HEADER CELL CYCLE 14-NOV-07 2VGN TITLE STRUCTURE OF S. CEREVISIAE DOM34, A TRANSLATION TERMINATION-LIKE TITLE 2 FACTOR INVOLVED IN RNA QUALITY CONTROL PATHWAYS AND INTERACTING WITH TITLE 3 HBS1 (SELENOMET-LABELED PROTEIN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DOM34; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: SEMET SUBSTITUTED PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: S288C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET9 KEYWDS TRANSLATION TERMINATION FACTOR, PROTEIN BIOSYNTHESIS, TRANSLATION KEYWDS 2 REGULATION, CELL DIVISION, MRNA DEGRADATION, NUCLEOTIDE BINDING, KEYWDS 3 MITOSIS, MEIOSIS, CYTOPLASM, CELL CYCLE, NO-GO DECAY EXPDTA X-RAY DIFFRACTION AUTHOR M.GRAILLE,M.CHAILLET,H.VAN TILBEURGH REVDAT 4 17-MAR-21 2VGN 1 TITLE LINK REVDAT 3 07-MAR-18 2VGN 1 SOURCE REVDAT 2 24-FEB-09 2VGN 1 VERSN REVDAT 1 22-JAN-08 2VGN 0 JRNL AUTH M.GRAILLE,M.CHAILLET,H.VAN TILBEURGH JRNL TITL STRUCTURE OF YEAST DOM34: A PROTEIN RELATED TO TRANSLATION JRNL TITL 2 TERMINATION FACTOR ERF1 AND INVOLVED IN NO-GO DECAY. JRNL REF J.BIOL.CHEM. V. 283 7145 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18180287 JRNL DOI 10.1074/JBC.M708224200 REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 13.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 69285 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3498 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 25 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.54 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2516 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE : 0.3284 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 150 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5760 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 228 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.100 REMARK 3 BOND ANGLES (DEGREES) : 1.330 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2VGN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1290034422. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69296 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 14.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.750 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7.5% POLYETHYLENE GLYCOL 4000, 50MM REMARK 280 NAH2PO4 PH 6.7, 3% XYLITOL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 108.17000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 216.34000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 216.34000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 