2182 HOH HOH A . E 5 HOH 55 355 2148 HOH HOH A . E 5 HOH 56 356 2161 HOH HOH A . E 5 HOH 57 357 2005 HOH HOH A . E 5 HOH 58 358 2084 HOH HOH A . E 5 HOH 59 359 2098 HOH HOH A . E 5 HOH 60 360 2048 HOH HOH A . E 5 HOH 61 361 2152 HOH HOH A . E 5 HOH 62 362 2174 HOH HOH A . E 5 HOH 63 363 2170 HOH HOH A . E 5 HOH 64 364 2138 HOH HOH A . E 5 HOH 65 365 2007 HOH HOH A . E 5 HOH 66 366 2176 HOH HOH A . E 5 HOH 67 367 2049 HOH HOH A . E 5 HOH 68 368 2149 HOH HOH A . E 5 HOH 69 369 2091 HOH HOH A . E 5 HOH 70 370 2111 HOH HOH A . E 5 HOH 71 371 2077 HOH HOH A . E 5 HOH 72 372 2110 HOH HOH A . E 5 HOH 73 373 2083 HOH HOH A . E 5 HOH 74 374 2156 HOH HOH A . E 5 HOH 75 375 2040 HOH HOH A . E 5 HOH 76 376 2198 HOH HOH A . E 5 HOH 77 377 2159 HOH HOH A . E 5 HOH 78 378 2013 HOH HOH A . E 5 HOH 79 379 2190 HOH HOH A . E 5 HOH 80 380 2134 HOH HOH A . E 5 HOH 81 381 2158 HOH HOH A . E 5 HOH 82 382 2076 HOH HOH A . E 5 HOH 83 383 2175 HOH HOH A . E 5 HOH 84 384 2116 HOH HOH A . E 5 HOH 85 385 2191 HOH HOH A . E 5 HOH 86 386 2126 HOH HOH A . E 5 HOH 87 387 2154 HOH HOH A . E 5 HOH 88 388 2192 HOH HOH A . E 5 HOH 89 389 2127 HOH HOH A . E 5 HOH 90 390 2087 HOH HOH A . E 5 HOH 91 391 2004 HOH HOH A . E 5 HOH 92 392 2142 HOH HOH A . E 5 HOH 93 393 2053 HOH HOH A . E 5 HOH 94 394 2169 HOH HOH A . E 5 HOH 95 395 2183 HOH HOH A . E 5 HOH 96 396 2017 HOH HOH A . E 5 HOH 97 397 2025 HOH HOH A . E 5 HOH 98 398 2163 HOH HOH A . E 5 HOH 99 399 2008 HOH HOH A . E 5 HOH 100 400 2107 HOH HOH A . E 5 HOH 101 401 2144 HOH HOH A . E 5 HOH 102 402 2046 HOH HOH A . E 5 HOH 103 403 2031 HOH HOH A . E 5 HOH 104 404 2020 HOH HOH A . E 5 HOH 105 405 2009 HOH HOH A . E 5 HOH 106 406 2003 HOH HOH A . E 5 HOH 107 407 2157 HOH HOH A . E 5 HOH 108 408 2155 HOH HOH A . E 5 HOH 109 409 2015 HOH HOH A . E 5 HOH 110 410 2108 HOH HOH A . E 5 HOH 111 411 2172 HOH HOH A . E 5 HOH 112 412 2002 HOH HOH A . E 5 HOH 113 413 2064 HOH HOH A . E 5 HOH 114 414 2117 HOH HOH A . E 5 HOH 115 415 2061 HOH HOH A . E 5 HOH 116 416 2153 HOH HOH A . E 5 HOH 117 417 2055 HOH HOH A . E 5 HOH 118 418 2102 HOH HOH A . E 5 HOH 119 419 2187 HOH HOH A . E 5 HOH 120 420 2109 HOH HOH A . E 5 HOH 121 421 2119 HOH HOH A . E 5 HOH 122 422 2145 HOH HOH A . E 5 HOH 123 423 2088 HOH HOH A . E 5 HOH 124 424 2112 HOH HOH A . E 5 HOH 125 425 2094 HOH HOH A . E 5 HOH 126 426 2103 HOH HOH A . E 5 HOH 127 427 2131 HOH HOH A . E 5 HOH 128 428 2171 HOH HOH A . E 5 HOH 129 429 2092 HOH HOH A . E 5 HOH 130 430 2179 HOH HOH A . E 5 HOH 131 431 2043 HOH HOH A . E 5 HOH 132 432 2058 HOH HOH A . E 5 HOH 133 433 2166 HOH HOH A . E 5 HOH 134 434 2167 HOH HOH A . E 5 HOH 135 435 2073 HOH HOH A . E 5 HOH 136 436 2146 HOH HOH A . E 5 HOH 137 