HEADER ISOMERASE 04-NOV-07 2VFI TITLE CRYSTAL STRUCTURE OF THE PLASMODIUM FALCIPARUM TRIOSEPHOSPHATE TITLE 2 ISOMERASE IN THE LOOP CLOSED STATE WITH 3-PHOSPHOGLYCERATE BOUND AT TITLE 3 THE ACTIVE SITE AND INTERFACE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TIM, TRIOSE-PHOSPHATE ISOMERASE; COMPND 5 EC: 5.3.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_COMMON: MALARIAL PARASITE; SOURCE 4 ORGANISM_TAXID: 5833; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: AA200; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PTRC99A; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PARC1008 KEYWDS PLASMODIUM FALCIPARUM, FATTY ACID BIOSYNTHESIS, TRIOSEPHOSPHATE KEYWDS 2 ISOMERASE, TIM, MUTANT, ISOMERASE, GLYCOLYSIS, LOOP CLOSED, PENTOSE KEYWDS 3 SHUNT, GLUCONEOGENESIS, LIPID SYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR P.GAYATHRI,M.BANERJEE,A.VIJAYALAKSHMI,H.BALARAM,P.BALARAM, AUTHOR 2 M.R.N.MURTHY REVDAT 3 13-DEC-23 2VFI 1 REMARK REVDAT 2 04-AUG-09 2VFI 1 JRNL REVDAT 1 09-DEC-08 2VFI 0 JRNL AUTH P.GAYATHRI,M.BANERJEE,A.VIJAYALAKSHMI,H.BALARAM,P.BALARAM, JRNL AUTH 2 M.R.N.MURTHY JRNL TITL BIOCHEMICAL AND STRUCTURAL CHARACTERIZATION OF RESIDUE 96 JRNL TITL 2 MUTANTS OF PLASMODIUM FALCIPARUM TRIOSEPHOSPHATE ISOMERASE: JRNL TITL 3 ACTIVE-SITE LOOP CONFORMATION, HYDRATION AND IDENTIFICATION JRNL TITL 4 OF A DIMER-INTERFACE LIGAND-BINDING SITE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 65 847 2009 JRNL REFN ISSN 0907-4449 JRNL PMID 19622869 JRNL DOI 10.1107/S0907444909018666 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 91.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 21429 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1155 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1289 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3907 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 353 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.38000 REMARK 3 B22 (A**2) : -0.32000 REMARK 3 B33 (A**2) : 0.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.15000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.493 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.272 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.202 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.143 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.880 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4017 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5427 ; 0.968 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 492 ; 4.949 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 195 ;38.390 ;25.590 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 730 ;14.937 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.476 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 615 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2994 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2068 ; 0.155 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2766 ; 0.292 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 328 ; 0.107 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 40 ; 0.113 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.076 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2531 ; 0.190 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3961 ; 0.340 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1671 ; 0.357 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1465 ; 0.592 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VFI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1290034320. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22598 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.82 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1O5X REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 4.0-5.5 PEG REMARK 280 1450 8-24%, PH 5.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.56750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ALA 163 TO VAL REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ALA 163 TO VAL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 138 CD CE NZ REMARK 470 LYS B 199 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 12 -145.60 53.71 REMARK 500 LYS B 12 -136.45 53.89 REMARK 500 LYS B 174 58.49 -93.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "AA" REMARK 700 AND "BA" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 8- REMARK 700 STRANDED BARREL THIS IS REPRESENTED BY A 9-STRANDED SHEET IN REMARK 700 WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3PG A 1249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3PG A 1250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3PG B 1249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3PG B 1250 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LZO RELATED DB: PDB REMARK 900 PLASMODIUM FALCIPARUM TRIOSEPHOSPHATE ISOMERASE- PHOSPHOGLYCOLATE REMARK 900 COMPLEX REMARK 900 RELATED ID: 1M7P RELATED DB: PDB REMARK 900 PLASMODIUM FALCIPARUM TRIOSEPHOSPHATE ISOMERASE ( PFTIM)COMPLED TO REMARK 900 SUBSTRATE ANALOG GLYCEROL-3 -PHOSPHATE (G3P). REMARK 900 RELATED ID: 1WOA RELATED DB: PDB REMARK 900 STRUCTURE OF THE LOOP6 HINGE MUTANT OF PLASMODIUMFALCIPARUM REMARK 900 TRIOSEPHOSPHATE ISOMERASE, W168F, COMPLEXEDWITH GLYCEROL-2-PHOSPHATE REMARK 900 RELATED ID: 1WOB RELATED DB: PDB REMARK 900 STRUCTURE OF A LOOP6 HINGE MUTANT OF PLASMODIUM REMARK 900 FALCIPARUMTRIOSEPHOSPHATE ISOMERASE, W168F, COMPLEXED TO SULFATE REMARK 900 RELATED ID: 1LYX RELATED DB: PDB REMARK 900 PLASMODIUM FALCIPARUM TRIOSEPHOSPHATE ISOMERASE ( PFTIM)- REMARK 900 PHOSPHOGLYCOLATE COMPLEX REMARK 900 RELATED ID: 1M7O RELATED DB: PDB REMARK 900 PLASMODIUM FALCIPARUM TRIOSEPHOSPHATE ISOMERASE ( PFTIM)COMPLED TO REMARK 900 SUBSTRATE ANALOG 3- PHOSPHOGLYCERATE (3PG) REMARK 900 RELATED ID: 1O5X RELATED DB: PDB REMARK 900 PLASMODIUM FALCIPARUM TIM COMPLEXED TO 2- PHOSPHOGLYCERATE REMARK 900 RELATED ID: 1VGA RELATED DB: PDB REMARK 900 STRUCTURES OF UNLIGATED AND INHIBITOR COMPLEXES OF W168FMUTANT OF REMARK 900 TRIOSEPHOSPHATE ISOMERASE FROM PLASMODIUMFALCIPARUM REMARK 900 RELATED ID: 1YDV RELATED DB: PDB REMARK 900 TRIOSEPHOSPHATE ISOMERASE (TIM) REMARK 900 RELATED ID: 2VFD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE F96S MUTANT OF PLASMODIUM FALCIPARUM REMARK 900 TRIOSEPHOSPHATE ISOMERASE REMARK 900 RELATED ID: 2VFE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF F96S MUTANT OF PLASMODIUM FALCIPARUM WITH 3- REMARK 900 PHOSPHOGLYCERATE BOUND AT THE DIMER INTERFACE REMARK 900 RELATED ID: 2VFF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE F96H MUTANT OF PLASMODIUM FALCIPARUM