108.17000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2006 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2018 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 48 REMARK 465 SER A 49 REMARK 465 LYS A 50 REMARK 465 LEU A 51 REMARK 465 ASP A 52 REMARK 465 GLU A 53 REMARK 465 ALA A 54 REMARK 465 GLY A 55 REMARK 465 LYS A 56 REMARK 465 LYS A 57 REMARK 465 LYS A 58 REMARK 465 SER A 59 REMARK 465 THR A 60 REMARK 465 SER A 171 REMARK 465 MSE A 172 REMARK 465 PRO A 173 REMARK 465 LYS A 174 REMARK 465 LYS A 175 REMARK 465 LYS A 176 REMARK 465 ARG A 177 REMARK 465 THR A 178 REMARK 465 THR A 179 REMARK 465 ASP A 383 REMARK 465 GLY A 384 REMARK 465 GLU A 385 REMARK 465 GLU A 386 REMARK 465 SER B 10 REMARK 465 PHE B 11 REMARK 465 ASN B 12 REMARK 465 THR B 48 REMARK 465 SER B 49 REMARK 465 LYS B 50 REMARK 465 LEU B 51 REMARK 465 ASP B 52 REMARK 465 GLU B 53 REMARK 465 ALA B 54 REMARK 465 GLY B 55 REMARK 465 LYS B 56 REMARK 465 LYS B 57 REMARK 465 LYS B 58 REMARK 465 SER B 59 REMARK 465 SER B 171 REMARK 465 MSE B 172 REMARK 465 PRO B 173 REMARK 465 LYS B 174 REMARK 465 LYS B 175 REMARK 465 LYS B 176 REMARK 465 ARG B 177 REMARK 465 THR B 178 REMARK 465 THR B 179 REMARK 465 ASP B 180 REMARK 465 ASP B 382 REMARK 465 ASP B 383 REMARK 465 GLY B 384 REMARK 465 GLU B 385 REMARK 465 GLU B 386 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND1 HIS A 290 OD1 ASP A 295 2.12 REMARK 500 OE1 GLU B 302 OE1 GLU B 334 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 147 CA - CB - CG ANGL. DEV. = 18.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 -9.97 82.88 REMARK 500 LYS A 46 40.53 -100.28 REMARK 500 GLN A 166 138.89 171.31 REMARK 500 PHE A 191 -85.04 -53.75 REMARK 500 ASN A 236 101.83 -59.46 REMARK 500 ASN A 242 41.91 -141.72 REMARK 500 LEU A 256 -35.05 -38.87 REMARK 500 THR A 366 -5.21 82.86 REMARK 500 ASP B 38 -16.86 83.89 REMARK 500 GLN B 148 -162.83 -114.35 REMARK 500 GLN B 166 125.14 171.79 REMARK 500 LYS B 183 -93.23 -72.45 REMARK 500 HIS B 325 51.44 -144.44 REMARK 500 THR B 366 1.42 82.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1382 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1383 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B1384 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VGM RELATED DB: PDB REMARK 900 STRUCTURE OF YEAST DOM34 : A PROTEIN RELATED TO TRANSLATION REMARK 900 TERMINATION FACTOR ERF1 AND INVOLVED IN NO-GO DECAY. DBREF 2VGN A 1 386 UNP P33309 DOM34_YEAST 1 386 DBREF 2VGN B 1 386 UNP P33309 DOM34_YEAST 1 386 SEQRES 1 A 386 MSE LYS VAL ILE SER LEU LYS LYS ASP SER PHE ASN LYS SEQRES 