437 2143 HOH HOH A . E 5 HOH 138 438 2188 HOH HOH A . E 5 HOH 139 439 2121 HOH HOH A . E 5 HOH 140 440 2001 HOH HOH A . E 5 HOH 141 441 2137 HOH HOH A . E 5 HOH 142 442 2078 HOH HOH A . E 5 HOH 143 443 2042 HOH HOH A . E 5 HOH 144 444 2050 HOH HOH A . E 5 HOH 145 445 2118 HOH HOH A . E 5 HOH 146 446 2057 HOH HOH A . E 5 HOH 147 447 2006 HOH HOH A . E 5 HOH 148 448 2002 HOH HOH A . E 5 HOH 149 449 2067 HOH HOH A . E 5 HOH 150 450 2194 HOH HOH A . E 5 HOH 151 451 2139 HOH HOH A . E 5 HOH 152 452 2186 HOH HOH A . E 5 HOH 153 453 2069 HOH HOH A . E 5 HOH 154 454 2129 HOH HOH A . E 5 HOH 155 455 2181 HOH HOH A . E 5 HOH 156 456 2052 HOH HOH A . E 5 HOH 157 457 2150 HOH HOH A . E 5 HOH 158 458 2141 HOH HOH A . E 5 HOH 159 459 2010 HOH HOH A . E 5 HOH 160 460 2132 HOH HOH A . E 5 HOH 161 461 2178 HOH HOH A . E 5 HOH 162 462 2120 HOH HOH A . E 5 HOH 163 463 2124 HOH HOH A . E 5 HOH 164 464 2184 HOH HOH A . E 5 HOH 165 465 2097 HOH HOH A . E 5 HOH 166 466 2090 HOH HOH A . E 5 HOH 167 467 2001 HOH HOH A . E 5 HOH 168 468 2063 HOH HOH A . E 5 HOH 169 469 2081 HOH HOH A . E 5 HOH 170 470 2066 HOH HOH A . E 5 HOH 171 471 2082 HOH HOH A . E 5 HOH 172 472 2071 HOH HOH A . E 5 HOH 173 473 2028 HOH HOH A . E 5 HOH 174 474 2012 HOH HOH A . E 5 HOH 175 475 2080 HOH HOH A . E 5 HOH 176 476 2160 HOH HOH A . E 5 HOH 177 477 2096 HOH HOH A . E 5 HOH 178 478 2022 HOH HOH A . E 5 HOH 179 479 2065 HOH HOH A . E 5 HOH 180 480 2085 HOH HOH A . E 5 HOH 181 481 2024 HOH HOH A . E 5 HOH 182 482 2100 HOH HOH A . E 5 HOH 183 483 2075 HOH HOH A . E 5 HOH 184 484 2079 HOH HOH A . E 5 HOH 185 485 2095 HOH HOH A . E 5 HOH 186 486 2029 HOH HOH A . E 5 HOH 187 487 2005 HOH HOH A . E 5 HOH 188 488 2038 HOH HOH A . E 5 HOH 189 489 2018 HOH HOH A . E 5 HOH 190 490 2033 HOH HOH A . E 5 HOH 191 491 2032 HOH HOH A . E 5 HOH 192 492 2045 HOH HOH A . E 5 HOH 193 493 2062 HOH HOH A . E 5 HOH 194 494 2037 HOH HOH A . E 5 HOH 195 495 2016 HOH HOH A . E 5 HOH 196 496 2074 HOH HOH A . E 5 HOH 197 497 2086 HOH HOH A . E 5 HOH 198 498 2027 HOH HOH A . E 5 HOH 199 499 2072 HOH HOH A . E 5 HOH 200 500 2019 HOH HOH A . E 5 HOH 201 501 2101 HOH HOH A . E 5 HOH 202 502 2047 HOH HOH A . E 5 HOH 203 503 2044 HOH HOH A . E 5 HOH 204 504 2006 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6620 ? 1 MORE -35.8 ? 