REMARK 900 TRIOSEPHOSPHATE ISOMERASE REMARK 900 RELATED ID: 2VFG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE F96H MUTANT OF PLASMODIUM FALCIPARUM REMARK 900 TRIOSEPHOSPHATE ISOMERASE WITH 3-PHOSPHOGLYCERATE BOUND AT THE REMARK 900 DIMER INTERFACE REMARK 900 RELATED ID: 2VFH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE F96W MUTANT OF PLASMODIUM FALCIPARUM REMARK 900 TRIOSEPHOSPHATE ISOMERASE COMPLEXED WITH 3-PHOSPHOGLYCERATE DBREF 2VFI A 1 248 UNP Q07412 TPIS_PLAFA 1 248 DBREF 2VFI B 1 248 UNP Q07412 TPIS_PLAFA 1 248 SEQADV 2VFI VAL A 163 UNP Q07412 ALA 163 ENGINEERED MUTATION SEQADV 2VFI VAL B 163 UNP Q07412 ALA 163 ENGINEERED MUTATION SEQRES 1 A 248 MET ALA ARG LYS TYR PHE VAL ALA ALA ASN TRP LYS CYS SEQRES 2 A 248 ASN GLY THR LEU GLU SER ILE LYS SER LEU THR ASN SER SEQRES 3 A 248 PHE ASN ASN LEU ASP PHE ASP PRO SER LYS LEU ASP VAL SEQRES 4 A 248 VAL VAL PHE PRO VAL SER VAL HIS TYR ASP HIS THR ARG SEQRES 5 A 248 LYS LEU LEU GLN SER LYS PHE SER THR GLY ILE GLN ASN SEQRES 6 A 248 VAL SER LYS PHE GLY ASN GLY SER TYR THR GLY GLU VAL SEQRES 7 A 248 SER ALA GLU ILE ALA LYS ASP LEU ASN ILE GLU TYR VAL SEQRES 8 A 248 ILE ILE GLY HIS PHE GLU ARG ARG LYS TYR PHE HIS GLU SEQRES 9 A 248 THR ASP GLU ASP VAL ARG GLU LYS LEU GLN ALA SER LEU SEQRES 10 A 248 LYS ASN ASN LEU LYS ALA VAL VAL CYS PHE GLY GLU SER SEQRES 11 A 248 LEU GLU GLN ARG GLU GLN ASN LYS THR ILE GLU VAL ILE SEQRES 12 A 248 THR LYS GLN VAL LYS ALA PHE VAL ASP LEU ILE ASP ASN SEQRES 13 A 248 PHE ASP ASN VAL ILE LEU VAL TYR GLU PRO LEU TRP ALA SEQRES 14 A 248 ILE GLY THR GLY LYS THR ALA THR PRO GLU GLN ALA GLN SEQRES 15 A 248 LEU VAL HIS LYS GLU ILE ARG LYS ILE VAL LYS ASP THR SEQRES 16 A 248 CYS GLY GLU LYS GLN ALA ASN GLN ILE ARG ILE LEU TYR SEQRES 17 A 248 GLY GLY SER VAL ASN THR GLU ASN CYS SER SER LEU ILE SEQRES 18 A 248 GLN GLN GLU ASP ILE ASP GLY PHE LEU VAL GLY ASN ALA SEQRES 19 A 248 SER LEU LYS GLU SER PHE VAL ASP ILE ILE LYS SER ALA SEQRES 20 A 248 MET SEQRES 1 B 248 MET ALA ARG LYS TYR PHE VAL ALA ALA ASN TRP LYS CYS SEQRES 2 B 248 ASN GLY THR LEU GLU SER ILE LYS SER LEU THR ASN SER SEQRES 3 B 248 PHE ASN ASN LEU ASP PHE ASP PRO SER LYS LEU ASP VAL SEQRES 4 B 248 VAL VAL PHE PRO VAL SER VAL HIS TYR ASP HIS THR ARG SEQRES 5 B 248 LYS LEU LEU GLN SER LYS PHE SER THR GLY ILE GLN ASN SEQRES 6 B 248 VAL SER LYS PHE GLY ASN GLY SER TYR THR GLY GLU VAL SEQRES 7 B 248 SER ALA GLU ILE ALA LYS ASP LEU ASN ILE GLU TYR VAL SEQRES 8 B 248 ILE ILE GLY HIS PHE GLU ARG ARG LYS TYR PHE HIS GLU SEQRES 9 B 248 THR ASP GLU ASP VAL ARG GLU LYS LEU GLN ALA SER LEU SEQRES 10 B 248 LYS ASN ASN LEU LYS ALA VAL VAL CYS PHE GLY GLU SER SEQRES 11 B 248 LEU GLU GLN ARG GLU GLN ASN LYS THR ILE GLU VAL ILE SEQRES 12 B 248 THR LYS GLN VAL LYS ALA PHE VAL ASP LEU ILE ASP ASN SEQRES 13 B 248 PHE ASP ASN VAL ILE LEU VAL TYR GLU PRO LEU TRP ALA SEQRES 14 B 248 ILE GLY THR GLY LYS THR ALA THR PRO GLU GLN ALA GLN SEQRES 15 B 248 LEU VAL HIS LYS GLU ILE ARG LYS ILE VAL LYS ASP THR SEQRES 16 B 248 CYS GLY GLU LYS GLN ALA ASN GLN ILE ARG ILE LEU TYR SEQRES 17 B 248 GLY GLY SER VAL ASN THR GLU ASN CYS SER SER LEU ILE SEQRES 18 B 248 GLN GLN GLU ASP ILE ASP GLY PHE LEU VAL GLY ASN ALA SEQRES 19 B 248 SER LEU LYS GLU SER PHE VAL ASP ILE ILE LYS SER ALA SEQRES 20 B 248 MET HET 3PG A1249 11 HET 3PG