2 A 386 GLY GLY ALA VAL ILE THR LEU LEU PRO GLU ASP LYS GLU SEQRES 3 A 386 ASP LEU PHE THR VAL TYR GLN ILE VAL ASP LYS ASP ASP SEQRES 4 A 386 GLU LEU ILE PHE LYS LYS LYS PHE THR SER LYS LEU ASP SEQRES 5 A 386 GLU ALA GLY LYS LYS LYS SER THR ASP LEU VAL LYS LEU SEQRES 6 A 386 LYS ILE LYS VAL ILE SER GLU ASP PHE ASP MSE LYS ASP SEQRES 7 A 386 GLU TYR LEU LYS TYR LYS GLY VAL THR VAL THR ASP GLU SEQRES 8 A 386 SER GLY ALA SER ASN VAL ASP ILE PRO VAL GLY LYS TYR SEQRES 9 A 386 LEU SER PHE THR LEU ASP TYR VAL TYR PRO PHE THR ILE SEQRES 10 A 386 ILE LYS GLN ASN PHE ASN LYS PHE MSE GLN LYS LEU LEU SEQRES 11 A 386 ASN GLU ALA CYS ASN ILE GLU TYR LYS SER ASP THR ALA SEQRES 12 A 386 ALA VAL VAL LEU GLN GLU GLY ILE ALA HIS VAL CYS LEU SEQRES 13 A 386 VAL THR SER SER SER THR ILE LEU LYS GLN LYS ILE GLU SEQRES 14 A 386 TYR SER MSE PRO LYS LYS LYS ARG THR THR ASP VAL LEU SEQRES 15 A 386 LYS PHE ASP GLU LYS THR GLU LYS PHE TYR LYS ALA ILE SEQRES 16 A 386 TYR SER ALA MSE LYS LYS ASP LEU ASN PHE ASP LYS LEU SEQRES 17 A 386 LYS THR ILE ILE LEU CYS SER PRO GLY PHE TYR ALA LYS SEQRES 18 A 386 ILE LEU MSE ASP LYS ILE PHE GLN TYR ALA GLU GLU GLU SEQRES 19 A 386 HIS ASN LYS LYS ILE LEU ASP ASN LYS GLY MSE PHE PHE SEQRES 20 A 386 ILE ALA HIS CYS SER THR GLY TYR LEU GLN GLY ILE ASN SEQRES 21 A 386 GLU VAL LEU LYS ASN PRO LEU TYR ALA SER LYS LEU GLN SEQRES 22 A 386 ASP THR LYS TYR SER LYS GLU ILE MSE VAL MSE ASP GLU SEQRES 23 A 386 PHE LEU LEU HIS LEU ASN LYS ASP ASP ASP LYS ALA TRP SEQRES 24 A 386 TYR GLY GLU LYS GLU VAL VAL LYS ALA ALA GLU TYR GLY SEQRES 25 A 386 ALA ILE SER TYR LEU LEU LEU THR ASP LYS VAL LEU HIS SEQRES 26 A 386 SER ASP ASN ILE ALA GLN ARG GLU GLU TYR LEU LYS LEU SEQRES 27 A 386 MSE ASP SER VAL GLU SER ASN GLY GLY LYS ALA LEU VAL SEQRES 28 A 386 LEU SER THR LEU HIS SER LEU GLY GLU GLU LEU ASP GLN SEQRES 29 A 386 LEU THR GLY ILE ALA CYS ILE LEU LYS TYR PRO LEU PRO SEQRES 30 A 386 ASP LEU ASP GLU ASP ASP GLY GLU GLU SEQRES 1 B 386 MSE LYS VAL ILE SER LEU LYS LYS ASP SER PHE ASN LYS SEQRES 2 B 386 GLY GLY ALA VAL ILE THR LEU LEU PRO GLU ASP LYS GLU SEQRES 3 B 386 ASP LEU PHE THR VAL TYR GLN ILE VAL ASP LYS ASP ASP SEQRES 4 B 386 GLU LEU ILE PHE LYS LYS LYS PHE THR SER LYS LEU ASP SEQRES 5 B 386 GLU ALA GLY LYS LYS LYS SER THR ASP LEU VAL LYS LEU SEQRES 6 B 386 LYS ILE LYS VAL ILE SER GLU ASP PHE ASP MSE LYS ASP SEQRES 7 B 386 GLU TYR LEU LYS TYR LYS GLY VAL THR VAL THR ASP GLU SEQRES 8 B 386 SER GLY ALA SER ASN VAL ASP ILE PRO VAL GLY LYS TYR SEQRES 9 B 386 LEU SER PHE THR LEU ASP TYR VAL TYR PRO PHE THR ILE SEQRES 10 B 