HEADER TRANSFERASE 07-NOV-07 2VG1 TITLE RV1086 E,E-FARNESYL DIPHOSPHATE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHORT-CHAIN Z-ISOPRENYL DIPHOSPHATE SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 29-256; COMPND 5 SYNONYM: Z-FPP SYNTHETASE, Z-ISOPRENYL DIPHOSPHATE SYNTHASE, Z-FPPS, COMPND 6 RV1086; COMPND 7 EC: 2.5.1.68; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PEPTIDOGLYCAN SYNTHESIS, CELL WALL BIOGENESIS/DEGRADATION, SECRETED, KEYWDS 2 CELL SHAPE, TRANSFERASE, PRENYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.H.NAISMITH,W.WANG,C.DONG REVDAT 8 08-MAY-24 2VG1 1 REMARK REVDAT 7 02-MAY-18 2VG1 1 REMARK REVDAT 6 07-FEB-18 2VG1 1 JRNL REVDAT 5 13-DEC-17 2VG1 1 SOURCE REVDAT 4 13-JUL-11 2VG1 1 VERSN REVDAT 3 24-FEB-09 2VG1 1 VERSN REVDAT 2 22-JUL-08 2VG1 1 JRNL REMARK ATOM REVDAT 1 13-NOV-07 2VG1 0 JRNL AUTH W.WANG,C.DONG,M.MCNEIL,D.KAUR,S.MAHAPATRA,D.C.CRICK, JRNL AUTH 2 J.H.NAISMITH JRNL TITL THE STRUCTURAL BASIS OF CHAIN LENGTH CONTROL IN RV1086. JRNL REF J. MOL. BIOL. V. 381 129 2008 JRNL REFN ESSN 1089-8638 JRNL PMID 18597781 JRNL DOI 10.1016/J.JMB.2008.05.060 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 47540 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2547 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3479 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 202 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3568 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 479 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.16000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : 0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.118 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.114 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.549 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3759 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2542 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5114 ; 1.128 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6102 ; 0.826 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 470 ; 4.797 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 182 ;34.397 ;22.637 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 591 ;11.554 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;13.729 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 559 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4239 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 814 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 874 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2909 ; 0.191 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1863 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1968 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 340 ; 0.135 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.159 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 78 ; 0.301 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 35 ; 0.135 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2978 ; 0.905 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3673 ; 1.071 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1707 ; 1.904 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1435 ; 2.753 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 29 A 256 6 REMARK 3 1 B 29 B 256 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 2941 ; 0.66 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 2941 ; 1.73 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 256 REMARK 3 ORIGIN FOR THE GROUP (A): -1.9360 0.5390 2.8270 REMARK 3 T TENSOR REMARK 3 T11: -0.1524 T22: -0.1644 REMARK 3 T33: -0.1781 T12: -0.0020 REMARK 3 T13: -0.0158 T23: -0.0211 REMARK 3 L TENSOR REMARK 3 L11: 1.2626 L22: 0.9485 REMARK 3 L33: 1.1491 L12: 0.1570 REMARK 3 L13: -0.4643 L23: -0.2376 REMARK 3 S TENSOR REMARK 3 