HEADER IMMUNE SYSTEM/TRANSPORT 15-NOV-07 2VGQ TITLE CRYSTAL STRUCTURE OF HUMAN IPS-1 CARD COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUGAR ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN, COMPND 3 MITOCHONDRIAL ANTIVIRAL-SIGNALING PROTEIN; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: MMBP RESIDUES 27-392, CARD DOMAIN RESIDUES 3-93,MMBP COMPND 6 RESIDUES 27-392, CARD DOMAIN RESIDUES 3-93; COMPND 7 SYNONYM: MAVS,CARD ADAPTER INDUCING INTERFERON BETA,CARDIF,INTERFERON COMPND 8 BETA PROMOTER STIMULATOR PROTEIN 1,IPS-1,PUTATIVE NF-KAPPA-B- COMPND 9 ACTIVATING PROTEIN 031N,VIRUS-INDUCED-SIGNALING ADAPTER,VISA; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: THE CONSTRUCT IS A FUSION OF E. COLI MBP (RESIDUES 2- COMPND 12 366) AND HUMAN IPS-1 CARD (RESIDUES 1 TO 93) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 562, 9606; SOURCE 5 GENE: MALE, PU06_05845, MAVS, IPS1, KIAA1271, VISA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IMMUNE SYSTEM/TRANSPORT, IPS1/MAVS/VISA/CARDIF, CASPASE ACTIVATION, KEYWDS 2 CASPASE RECRUITMENT DOMAIN, INNATE IMMUNITY, FUSION PROTEIN, SUGAR KEYWDS 3 TRANSPORT, TRANSPORT, IMMUNE SYSTEM, CHIMERA, IMMUNE SYSTEM- KEYWDS 4 TRANSPORT COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.A.POTTER,R.E.RANDALL,G.L.TAYLOR REVDAT 4 29-JUL-20 2VGQ 1 COMPND REMARK HET HETNAM REVDAT 4 2 1 FORMUL LINK SITE ATOM REVDAT 3 15-MAR-17 2VGQ 1 SOURCE REVDAT 2 24-FEB-09 2VGQ 1 VERSN REVDAT 1 11-DEC-07 2VGQ 0 JRNL AUTH J.A.POTTER,R.E.RANDALL,G.L.TAYLOR JRNL TITL CRYSTAL STRUCTURE OF HUMAN IPS-1 CASPASE ACTIVATION JRNL TITL 2 RECRUITMENT DOMAIN JRNL REF BMC STRUCT.BIOL. V. 8 11 2008 JRNL REFN ESSN 1472-6807 JRNL PMID 18307765 JRNL DOI 10.1186/1472-6807-8-11 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 45853 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2404 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3349 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 162 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3612 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 203 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.140 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.138 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.449 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3831 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5229 ; 1.507 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 477 ; 5.559 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 175 ;34.058 ;25.257 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 629 ;14.033 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;12.262 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 576 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2904 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1763 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2632 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 225 ; 0.125 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 56 ; 0.222 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.123 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2399 ; 0.868 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3741 ; 1.332 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1677 ; 2.324 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1479 ; 3.430 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VGQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1290034433. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48262 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 32.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.400 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.61000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 49.63000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 49.63000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.80500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 49.63000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 49.63000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 122.41500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 49.63000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.63000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.80500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 49.63000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.63000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 122.41500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.61000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -14 REMARK 465 LYS A -13 REMARK 465 TYR A -12 REMARK 465 TYR A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 ASP A -4 REMARK 465 TYR A -3 REMARK 465 ASP A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 LYS A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 55 -165.65 -102.92 REMARK 500 LEU A 122 74.66 -152.94 REMARK 500 ALA A 168 -86.36 -80.53 REMARK 500 ASP A 209 -168.48 -123.72 REMARK 500 LEU A 400 66.69 -119.94 REMARK 500 LEU A 450 67.78 -105.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MH3 RELATED DB: PDB REMARK 900 MALTOSE BINDING-A1 HOMEODOMAIN PROTEIN CHIMERA , CRYSTALFORM I REMARK 900 RELATED ID: 1HSJ RELATED DB: PDB REMARK 900 SARR MBP FUSION STRUCTURE REMARK 900 RELATED ID: 1Y4C RELATED DB: PDB REMARK 900 DESIGNED HELICAL PROTEIN FUSION MBP REMARK 900 RELATED ID: 1EZO RELATED DB: PDB REMARK 900 GLOBAL FOLD OF MALTODEXTRIN BINDING PROTEIN COMPLEXED WITHBETA- REMARK 900 CYCLODEXTRIN REMARK 900 RELATED ID: 1FQC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MALTOTRIOTOL BOUND TO CLOSED-FORMMALTODEXTRIN REMARK 900 BINDING PROTEIN REMARK 900 RELATED ID: 1ANF RELATED DB: PDB REMARK 900 MALTODEXTRIN BINDING PROTEIN WITH BOUND MALTOSE REMARK 900 RELATED ID: 1LLS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF UNLIGANDED MALTOSE BINDING PROTEINWITH XENON REMARK 900 RELATED ID: 3MBP RELATED DB: PDB REMARK 900 MALTODEXTRIN-BINDING PROTEIN WITH BOUND MALTOTRIOSE REMARK 900 RELATED ID: 1ZKB RELATED DB: PDB REMARK 900 ZINC-FREE ENGINEERED MALTOSE BINDING PROTEIN REMARK 900 RELATED ID: 1MPB RELATED DB: PDB REMARK 900 MALTODEXTRIN-BINDING PROTEIN (MALTOSE-BINDING PROTEIN) 1MPB 3MUTANT, REMARK 900 WITH ARGININE REPLACING TRYPTOPHAN AT POSITION 230 1MPB 4(TRP- 230- REMARK 900 ARG), COMPLEXED WITH MALTOSE 1MPB 5 REMARK 900 RELATED ID: 1DMB RELATED DB: PDB REMARK 900 RELATED ID: 1EZP RELATED DB: PDB REMARK 900 GLOBAL FOLD OF MALTODEXTRIN BINDING PROTEIN COMPLEXED WITHBETA- REMARK 900 CYCLODEXTRIN USING PEPTIDE ORIENTATIONS FROM DIPOLARCOUPLINGS REMARK 900 RELATED ID: 1EZ9 RELATED DB: PDB REMARK 900 STRUCTURE OF MALTOTETRAITOL BOUND TO OPEN- FORM MALTODEXTRINBINDING REMARK 900 PROTEIN IN P1 CRYSTAL FORM REMARK 900 RELATED ID: 1ZJL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ZINC-BOUND ENGINEERED MALTOSE BINDINGPROTEIN REMARK 900 RELATED ID: 2H25 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF MALTOSE BINDING PROTEIN COMPLEXEDWITH BETA- REMARK 900 CYCLODEXTRIN