386 ILE LYS GLN ASN PHE ASN LYS PHE MSE GLN LYS LEU LEU SEQRES 11 B 386 ASN GLU ALA CYS ASN ILE GLU TYR LYS SER ASP THR ALA SEQRES 12 B 386 ALA VAL VAL LEU GLN GLU GLY ILE ALA HIS VAL CYS LEU SEQRES 13 B 386 VAL THR SER SER SER THR ILE LEU LYS GLN LYS ILE GLU SEQRES 14 B 386 TYR SER MSE PRO LYS LYS LYS ARG THR THR ASP VAL LEU SEQRES 15 B 386 LYS PHE ASP GLU LYS THR GLU LYS PHE TYR LYS ALA ILE SEQRES 16 B 386 TYR SER ALA MSE LYS LYS ASP LEU ASN PHE ASP LYS LEU SEQRES 17 B 386 LYS THR ILE ILE LEU CYS SER PRO GLY PHE TYR ALA LYS SEQRES 18 B 386 ILE LEU MSE ASP LYS ILE PHE GLN TYR ALA GLU GLU GLU SEQRES 19 B 386 HIS ASN LYS LYS ILE LEU ASP ASN LYS GLY MSE PHE PHE SEQRES 20 B 386 ILE ALA HIS CYS SER THR GLY TYR LEU GLN GLY ILE ASN SEQRES 21 B 386 GLU VAL LEU LYS ASN PRO LEU TYR ALA SER LYS LEU GLN SEQRES 22 B 386 ASP THR LYS TYR SER LYS GLU ILE MSE VAL MSE ASP GLU SEQRES 23 B 386 PHE LEU LEU HIS LEU ASN LYS ASP ASP ASP LYS ALA TRP SEQRES 24 B 386 TYR GLY GLU LYS GLU VAL VAL LYS ALA ALA GLU TYR GLY SEQRES 25 B 386 ALA ILE SER TYR LEU LEU LEU THR ASP LYS VAL LEU HIS SEQRES 26 B 386 SER ASP ASN ILE ALA GLN ARG GLU GLU TYR LEU LYS LEU SEQRES 27 B 386 MSE ASP SER VAL GLU SER ASN GLY GLY LYS ALA LEU VAL SEQRES 28 B 386 LEU SER THR LEU HIS SER LEU GLY GLU GLU LEU ASP GLN SEQRES 29 B 386 LEU THR GLY ILE ALA CYS ILE LEU LYS TYR PRO LEU PRO SEQRES 30 B 386 ASP LEU ASP GLU ASP ASP GLY GLU GLU MODRES 2VGN MSE A 1 MET SELENOMETHIONINE MODRES 2VGN MSE A 76 MET SELENOMETHIONINE MODRES 2VGN MSE A 126 MET SELENOMETHIONINE MODRES 2VGN MSE A 199 MET SELENOMETHIONINE MODRES 2VGN MSE A 224 MET SELENOMETHIONINE MODRES 2VGN MSE A 245 MET SELENOMETHIONINE MODRES 2VGN MSE A 282 MET SELENOMETHIONINE MODRES 2VGN MSE A 284 MET SELENOMETHIONINE MODRES 2VGN MSE A 339 MET SELENOMETHIONINE MODRES 2VGN MSE B 1 MET SELENOMETHIONINE MODRES 2VGN MSE B 76 MET SELENOMETHIONINE MODRES 2VGN MSE B 126 MET SELENOMETHIONINE MODRES 2VGN MSE B 199 MET SELENOMETHIONINE MODRES 2VGN MSE B 224 MET SELENOMETHIONINE MODRES 2VGN MSE B 245 MET SELENOMETHIONINE MODRES 2VGN MSE B 282 MET SELENOMETHIONINE MODRES 2VGN MSE B 284 MET SELENOMETHIONINE MODRES 2VGN MSE B 339 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 76 8 HET MSE A 126 8 HET MSE A 199 8 HET MSE A 224 8 HET MSE A 245 8 HET MSE A 282 8 HET MSE A 284 8 HET MSE A 339 8 HET MSE B 1 8 HET MSE B 76 8 HET MSE B 126 8 HET MSE B 199 8 HET MSE B 224 8 HET MSE B 245 8 HET MSE B 282 8 HET MSE B 284 8 HET MSE B 339 8 HET GOL B1382 6 HET GOL B1383 6 HET PO4 B1384 5 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 