HEADER OXIDOREDUCTASE 05-NOV-07 2VFT TITLE ALDITOL OXIDASE FROM STREPTOMYCES COELICOLOR A3(2): COMPLEX WITH TITLE 2 SORBITOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: XYLITOL OXIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALDITOL OXIDASE; COMPND 5 EC: 1.1.3.41; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES COELICOLOR; SOURCE 3 ORGANISM_TAXID: 100226; SOURCE 4 STRAIN: A3(2); SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TOP10; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBAD/MYC-HISA KEYWDS FAD, SUGAR, POLYOL, FLAVIN, OXIDASE, FLAVOPROTEIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR F.FORNERIS,A.MATTEVI REVDAT 5 13-DEC-23 2VFT 1 HETSYN REVDAT 4 29-JUL-20 2VFT 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 24-FEB-09 2VFT 1 VERSN REVDAT 2 29-JAN-08 2VFT 1 JRNL REVDAT 1 08-JAN-08 2VFT 0 JRNL AUTH F.FORNERIS,D.P.H.M.HEUTS,M.DELVECCHIO,S.ROVIDA,M.W.FRAAIJE, JRNL AUTH 2 A.MATTEVI JRNL TITL STRUCTURAL ANALYSIS OF THE CATALYTIC MECHANISM AND JRNL TITL 2 STEREOSELECTIVITY IN STREPTOMYCES COELICOLOR ALDITOL JRNL TITL 3 OXIDASE. JRNL REF BIOCHEMISTRY V. 47 978 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18154360 JRNL DOI 10.1021/BI701886T REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 51942 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2710 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3764 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 218 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3111 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : 0.91000 REMARK 3 B33 (A**2) : -1.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.11000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.078 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.343 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3274 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4490 ; 1.650 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 418 ; 6.074 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 132 ;31.560 ;22.197 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 460 ;11.893 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;18.291 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 514 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2511 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1473 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2203 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 349 ; 0.159 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 36 ; 0.276 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.263 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2133 ; 1.129 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3319 ; 1.674 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1376 ; 2.500 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1169 ; 3.919 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VFT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1290034351. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54653 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 37.