1 'SSA (A^2)' 17260 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 70.6770000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 27.5000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-03-10 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-07-12 5 'Structure model' 1 4 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Derived calculations' 6 5 'Structure model' Other 7 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_PDB_caveat 2 5 'Structure model' chem_comp 3 5 'Structure model' entity 4 5 'Structure model' pdbx_chem_comp_identifier 5 5 'Structure model' pdbx_database_status 6 5 'Structure model' pdbx_entity_nonpoly 7 5 'Structure model' struct_site 8 5 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_chem_comp.mon_nstd_flag' 2 5 'Structure model' '_chem_comp.name' 3 5 'Structure model' '_chem_comp.type' 4 5 'Structure model' '_entity.pdbx_description' 5 5 'Structure model' '_pdbx_database_status.status_code_sf' 6 5 'Structure model' '_pdbx_entity_nonpoly.name' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 MOLREP phasing . ? 4 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 88 ? ? CZ A ARG 88 ? ? NH1 A ARG 88 ? ? 124.15 120.30 3.85 0.50 N 2 1 NE A ARG 88 ? ? CZ A ARG 88 ? ? NH2 A ARG 88 ? ? 115.16 120.30 -5.14 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 45 ? ? -49.27 151.38 2 1 ASP A 47 ? ? 74.26 -10.13 3 1 THR A 70 ? ? -173.74 -176.81 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 GLY _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 102 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 GLU _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 103 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 141.03 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id C1 _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id G6P _pdbx_validate_chiral.auth_seq_id 202 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details 'WRONG HAND' _pdbx_validate_chiral.omega . # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 503 ? 6.11 . 2 1 O ? A HOH 504 ? . 6.69 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A THR 2 ? A THR 2 3 1 Y 1 A ASN 3 ? A ASN 3 4 1 Y 1 A ALA 4 ? A ALA 4 5 1 Y 1 A THR 5 ? A THR 5 6 1 Y 1 A ILE 6 ? A ILE 6 7 1 Y 1 A ALA 7 ? A ALA 7 8 1 Y 1 A PRO 8 ? A PRO 8 9 1 Y 1 A THR 9 ? A THR 9 10 1 Y 1 A THR 10 ? A THR 10 11 1 Y 1 A THR 11 ? A THR 11 12 1 Y 1 A ALA 12 ? A ALA 12 13 1 Y 1 A ALA 13 ? A ALA 13 14 1 Y 1 A PRO 14 ? A PRO 14 15 1 Y 1 A VAL 15 ? A VAL 15 16 1 Y 1 A THR 16 ? A THR 16 17 1 Y 1 A LYS 17 ? A LYS 17 18 1 Y 1 A SER 18 ? A SER 18 19 1 Y 1 A VAL 19 ? A VAL 19 20 1 Y 1 A ASP 20 ? A ASP 20 21 1 Y 1 A ALA 21 ? A ALA 21 22 1 Y 1 A PRO 22 ? A PRO 22 23 1 Y 1 A THR 23 ? A THR 23 24 1 Y 1 A ALA 24 ? A ALA 24 25 1 Y 1 A ASP 25 ? A ASP 25 # _pdbx_chem_comp_identifier.comp_id G6P _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1.0 _pdbx_chem_comp_identifier.identifier a-D-Glcp6PO3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETYL COENZYME *A' ACO 3 6-O-phosphono-alpha-D-glucopyranose G6P 4 'PHOSPHATE ION' PO4 5 water HOH #