18(C5 H11 N O2 SE) FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 PO4 O4 P 3- FORMUL 6 HOH *228(H2 O) HELIX 1 1 ASP A 24 GLN A 33 1 10 HELIX 2 2 ASN A 123 ALA A 133 1 11 HELIX 3 3 ASP A 185 LEU A 203 1 19 HELIX 4 4 PHE A 218 GLU A 234 1 17 HELIX 5 5 ASN A 236 ASP A 241 1 6 HELIX 6 6 ASN A 242 GLY A 244 5 3 HELIX 7 7 LEU A 256 ASN A 265 1 10 HELIX 8 8 TYR A 268 TYR A 277 1 10 HELIX 9 9 TYR A 277 ASN A 292 1 16 HELIX 10 10 GLY A 301 TYR A 311 1 11 HELIX 11 11 LYS A 322 SER A 326 5 5 HELIX 12 12 ASN A 328 ASN A 345 1 18 HELIX 13 13 HIS A 356 LEU A 365 1 10 HELIX 14 14 ASP B 24 GLN B 33 1 10 HELIX 15 15 ASN B 123 CYS B 134 1 12 HELIX 16 16 ASN B 135 LYS B 139 5 5 HELIX 17 17 ASP B 185 LEU B 203 1 19 HELIX 18 18 PHE B 218 HIS B 235 1 18 HELIX 19 19 ASN B 236 ASP B 241 1 6 HELIX 20 20 ASN B 242 GLY B 244 5 3 HELIX 21 21 LEU B 256 ASN B 265 1 10 HELIX 22 22 TYR B 268 TYR B 277 1 10 HELIX 23 23 TYR B 277 LYS B 293 1 17 HELIX 24 24 GLY B 301 GLU B 310 1 10 HELIX 25 25 LYS B 322 HIS B 325 5 4 HELIX 26 26 ASN B 328 ASN B 345 1 18 HELIX 27 27 HIS B 356 GLN B 364 1 9 SHEET 1 AA 7 LYS A 2 LYS A 8 0 SHEET 2 AA 7 ALA A 16 LEU A 21 -1 O VAL A 17 N LYS A 7 SHEET 3 AA 7 PHE A 115 LYS A 119 -1 O PHE A 115 N LEU A 20 SHEET 4 AA 7 GLU A 40 LYS A 45 -1 O GLU A 40 N ILE A 118 SHEET 5 AA 7 VAL A 63 ASP A 75 -1 O VAL A 63 N LYS A 45 SHEET 6 AA 7 TYR A 80 THR A 87 -1 O TYR A 80 N ASP A 75 SHEET 7 AA 7 TYR A 104 THR A 108 -1 O LEU A 105 N GLY A 85 SHEET 1 AB 5 THR A 162 GLU A 169 0 SHEET 2 AB 5 ILE A 151 VAL A 157 -1 O ALA A 152 N ILE A 168 SHEET 3 AB 5 THR A 142 GLN A 148 -1 O THR A 142 N VAL A 157 SHEET 4 AB 5 THR A 210 SER A 215 1 O THR A 210 N ALA A 143 SHEET 5 AB 5 PHE A 246 HIS A 250 1 O PHE A 247 N LEU A 213 SHEET 1 AC 4 ALA A 298 TYR A 300 0 SHEET 2 AC 4 ILE A 368 LEU A 372 -1 O CYS A 370 N TRP A 299 SHEET 3 AC 4 ILE A 314 THR A 320 -1 N SER A 315 O ILE A 371 SHEET 4 AC 4 LYS A 348 LEU A 352 1 O LYS A 348 N LEU A 317 SHEET 1 BA 7 LYS B 2 LYS B 8 0 SHEET 2 BA 7 ALA B 16 LEU B 21 -1 O VAL B 17 N LYS B 7 SHEET 3 BA 7 PHE B 115 LYS B 119 -1 O PHE B 115 N LEU B 20 SHEET 4 BA 7 GLU B 40 LYS B 45 -1 O GLU B 40 N ILE B 118 SHEET 5 BA 7 VAL B 63 ASP B 75 -1 O VAL B 63 N LYS B 45 SHEET 6 BA 7 TYR B 80 THR B 87 -1 O TYR B 80 N ASP B 75 SHEET 7 BA 7 TYR B 104 THR B 108 -1 O LEU B 105 N GLY B 85 SHEET 1 BB 5 THR B 162 GLU B 169 0 SHEET 2 BB 5 ILE B 151 VAL B 157 -1 O ALA B 152 N ILE B 168 SHEET 3 BB 5 THR B 142 LEU B 147 -1 O THR B 142 N VAL B 157 SHEET 4 BB 5 THR B 210 SER B 215 1 O THR B 210 N ALA B 143 SHEET 5 BB 5 PHE B 246 HIS B 250 