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.24000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 2VFR REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 53.59250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.31100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 53.59250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.31100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2194 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A -3 REMARK 465 SER A -2 REMARK 465 GLU A -1 REMARK 465 PHE A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 418 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND1 HIS A 24 O HOH A 2049 1.74 REMARK 500 O HOH A 2085 O HOH A 2168 1.92 REMARK 500 CE1 HIS A 24 O HOH A 2049 2.04 REMARK 500 OE2 GLU A 138 O HOH A 2252 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 SD MET A 253 O HOH A 2217 4546 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 189 76.47 59.50 REMARK 500 ARG A 217 -94.74 -104.44 REMARK 500 GLN A 261 -154.66 -119.14 REMARK 500 ARG A 271 -33.74 -133.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2055 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A2078 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A2083 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A2100 DISTANCE = 6.90 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VFR RELATED DB: PDB REMARK 900 ALDITOL OXIDASE FROM STREPTOMYCES COELICOLOR A3(2): NATIVE ENZYME REMARK 900 RELATED ID: 2VFS RELATED DB: PDB REMARK 900 ALDITOL OXIDASE FROM STREPTOMYCES COELICOLOR A3(2): COMPLEX WITH REMARK 900 XYLITOL REMARK 900 RELATED ID: 2VFU RELATED DB: PDB REMARK 900 ALDITOL OXIDASE FROM STREPTOMYCES COELICOLOR A3(2): COMPLEX WITH REMARK 900 MANNITOL REMARK 900 RELATED ID: 2VFV RELATED DB: PDB REMARK 900 ALDITOL OXIDASE FROM STREPTOMYCES COELICOLOR A3(2): COMPLEX WITH REMARK 900 SULPHITE DBREF 2VFT A -3 0 PDB 2VFT 2VFT -3 0 DBREF 2VFT A 1 418 UNP Q9ZBU1 XYOA_STRCO 1 418 SEQRES 1 A 422 ILE SER GLU PHE MET SER ASP ILE THR VAL THR ASN TRP SEQRES 2 A 422 ALA GLY ASN ILE THR TYR THR ALA LYS GLU LEU LEU ARG SEQRES 3 A 422 PRO HIS SER LEU ASP ALA LEU ARG ALA LEU VAL ALA ASP SEQRES 4 A 422 SER ALA ARG VAL ARG VAL LEU GLY SER GLY HIS SER PHE SEQRES 5 A 422 ASN GLU ILE ALA GLU PRO GLY ASP GLY GLY VAL LEU LEU SEQRES 6 A 422 SER LEU ALA GLY LEU PRO SER VAL VAL ASP VAL ASP THR SEQRES 7 A 422 ALA ALA ARG THR VAL ARG VAL GLY GLY GLY VAL ARG TYR SEQRES 8 A 422 ALA GLU LEU ALA ARG VAL VAL HIS ALA ARG GLY LEU ALA SEQRES 9 A 422 LEU PRO ASN MET ALA SER LEU PRO HIS ILE SER VAL ALA SEQRES 10 A 422 GLY SER VAL ALA THR GLY THR HIS GLY SER GLY VAL GLY SEQRES 11 A 422 ASN GLY SER LEU ALA SER VAL VAL ARG GLU VAL GLU LEU SEQRES 12 A 422 VAL THR ALA ASP GLY SER THR VAL VAL ILE ALA ARG GLY SEQRES 13 A 422 ASP GLU ARG PHE GLY GLY ALA VAL THR SER LEU GLY ALA SEQRES 14 A 422 LEU GLY VAL VAL THR SER LEU THR LEU ASP LEU GLU PRO SEQRES 15 A 422 ALA TYR GLU MET GLU GLN HIS VAL PHE THR GLU LEU PRO SEQRES 16 A 422 LEU ALA GLY LEU ASP PRO ALA THR PHE GLU THR VAL MET SEQRES 17 A 422 ALA ALA ALA TYR SER VAL SER LEU PHE THR ASP TRP ARG SEQRES 18 A 422 ALA PRO GLY PHE ARG GLN VAL TRP LEU LYS ARG ARG