S11: 0.0292 S12: -0.0078 S13: -0.0443 REMARK 3 S21: -0.0825 S22: -0.0417 S23: 0.0806 REMARK 3 S31: 0.0058 S32: -0.0436 S33: 0.0124 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 29 B 256 REMARK 3 ORIGIN FOR THE GROUP (A): 2.4150 -1.4790 31.8680 REMARK 3 T TENSOR REMARK 3 T11: -0.1458 T22: -0.1882 REMARK 3 T33: -0.1929 T12: 0.0057 REMARK 3 T13: 0.0345 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 1.4323 L22: 0.5219 REMARK 3 L33: 1.3999 L12: -0.0268 REMARK 3 L13: 0.4590 L23: -0.1555 REMARK 3 S TENSOR REMARK 3 S11: -0.0131 S12: 0.0755 S13: -0.0131 REMARK 3 S21: 0.0051 S22: -0.0150 S23: 0.0171 REMARK 3 S31: 0.0695 S32: 0.0453 S33: 0.0282 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VG1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1290034367. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SCALA REMARK 200 DATA SCALING SOFTWARE : MOSFLM REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50127 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.41350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.63300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.04600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.63300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.41350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.04600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 93 123.53 -35.90 REMARK 500 GLN A 216 64.34 -104.15 REMARK 500 GLN B 216 66.35 -100.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2020 DISTANCE = 7.03 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A1257 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B1257 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1258 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1259 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1258 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1259 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1261 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FPP B1262 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VFW RELATED DB: PDB REMARK 900 RV1086 NATIVE REMARK 900 RELATED ID: 2VG0 RELATED DB: PDB REMARK 900 RV1086 CITRONELLY PYROPHOSPHATE COMPLEX DBREF 2VG1 A 29 256 UNP O53434 ZFPP_MYCTU 29 256 DBREF 2VG1 B 29 256 UNP O53434 ZFPP_MYCTU 29 256 SEQRES 1 A 228 SER ASP LEU PRO ARG HIS ILE ALA VAL LEU CYS ASP GLY SEQRES 2 A 228 ASN ARG ARG TRP ALA ARG SER ALA GLY TYR ASP ASP VAL SEQRES 3 A 228 SER TYR GLY TYR ARG MET GLY ALA ALA LYS ILE ALA GLU SEQRES 4 A 228 MET LEU ARG TRP CYS HIS GLU ALA GLY ILE GLU LEU ALA SEQRES 5 A 228 THR VAL TYR LEU LEU SER THR GLU ASN LEU GLN ARG ASP SEQRES 6 A 228 PRO ASP GLU LEU ALA ALA LEU ILE GLU ILE ILE THR ASP SEQRES 7 A 228 VAL VAL GLU GLU ILE CYS ALA PRO ALA ASN HIS TRP SER SEQRES 8 A 228 VAL ARG THR VAL GLY ASP LEU GLY LEU ILE GLY GLU GLU SEQRES 9 A 228 PRO ALA ARG ARG LEU ARG GLY ALA VAL GLU SER THR PRO SEQRES 10 A 228 GLU VAL ALA SER PHE HIS VAL ASN VAL ALA VAL GLY TYR SEQRES 11 A 228 GLY GLY ARG ARG GLU ILE VAL ASP ALA VAL ARG ALA LEU SEQRES 12 A 228 LEU SER LYS GLU LEU ALA ASN GLY ALA THR ALA GLU GLU SEQRES 13 A 228 LEU VAL ASP ALA VAL THR VAL GLU GLY ILE SER GLU ASN SEQRES 14 A 228 LEU TYR THR SER GLY GLN PRO ASP PRO ASP LEU VAL ILE SEQRES 15 A 228 ARG THR SER GLY GLU GLN ARG LEU SER GLY PHE LEU LEU SEQRES 16 A 228 TRP GLN SER ALA TYR SER GLU MET TRP PHE THR GLU ALA SEQRES 17 A 228 HIS TRP PRO ALA PHE ARG HIS VAL ASP PHE LEU ARG ALA SEQRES 18 A 228 LEU ARG ASP TYR SER ALA ARG SEQRES 1 B 228 SER ASP LEU PRO ARG HIS ILE ALA VAL LEU CYS ASP GLY SEQRES 2 B 228 ASN ARG ARG TRP ALA ARG SER ALA GLY TYR ASP ASP VAL SEQRES 3 B 228 SER TYR GLY TYR ARG MET GLY ALA ALA LYS ILE ALA GLU SEQRES 4 B 228 MET LEU ARG TRP CYS HIS GLU ALA GLY ILE GLU LEU ALA SEQRES 5 B 228 THR VAL TYR LEU LEU SER THR GLU ASN LEU GLN ARG ASP SEQRES 6 B 228 