1 O PHE B 247 N LEU B 213 SHEET 1 BC 4 ALA B 298 TYR B 300 0 SHEET 2 BC 4 ILE B 368 LEU B 372 -1 O CYS B 370 N TRP B 299 SHEET 3 BC 4 ILE B 314 THR B 320 -1 N SER B 315 O ILE B 371 SHEET 4 BC 4 LYS B 348 LEU B 352 1 O LYS B 348 N LEU B 317 LINK C MSE A 1 N LYS A 2 1555 1555 1.32 LINK C ASP A 75 N MSE A 76 1555 1555 1.33 LINK C MSE A 76 N LYS A 77 1555 1555 1.33 LINK C PHE A 125 N MSE A 126 1555 1555 1.33 LINK C MSE A 126 N GLN A 127 1555 1555 1.33 LINK C ALA A 198 N MSE A 199 1555 1555 1.33 LINK C MSE A 199 N LYS A 200 1555 1555 1.32 LINK C LEU A 223 N MSE A 224 1555 1555 1.33 LINK C MSE A 224 N ASP A 225 1555 1555 1.33 LINK C GLY A 244 N MSE A 245 1555 1555 1.32 LINK C MSE A 245 N PHE A 246 1555 1555 1.33 LINK C ILE A 281 N MSE A 282 1555 1555 1.31 LINK C MSE A 282 N VAL A 283 1555 1555 1.33 LINK C VAL A 283 N MSE A 284 1555 1555 1.34 LINK C MSE A 284 N ASP A 285 1555 1555 1.32 LINK C LEU A 338 N MSE A 339 1555 1555 1.33 LINK C MSE A 339 N ASP A 340 1555 1555 1.34 LINK C MSE B 1 N LYS B 2 1555 1555 1.32 LINK C ASP B 75 N MSE B 76 1555 1555 1.33 LINK C MSE B 76 N LYS B 77 1555 1555 1.34 LINK C PHE B 125 N MSE B 126 1555 1555 1.32 LINK C MSE B 126 N GLN B 127 1555 1555 1.33 LINK C ALA B 198 N MSE B 199 1555 1555 1.32 LINK C MSE B 199 N LYS B 200 1555 1555 1.33 LINK C LEU B 223 N MSE B 224 1555 1555 1.33 LINK C MSE B 224 N ASP B 225 1555 1555 1.34 LINK C GLY B 244 N MSE B 245 1555 1555 1.33 LINK C MSE B 245 N PHE B 246 1555 1555 1.32 LINK C ILE B 281 N MSE B 282 1555 1555 1.32 LINK C MSE B 282 N VAL B 283 1555 1555 1.34 LINK C VAL B 283 N MSE B 284 1555 1555 1.33 LINK C MSE B 284 N ASP B 285 1555 1555 1.33 LINK C LEU B 338 N MSE B 339 1555 1555 1.33 LINK C MSE B 339 N ASP B 340 1555 1555 1.34 SITE 1 AC1 3 GLU B 40 VAL B 88 THR B 89 SITE 1 AC2 7 PHE B 125 LYS B 128 MSE B 339 GLU B 343 SITE 2 AC2 7 ALA B 349 LEU B 350 VAL B 351 SITE 1 AC3 4 LYS B 8 LYS B 293 ASP B 295 LYS B 297 CRYST1 75.640 75.640 324.510 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013221 0.007633 0.000000 0.00000 SCALE2 0.000000 0.015266 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003082 0.00000 HETATM 1 N MSE A 1 -2.347 -20.270 -52.211 1.00 33.68 N HETATM 2 CA MSE A 1 -2.165 -20.178 -53.658 1.00 30.19 C HETATM 3 C MSE A 1 -3.186 -21.036 -54.378 1.00 30.63 C HETATM 4 O MSE A 1 -3.455 -22.164 -53.979 1.00 33.81 O HETATM 5 CB MSE A 1 -0.771 -20.654 -54.058 1.00 29.42 C HETATM 6 CG MSE A 1 -0.468 -20.464 -55.539 1.00 31.40 C HETATM 7 SE MSE A 1 0.101 -18.608 -55.896 1.00 41.11 SE HETATM 8 CE MSE A 1 2.014 -18.819 -55.565 1.00 23.01 C