REMARK 900 RELATED ID: 1JVX RELATED DB: PDB REMARK 900 MALTODEXTRIN-BINDING PROTEIN VARIANT D207C/ A301GS/P316CCROSS- REMARK 900 LINKED IN CRYSTAL REMARK 900 RELATED ID: 1N3X RELATED DB: PDB REMARK 900 LIGAND-FREE HIGH-AFFINITY MALTOSE-BINDING PROTEIN REMARK 900 RELATED ID: 1NL5 RELATED DB: PDB REMARK 900 ENGINEERED HIGH-AFFINITY MALTOSE-BINDING PROTEIN REMARK 900 RELATED ID: 1A7L RELATED DB: PDB REMARK 900 DOMINANT B-CELL EPITOPE FROM THE PRES2 REGION OF HEPATITISB VIRUS REMARK 900 IN THE FORM OF AN INSERTED PEPTIDE SEGMENT INMALTODEXTRIN- BINDING REMARK 900 PROTEIN REMARK 900 RELATED ID: 1R6Z RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF THE ARGONAUTE2 PAZ DOMAIN (AS AMBP FUSION) REMARK 900 RELATED ID: 1ZMG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF COPPER-BOUND ENGINEERED MALTOSEBINDING PROTEIN REMARK 900 RELATED ID: 1T0K RELATED DB: PDB REMARK 900 JOINT X-RAY AND NMR REFINEMENT OF YEAST L30E-MRNA COMPLEX REMARK 900 RELATED ID: 1MH4 RELATED DB: PDB REMARK 900 MALTOSE BINDING-A1 HOMEODOMAIN PROTEIN CHIMERA , CRYSTALFORM II REMARK 900 RELATED ID: 1JW5 RELATED DB: PDB REMARK 900 STRUCTURE OF MALTOSE BOUND TO OPEN-FORM MALTODEXTRIN-BINDING REMARK 900 PROTEIN IN P1 CRYSTAL REMARK 900 RELATED ID: 1FQA RELATED DB: PDB REMARK 900 STRUCTURE OF MALTOTETRAITOL BOUND TO OPEN- FORM MALTODEXTRINBINDING REMARK 900 PROTEIN IN P2(1) CRYSTAL FORM REMARK 900 RELATED ID: 1IUD RELATED DB: PDB REMARK 900 MALTODEXTRIN-BINDING PROTEIN INSERTION/DELETION MUTANTWITH AN REMARK 900 INSERTED B-CELL EPITOPE FROM THE PRES2 REGIONOF HEPATITIS B VIRUS REMARK 900 RELATED ID: 1ZIU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NICKEL-BOUND ENGINEERED MALTOSEBINDING PROTEIN REMARK 900 RELATED ID: 1MG1 RELATED DB: PDB REMARK 900 HTLV-1 GP21 ECTODOMAIN/MALTOSE-BINDING PROTEIN CHIMERA REMARK 900 RELATED ID: 1MDP RELATED DB: PDB REMARK 900 RELATED ID: 1FQB RELATED DB: PDB REMARK 900 STRUCTURE OF MALTOTRIOTOL BOUND TO OPEN-FORM MALTODEXTRINBINDING REMARK 900 PROTEIN IN P2(1)CRYSTAL FORM REMARK 900 RELATED ID: 1JW4 RELATED DB: PDB REMARK 900 STRUCTURE OF LIGAND-FREE MALTODEXTRIN-BINDING PROTEIN REMARK 900 RELATED ID: 1OMP RELATED DB: PDB REMARK 900 RELATED ID: 1N3W RELATED DB: PDB REMARK 900 ENGINEERED HIGH-AFFINITY MALTOSE-BINDING PROTEIN REMARK 900 RELATED ID: 1NMU RELATED DB: PDB REMARK 900 MBP-L30 REMARK 900 RELATED ID: 1MPD RELATED DB: PDB REMARK 900 MALTODEXTRIN-BINDING PROTEIN (MALTOSE-BINDING PROTEIN) 1MPD 3MUTANT, REMARK 900 WITH ARGININE REPLACING TRYPTOPHAN AT POSITION 230 1MPD 4(TRP- 230- REMARK 900 ARG), COMPLEXED WITH MALTOSE 1MPD 5 REMARK 900 RELATED ID: 1YTV RELATED DB: PDB REMARK 900 MALTOSE-BINDING PROTEIN FUSION TO A C- TERMINAL FRAGMENT OFTHE V1A REMARK 900 VASOPRESSIN RECEPTOR REMARK 900 RELATED ID: 1MDQ RELATED DB: PDB REMARK 900 RELATED ID: 1LAX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MALE31, A DEFECTIVE FOLDING MUTANT OFMALTOSE- REMARK 900 BINDING PROTEIN REMARK 900 RELATED ID: 1PEB RELATED DB: PDB REMARK 900 LIGAND-FREE HIGH-AFFINITY MALTOSE-BINDING PROTEIN REMARK 900 RELATED ID: 1MPC RELATED DB: PDB REMARK 900 MALTODEXTRIN-BINDING PROTEIN (MALTOSE-BINDING PROTEIN) 1MPC 3MUTANT, REMARK 900 WITH ARGININE REPLACING TRYPTOPHAN AT POSITION 230 1MPC 4(TRP- 230- REMARK 900 ARG), COMPLEXED WITH MALTOSE 1MPC 5 REMARK 900 RELATED ID: 1JVY RELATED DB: PDB REMARK 900 MALTODEXTRIN-BINDING PROTEIN VARIANT D207C/ A301GS/P316CWITH BETA- REMARK 900 MERCAPTOETHANOL MIXED DISULFIDES REMARK 900 RELATED ID: 