THR SEQRES 19 A 422 ASP ARG PRO LEU ASP GLY PHE PRO TYR ALA ALA PRO ALA SEQRES 20 A 422 ALA GLU LYS MET HIS PRO VAL PRO GLY MET PRO ALA VAL SEQRES 21 A 422 ASN CYS THR GLU GLN PHE GLY VAL PRO GLY PRO TRP HIS SEQRES 22 A 422 GLU ARG LEU PRO HIS PHE ARG ALA GLU PHE THR PRO SER SEQRES 23 A 422 SER GLY ALA GLU LEU GLN SER GLU TYR LEU MET PRO ARG SEQRES 24 A 422 GLU HIS ALA LEU ALA ALA LEU HIS ALA MET ASP ALA ILE SEQRES 25 A 422 ARG GLU THR LEU ALA PRO VAL LEU GLN THR CYS GLU ILE SEQRES 26 A 422 ARG THR VAL ALA ALA ASP ALA GLN TRP LEU SER PRO ALA SEQRES 27 A 422 TYR GLY ARG ASP THR VAL ALA ALA HIS PHE THR TRP VAL SEQRES 28 A 422 GLU ASP THR ALA ALA VAL LEU PRO VAL VAL ARG ARG LEU SEQRES 29 A 422 GLU GLU ALA LEU VAL PRO PHE ALA ALA ARG PRO HIS TRP SEQRES 30 A 422 GLY LYS VAL PHE THR VAL PRO ALA GLY GLU LEU ARG ALA SEQRES 31 A 422 LEU TYR PRO ARG LEU ALA ASP PHE GLY ALA LEU ALA GLY SEQRES 32 A 422 ALA LEU ASP PRO ALA GLY LYS PHE THR ASN ALA PHE VAL SEQRES 33 A 422 ARG GLY VAL LEU ALA GLY HET FAD A1418 53 HET SOR A1419 12 HET CL A1420 1 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM SOR SORBITOL HETNAM CL CHLORIDE ION HETSYN SOR D-SORBITOL; D-GLUCITOL FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 SOR C6 H14 O6 FORMUL 4 CL CL 1- FORMUL 5 HOH *560(H2 O) HELIX 1 1 SER A 25 ASP A 35 1 11 HELIX 2 2 ARG A 86 ARG A 97 1 12 HELIX 3 3 SER A 111 THR A 118 1 8 HELIX 4 4 SER A 129 SER A 132 5 4 HELIX 5 5 ARG A 155 ALA A 159 5 5 HELIX 6 6 ASP A 196 ALA A 205 1 10 HELIX 7 7 PRO A 254 ASN A 257 5 4 HELIX 8 8 HIS A 269 ARG A 271 5 3 HELIX 9 9 HIS A 297 ALA A 307 1 11 HELIX 10 10 ILE A 308 ALA A 313 1 6 HELIX 11 11 ASP A 349 VAL A 365 1 17 HELIX 12 12 PRO A 366 ALA A 368 5 3 HELIX 13 13 PRO A 380 LEU A 387 1 8 HELIX 14 14 ARG A 390 ASP A 402 1 13 HELIX 15 15 ASN A 409 ALA A 417 1 9 SHEET 1 AA 2 VAL A 39 LEU A 42 0 SHEET 2 AA 2 VAL A 59 SER A 62 1 O VAL A 59 N ARG A 40 SHEET 1 AB 5 VAL A 70 ASP A 73 0 SHEET 2 AB 5 THR A 78 GLY A 82 -1 O THR A 78 N ASP A 73 SHEET 3 AB 5 VAL A 168 ASP A 175 -1 O LEU A 172 N VAL A 81 SHEET 4 AB 5 VAL A 134 VAL A 140 -1 N ARG A 135 O THR A 173 SHEET 5 AB 5 THR A 146 ALA A 150 -1 O VAL A 147 N LEU A 139 SHEET 1 AC 2 LEU A 99 ALA A 100 0 SHEET 2 AC 2 GLU A 177 PRO A 178 -1 O GLU A 177 N ALA A 100 SHEET 1 AD 3 ALA A 241 PRO A 242 0 SHEET 2 AD 3 GLU A 181 LEU A 190 -1 O THR A 188 N ALA A 241 SHEET 3 AD 3 GLY A 266 PRO A 267 -1 O GLY A 266 N MET A 182 SHEET 1 AE 8 ALA A 241 PRO A 242 0 SHEET 2 AE 8 GLU A 181 LEU A 190 -1 O THR A 188 N ALA A 241 SHEET 3 AE 8 PHE A 221 ARG A 229 -1 O PHE A 221 N LEU A 190 SHEET 4 AE 8 SER A 209 THR A 214 -1 O SER A 209 N LYS A 227 SHEET 5 AE 8 LEU A 316 VAL A 324 -1 O CYS A 319 N THR A 214 SHEET 6 AE 8 THR A 339 TRP A 346 -1 O THR A 339 N VAL A 324 SHEET 7 AE 8 LEU A 287 PRO A 294 -1 O LEU A 287 N TRP A 346 SHEET 8 AE 8 ARG A 370 PRO A 371 -1 O ARG A 370 N LEU A 292 LINK ND1 HIS A 46 C8M FAD A1418 1555 1555 1.70 CRYST1 107.185 66.622 59.134 90.00 95.09 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009330 0.000000 0.000831 0.00000 SCALE2 0.000000 0.015010 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016978 0.00000