A1250 11 HET 3PG B1249 11 HET 3PG B1250 11 HETNAM 3PG 3-PHOSPHOGLYCERIC ACID FORMUL 3 3PG 4(C3 H7 O7 P) FORMUL 7 HOH *353(H2 O) HELIX 1 1 THR A 16 ASN A 29 1 14 HELIX 2 2 VAL A 44 VAL A 46 5 3 HELIX 3 3 HIS A 47 LEU A 55 1 9 HELIX 4 4 SER A 79 LEU A 86 1 8 HELIX 5 5 HIS A 95 PHE A 102 1 8 HELIX 6 6 THR A 105 ASN A 119 1 15 HELIX 7 7 SER A 130 GLN A 136 1 7 HELIX 8 8 LYS A 138 ALA A 149 1 12 HELIX 9 9 PHE A 150 ILE A 154 5 5 HELIX 10 10 THR A 177 GLY A 197 1 21 HELIX 11 11 GLY A 197 ILE A 204 1 8 HELIX 12 12 ASN A 216 GLN A 222 1 7 HELIX 13 13 GLY A 232 GLU A 238 5 7 HELIX 14 14 SER A 239 SER A 246 1 8 HELIX 15 15 THR B 16 ASN B 29 1 14 HELIX 16 16 VAL B 44 VAL B 46 5 3 HELIX 17 17 HIS B 47 LEU B 55 1 9 HELIX 18 18 SER B 79 LEU B 86 1 8 HELIX 19 19 HIS B 95 PHE B 102 1 8 HELIX 20 20 THR B 105 ASN B 119 1 15 HELIX 21 21 SER B 130 GLN B 136 1 7 HELIX 22 22 LYS B 138 ALA B 149 1 12 HELIX 23 23 PHE B 150 ILE B 154 5 5 HELIX 24 24 PRO B 166 ILE B 170 5 5 HELIX 25 25 THR B 177 GLY B 197 1 21 HELIX 26 26 GLY B 197 ASN B 202 1 6 HELIX 27 27 ASN B 216 GLN B 222 1 7 HELIX 28 28 GLY B 232 GLU B 238 5 7 HELIX 29 29 SER B 239 SER B 246 1 8 SHEET 1 AA 9 TYR A 5 ASN A 10 0 SHEET 2 AA 9 LEU A 37 PHE A 42 1 O ASP A 38 N VAL A 7 SHEET 3 AA 9 SER A 60 ILE A 63 1 O SER A 60 N VAL A 41 SHEET 4 AA 9 TYR A 90 ILE A 93 1 O TYR A 90 N ILE A 63 SHEET 5 AA 9 LYS A 122 PHE A 127 1 O LYS A 122 N VAL A 91 SHEET 6 AA 9 VAL A 160 TYR A 164 1 O ILE A 161 N VAL A 125 SHEET 7 AA 9 ARG A 205 GLY A 209 1 O ARG A 205 N LEU A 162 SHEET 8 AA 9 GLY A 228 VAL A 231 1 O GLY A 228 N TYR A 208 SHEET 9 AA 9 TYR A 5 ASN A 10 1 O PHE A 6 N PHE A 229 SHEET 1 BA 9 TYR B 5 ASN B 10 0 SHEET 2 BA 9 LEU B 37 PHE B 42 1 O ASP B 38 N VAL B 7 SHEET 3 BA 9 SER B 60 ILE B 63 1 O SER B 60 N VAL B 41 SHEET 4 BA 9 TYR B 90 ILE B 93 1 O TYR B 90 N ILE B 63 SHEET 5 BA 9 LYS B 122 PHE B 127 1 O LYS B 122 N VAL B 91 SHEET 6 BA 9 VAL B 160 TYR B 164 1 O ILE B 161 N VAL B 125 SHEET 7 BA 9 ARG B 205 TYR B 208 1 O ARG B 205 N LEU B 162 SHEET 8 BA 9 GLY B 228 VAL B 231 1 O GLY B 228 N TYR B 208 SHEET 9 BA 9 TYR B 5 ASN B 10 1 O PHE B 6 N PHE B 229 SITE 1 AC1 16 ASN A 10 LYS A 12 HIS A 95 ALA A 169 SITE 2 AC1 16 ILE A 170 GLY A 171 GLY A 209 GLY A 210 SITE 3 AC1 16 SER A 211 LEU A 230 GLY A 232 ASN A 233 SITE 4 AC1 16 HOH A2163 HOH A2164 HOH A2165 HOH A2167 SITE 1 AC2 16 ASN A 65 LYS A 68 ARG A 98 PHE A 102 SITE 2 AC2 16 HIS A 103 GLU A 104 ASP A 108 LYS A 112 SITE 3 AC2 16 HOH A2070 HOH A2168 HOH A2169 HOH A2170 SITE 4 AC2 16 TYR B 101 PHE B 102 HIS B 103 HOH B2182 SITE 1 AC3 13 ASN B 10 LYS B 12 HIS B 95 GLU B 165 SITE 2 AC3 13 ILE B 170 GLY B 171 SER B 211 LEU B 230 SITE 3 AC3 13 GLY B 232 ASN B 233 HOH B2179 HOH B2180 SITE 4 AC3 13 HOH B2181 SITE 1 AC4 16 TYR A 101 PHE A 102 HIS A 103 HOH A2170 SITE 2 AC4 16 ASN B 65 LYS B 68 ARG B 98 PHE B 102 SITE 3 AC4 16 HIS B 103 GLU B 104 ASP B 108 LYS B 112 SITE 4 AC4 16 HOH B2074 HOH B2075 HOH B2096 HOH B2182 CRYST1 53.611 51.135 92.185 90.00 98.24 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018653 0.000000 0.002701 0.00000 SCALE2 0.000000 0.019556 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010961 0.00000 MTRIX1 1 -0.314658 0.307135 -0.898142 36.52651 1 MTRIX2 1 0.280002 -0.874066 -0.396999 5.93095 1 MTRIX3 1 -0.906967 -0.376400 0.189033 29.57784 1