PRO ASP GLU LEU ALA ALA LEU ILE GLU ILE ILE THR ASP SEQRES 7 B 228 VAL VAL GLU GLU ILE CYS ALA PRO ALA ASN HIS TRP SER SEQRES 8 B 228 VAL ARG THR VAL GLY ASP LEU GLY LEU ILE GLY GLU GLU SEQRES 9 B 228 PRO ALA ARG ARG LEU ARG GLY ALA VAL GLU SER THR PRO SEQRES 10 B 228 GLU VAL ALA SER PHE HIS VAL ASN VAL ALA VAL GLY TYR SEQRES 11 B 228 GLY GLY ARG ARG GLU ILE VAL ASP ALA VAL ARG ALA LEU SEQRES 12 B 228 LEU SER LYS GLU LEU ALA ASN GLY ALA THR ALA GLU GLU SEQRES 13 B 228 LEU VAL ASP ALA VAL THR VAL GLU GLY ILE SER GLU ASN SEQRES 14 B 228 LEU TYR THR SER GLY GLN PRO ASP PRO ASP LEU VAL ILE SEQRES 15 B 228 ARG THR SER GLY GLU GLN ARG LEU SER GLY PHE LEU LEU SEQRES 16 B 228 TRP GLN SER ALA TYR SER GLU MET TRP PHE THR GLU ALA SEQRES 17 B 228 HIS TRP PRO ALA PHE ARG HIS VAL ASP PHE LEU ARG ALA SEQRES 18 B 228 LEU ARG ASP TYR SER ALA ARG HET PO4 A1257 5 HET GOL A1258 6 HET GOL A1259 6 HET PO4 B1257 5 HET GOL B1258 6 HET GOL B1259 6 HET GOL B1260 6 HET GOL B1261 6 HET FPP B1262 24 HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETNAM FPP FARNESYL DIPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 GOL 6(C3 H8 O3) FORMUL 11 FPP C15 H28 O7 P2 FORMUL 12 HOH *479(H2 O) HELIX 1 1 GLY A 41 ALA A 49 1 9 HELIX 2 2 VAL A 54 GLY A 76 1 23 HELIX 3 3 GLU A 88 ARG A 92 5 5 HELIX 4 4 ASP A 93 CYS A 112 1 20 HELIX 5 5 ALA A 113 HIS A 117 5 5 HELIX 6 6 ASP A 125 ILE A 129 5 5 HELIX 7 7 GLY A 130 SER A 143 1 14 HELIX 8 8 GLY A 159 ASN A 178 1 20 HELIX 9 9 THR A 181 VAL A 189 1 9 HELIX 10 10 THR A 190 LEU A 198 1 9 HELIX 11 11 HIS A 237 PHE A 241 5 5 HELIX 12 12 ARG A 242 ARG A 256 1 15 HELIX 13 13 GLY B 41 ALA B 49 1 9 HELIX 14 14 VAL B 54 GLY B 76 1 23 HELIX 15 15 GLU B 88 ARG B 92 5 5 HELIX 16 16 ASP B 93 CYS B 112 1 20 HELIX 17 17 ALA B 113 HIS B 117 5 5 HELIX 18 18 ASP B 125 ILE B 129 5 5 HELIX 19 19 GLY B 130 SER B 143 1 14 HELIX 20 20 GLY B 159 ASN B 178 1 20 HELIX 21 21 THR B 181 ASP B 187 1 7 HELIX 22 22 THR B 190 GLU B 196 1 7 HELIX 23 23 HIS B 237 PHE B 241 5 5 HELIX 24 24 ARG B 242 ARG B 256 1 15 SHEET 1 AA 6 SER A 119 VAL A 123 0 SHEET 2 AA 6 HIS A 151 TYR A 158 1 O VAL A 152 N ARG A 121 SHEET 3 AA 6 LEU A 79 SER A 86 1 O ALA A 80 N ASN A 153 SHEET 4 AA 6 HIS A 34 LEU A 38 1 O ILE A 35 N THR A 81 SHEET 5 AA 6 LEU A 208 ARG A 211 1 O LEU A 208 N ALA A 36 SHEET 6 AA 6 GLU A 230 PHE A 233 1 O GLU A 230 N VAL A 209 SHEET 1 BA 6 SER B 119 VAL B 123 0 SHEET 2 BA 6 HIS B 151 TYR B 158 1 O VAL B 152 N ARG B 121 SHEET 3 BA 6 LEU B 79 SER B 86 1 O ALA B 80 N ASN B 153 SHEET 4 BA 6 HIS B 34 LEU B 38 1 O ILE B 35 N THR B 81 SHEET 5 BA 6 LEU B 208 ARG B 211 1 O LEU B 208 N ALA B 36 SHEET 6 BA 6 GLU B 230 PHE B 233 1 O GLU B 230 N VAL B 209 SITE 1 AC1 8 GLY A 41 ASN A 42 ARG A 43 ARG A 44 SITE 2 AC1 8 HOH A2231 HOH A2232 HOH A2233 HOH A2234 SITE 1 AC2 7 ASP B 40 GLY B 41 ASN B 42 ARG B 43 SITE 2 AC2 7 ARG B 44 HOH B2239 HOH B2240 SITE 1 AC3 6 GLU A 163 ALA A 167 ASN A 197 LEU A 198 SITE 2 AC3 6 TYR A 199 HOH A2235 SITE 1 AC4 8 ASN A 42 TYR A 58 GLY A 61 ALA A 62 SITE 2 AC4 8 ILE A 65 LEU A 84 ILE A 103 TRP A 238 SITE 1 AC5 7 GLU B 163 ASP B 166 ALA B 167 ASN B 197 SITE 2 AC5 7 LEU B 198 TYR B 199 HOH B2241 SITE 1 AC6 5 ARG A 70 ARG B 242 HIS B 243 VAL B 244 SITE 2 AC6 5 HOH B2038 SITE 1 AC7 6 ARG A 162 ASP B 52 THR B 190 VAL B 191 SITE 2 AC7 6 GLU B 192 HOH B2242 SITE 1 AC8 8 VAL A 191 TYR A 228 HOH A2204 GLY B 159 SITE 2 AC8 8 GLY B 160 ARG B 161 ARG B 162 HOH B2243 SITE 1 AC9 13 CYS B 39 ASP B 40 ASN B 42 GLY B 61 SITE 2 AC9 13 LEU B 84 SER B 86 GLU B 88 ASN B 89 SITE 3 AC9 13 ARG B 92 ARG B 211 ARG B 217 SER B 219 SITE 4 AC9 13 HOH B2244 CRYST1 58.827 74.092 103.266 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016999 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013497 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009684 0.00000