1FQD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MALTOTETRAITOL BOUND TO CLOSED- REMARK 900 FORMMALTODEXTRIN BINDING PROTEIN REMARK 900 RELATED ID: 1SVX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A DESIGNED SELECTED ANKYRIN REPEATPROTEIN IN REMARK 900 COMPLEX WITH THE MALTOSE BINDING PROTEIN REMARK 900 RELATED ID: 2D21 RELATED DB: PDB REMARK 900 NMR STRUCTURE OF STEREO-ARRAY ISOTOPE LABELLED (SAIL)MALTODEXTRIN- REMARK 900 BINDING PROTEIN ( MBP) DBREF1 2VGQ A 1 362 UNP A0A0B1N7A9_ECOLX DBREF2 2VGQ A A0A0B1N7A9 27 388 DBREF 2VGQ A 370 462 UNP Q7Z434 MAVS_HUMAN 1 93 SEQADV 2VGQ MET A -14 UNP A0A0B1N7A INITIATING METHIONINE SEQADV 2VGQ LYS A -13 UNP A0A0B1N7A EXPRESSION TAG SEQADV 2VGQ TYR A -12 UNP A0A0B1N7A EXPRESSION TAG SEQADV 2VGQ TYR A -11 UNP A0A0B1N7A EXPRESSION TAG SEQADV 2VGQ HIS A -10 UNP A0A0B1N7A EXPRESSION TAG SEQADV 2VGQ HIS A -9 UNP A0A0B1N7A EXPRESSION TAG SEQADV 2VGQ HIS A -8 UNP A0A0B1N7A EXPRESSION TAG SEQADV 2VGQ HIS A -7 UNP A0A0B1N7A EXPRESSION TAG SEQADV 2VGQ HIS A -6 UNP A0A0B1N7A EXPRESSION TAG SEQADV 2VGQ HIS A -5 UNP A0A0B1N7A EXPRESSION TAG SEQADV 2VGQ ASP A -4 UNP A0A0B1N7A EXPRESSION TAG SEQADV 2VGQ TYR A -3 UNP A0A0B1N7A EXPRESSION TAG SEQADV 2VGQ ASP A -2 UNP A0A0B1N7A EXPRESSION TAG SEQADV 2VGQ HIS A -1 UNP A0A0B1N7A EXPRESSION TAG SEQADV 2VGQ MET A 0 UNP A0A0B1N7A EXPRESSION TAG SEQADV 2VGQ ASP A 363 UNP A0A0B1N7A LINKER SEQADV 2VGQ ALA A 364 UNP A0A0B1N7A LINKER SEQADV 2VGQ GLN A 365 UNP A0A0B1N7A LINKER SEQADV 2VGQ THR A 366 UNP A0A0B1N7A LINKER SEQADV 2VGQ ASN A 367 UNP A0A0B1N7A LINKER SEQADV 2VGQ SER A 368 UNP A0A0B1N7A LINKER SEQADV 2VGQ ALA A 369 UNP A0A0B1N7A LINKER SEQADV 2VGQ MET A 370 UNP Q7Z434 MET 1 LINKER SEQADV 2VGQ ALA A 371 UNP Q7Z434 PRO 2 LINKER SEQRES 1 A 477 MET LYS TYR TYR HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 A 477 HIS MET LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP ILE SEQRES 3 A 477 ASN GLY ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY SEQRES 4 A 477 LYS LYS PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL SEQRES 5 A 477 GLU HIS PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL SEQRES 6 A 477 ALA ALA THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA SEQRES 7 A 477 HIS ASP ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU SEQRES 8 A 477 ALA GLU ILE THR PRO ASP LYS ALA PHE GLN ASP LYS LEU SEQRES 9 A 477 TYR PRO PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS SEQRES 10 A 477 LEU ILE ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU SEQRES 11 A 477 ILE TYR ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR SEQRES 12 A 477 TRP GLU GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA SEQRES 13 A 477 LYS GLY LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO SEQRES 14 A 477 TYR PHE THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR SEQRES 15 A 477 ALA PHE LYS TYR GLU ASN GLY LYS TYR ASP ILE LYS ASP SEQRES 16 A 477 VAL GLY VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR SEQRES 17 A 477 PHE LEU VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA SEQRES 18 A 477 ASP THR ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS SEQRES 19 A 477 GLY GLU THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SEQRES 20 A 477 SER ASN ILE ASP THR SER LYS VAL ASN TYR GLY VAL THR SEQRES 21 A 477 VAL LEU PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE SEQRES 22 A 477 VAL GLY VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO SEQRES 23 A 477 ASN LYS GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU SEQRES 24 A 477 LEU THR ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS SEQRES 25 A 477 PRO LEU GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU SEQRES 26 A 477 LEU ALA LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN SEQRES 27 A 477 ALA GLN LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SEQRES 28 A 477 SER ALA PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN SEQRES 29 A 477 ALA ALA SER GLY ARG GLN THR VAL ASP GLU ALA LEU LYS SEQRES 30 A 477 ASP ALA GLN THR ASN SER ALA MET ALA PHE ALA GLU ASP SEQRES 31 A 477 LYS THR TYR LYS TYR ILE CYS ARG ASN PHE SER ASN PHE SEQRES 32 A 477 CYS ASN VAL ASP VAL VAL GLU ILE LEU PRO TYR LEU PRO SEQRES 33 A 477 CYS LEU THR ALA ARG ASP GLN ASP ARG LEU ARG ALA THR SEQRES 34 A 477 CYS THR LEU SER GLY ASN ARG ASP THR LEU TRP HIS LEU SEQRES 35 A 477 PHE ASN THR LEU GLN ARG ARG PRO GLY TRP VAL GLU TYR SEQRES 36 A 477 PHE ILE ALA ALA LEU ARG GLY CYS GLU LEU VAL ASP LEU SEQRES 37 A 477 ALA ASP GLU VAL ALA SER VAL TYR GLN HET GLC B 1 12 HET GLC B 2 11 HET GLC B 3 11 HET GLC B 4 11 HET SO4 A1464 5 HET SO4 A1465 5 HET SO4 A1466 5 HET SO4 A1467 5 HET SO4 A1468 5 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION FORMUL 2 GLC 4(C6 H12 O6) FORMUL 3 SO4 5(O4 S 2-) FORMUL 8 HOH *203(H2 O) HELIX 1 1 GLY A 16 GLY A 32 1 17 HELIX 2 2 LYS A 42 ALA A 52 1 11 HELIX 3 3 ARG A 66 SER A 73 1 8 HELIX 4 4 ASP A 82 ASP A 87 1 6 HELIX 5 5 TYR A 90 VAL A 97 1 8 HELIX 6 6 GLU A 131 LYS A 142 1 12 HELIX 7 7 GLU A 153 ASP A 164 1 12 HELIX 8 8 ASN A 185 ASN A 201 1 17 HELIX 9 9 ASP A 209 LYS A 219 1 11 HELIX 10 10 GLY A 228 TRP A 230 5 3 HELIX 11 11 ALA A 231 LYS A 239 1 9 HELIX 12 12 ASN A 272 TYR A 283 1 12 HELIX 13 13 THR A 286 LYS A 297 1 12 HELIX 14 14 LEU A 304 ALA A 312 1 9 HELIX 15 15 ASP A 314 GLY A 327 1 14 HELIX 16 16 GLN A 335 SER A 352 1 18 HELIX 17 17 THR A 356 ASN A 384 1 29 HELIX 18 18 PHE A 385 CYS A 389 5 5 HELIX 19 19 ASP A 392 LEU A 397 1 6 HELIX 20 20 PRO A 398 LEU A 400 5 3 HELIX 21 21 THR A 404 GLY A 419 1 16 HELIX 22 22 GLY A 419 GLN A 432 1 14 HELIX 23 23 GLY A 436 CYS A 448 1 13 HELIX 24 24 LEU A 450 GLN A 462 1 13 SHEET 1 AA 6 VAL A 35 GLU A 38 0 SHEET 2 AA 6 LEU A 7 TRP A 10 1 O LEU A 7 N THR A 36 SHEET 3 AA 6 ILE A 59 ALA A 63 1 O ILE A 59 N TRP A 10 SHEET 4 AA 6 PHE A 258 ILE A 266 -1 O SER A 263 N TRP A 62 SHEET 5 AA 6 TYR A 106 GLU A 111 -1 O TYR A 106 N ALA A 264 SHEET 6 AA 6 ALA A 301 VAL A 302 -1 O ALA A 301 N VAL A 110 SHEET 1 AB 5 VAL A 35 GLU A 38 0 SHEET 2 AB 5 LEU A 7 TRP A 10 1 O LEU A 7 N THR A 36 SHEET 3 AB 5 ILE A 59 ALA A 63 1 O ILE A 59 N TRP A 10 SHEET 4 AB 5 PHE A 258 ILE A 266 -1 O SER A 263 N TRP A 62 SHEET 5 AB 5 GLU A 328 ILE A 329 1 O GLU A 328 N VAL A 259 SHEET 1 AC 2 ARG A 98 TYR A 99 0 SHEET 2 AC 2 LYS A 102 LEU A 103 -1 O LYS A 102 N TYR A 99 SHEET 1 AD 4 SER A 145 LEU A 147 0 SHEET 2 AD 4 THR A 222 ASN A 227 1 N ALA A 223 O SER A 145 SHEET 3 AD 4 SER A 114 ASN A 118 -1 O SER A 114 N ASN A 227 SHEET 4 AD 4 TYR A 242 THR A 245 -1 O GLY A 243 N TYR A 117 SHEET 1 AE 2 TYR A 167 GLU A 172 0 SHEET 2 AE 2 LYS A 175 GLY A 182 -1 O LYS A 175 N GLU A 172 LINK O4 GLC B 1 C1 GLC B 2 1555 1555 1.43 LINK O4 GLC B 2 C1 GLC B 3 1555 1555 1.44 LINK O4 GLC B 3 C1 GLC B 4 1555 1555 1.46 CRYST1 99.260 99.260 163.220 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010075 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010075 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006127 0.00000