data_2VGY # _entry.id 2VGY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2VGY pdb_00002vgy 10.2210/pdb2vgy/pdb PDBE EBI-34443 ? ? WWPDB D_1290034443 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2VGX _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'STRUCTURE OF THE YERSINIA ENTEROCOLITICA TYPE III SECRETION TRANSLOCATOR CHAPERONE SYCD' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2VGY _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2007-11-16 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Buttner, C.R.' 1 'Sorg, I.' 2 'Cornelis, G.R.' 3 'Heinz, D.W.' 4 'Niemann, H.H.' 5 # _citation.id primary _citation.title 'Structure of the Yersinia Enterocolitica Type III Secretion Chaperone Sycd' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 375 _citation.page_first 997 _citation.page_last ? _citation.year 2008 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18054956 _citation.pdbx_database_id_DOI 10.1016/J.JMB.2007.11.009 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Buttner, C.R.' 1 ? primary 'Sorg, I.' 2 ? primary 'Cornelis, G.R.' 3 ? primary 'Heinz, D.W.' 4 ? primary 'Niemann, H.H.' 5 ? # _cell.entry_id 2VGY _cell.length_a 90.638 _cell.length_b 90.638 _cell.length_c 54.205 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VGY _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CHAPERONE SYCD' 16744.148 1 ? YES 'RESIDUES 21-163' ? 2 water nat water 18.015 28 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSG(MLY)YEDAH(MLY)VFQALCVLDHYDSRFFLGLGACRQAMGQYD LAIHSYEEGAVMDI(MLY)EPRFPFHAAECLLQ(MLY)GELAEAESGLFLAQELIAN(MLY)PEF(MLY)ELSTRVSSML EAI(MLY)L(MLY)(MLY)EMKHE ; _entity_poly.pdbx_seq_one_letter_code_can ;GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYEE GAVMDIKEPRFPFHAAECLLQKGELAEAESGLFLAQELIANKPEFKELSTRVSSMLEAIKLKKEMKHE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 GLY n 1 7 GLY n 1 8 GLY n 1 9 THR n 1 10 ILE n 1 11 ALA n 1 12 MET n 1 13 LEU n 1 14 ASN n 1 15 GLU n 1 16 ILE n 1 17 SER n 1 18 SER n 1 19 ASP n 1 20 THR n 1 21 LEU n 1 22 GLU n 1 23 GLN n 1 24 LEU n 1 25 TYR n 1 26 SER n 1 27 LEU n 1 28 ALA n 1 29 PHE n 1 30 ASN n 1 31 GLN n 1 32 TYR n 1 33 GLN n 1 34 SER n 1 35 GLY n 1 36 MLY n 1 37 TYR n 1 38 GLU n 1 39 ASP n 1 40 ALA n 1 41 HIS n 1 42 MLY n 1 43 VAL n 1 44 PHE n 1 45 GLN n 1 46 ALA n 1 47 LEU n 1 48 CYS n 1 49 VAL n 1 50 LEU n 1 51 ASP n 1 52 HIS n 1 53 TYR n 1 54 ASP n 1 55 SER n 1 56 ARG n 1 57 PHE n 1 58 PHE n 1 59 LEU n 1 60 GLY n 1 61 LEU n 1 62 GLY n 1 63 ALA n 1 64 CYS n 1 65 ARG n 1 66 GLN n 1 67 ALA n 1 68 MET n 1 69 GLY n 1 70 GLN n 1 71 TYR n 1 72 ASP n 1 73 LEU n 1 74 ALA n 1 75 ILE n 1 76 HIS n 1 77 SER n 1 78 TYR n 1 79 GLU n 1 80 GLU n 1 81 GLY n 1 82 ALA n 1 83 VAL n 1 84 MET n 1 85 ASP n 1 86 ILE n 1 87 MLY n 1 88 GLU n 1 89 PRO n 1 90 ARG n 1 91 PHE n 1 92 PRO n 1 93 PHE n 1 94 HIS n 1 95 ALA n 1 96 ALA n 1 97 GLU n 1 98 CYS n 1 99 LEU n 1 100 LEU n 1 101 GLN n 1 102 MLY n 1 103 GLY n 1 104 GLU n 1 105 LEU n 1 106 ALA n 1 107 GLU n 1 108 ALA n 1 109 GLU n 1 110 SER n 1 111 GLY n 1 112 LEU n 1 113 PHE n 1 114 LEU n 1 115 ALA n 1 116 GLN n 1 117 GLU n 1 118 LEU n 1 119 ILE n 1 120 ALA n 1 121 ASN n 1 122 MLY n 1 123 PRO n 1 124 GLU n 1 125 PHE n 1 126 MLY n 1 127 GLU n 1 128 LEU n 1 129 SER n 1 130 THR n 1 131 ARG n 1 132 VAL n 1 133 SER n 1 134 SER n 1 135 MET n 1 136 LEU n 1 137 GLU n 1 138 ALA n 1 139 ILE n 1 140 MLY n 1 141 LEU n 1 142 MLY n 1 143 MLY n 1 144 GLU n 1 145 MET n 1 146 LYS n 1 147 HIS n 1 148 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'YERSINIA ENTEROCOLITICA' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 630 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'YERSINIA ENTEROCOLITICA VIRULENCE PLASMID PYVE227 FROM STRAIN W22703' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2VGY 1 ? ? 2VGY ? 2 UNP O87496_YEREN 1 ? ? O87496 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2VGY A 1 ? 5 ? 2VGY -5 ? -1 ? -5 -1 2 2 2VGY A 6 ? 148 ? O87496 21 ? 163 ? 21 163 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2VGY GLU A 79 ? UNP O87496 SER 94 'engineered mutation' 94 1 1 2VGY GLU A 80 ? UNP O87496 TYR 95 'engineered mutation' 95 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MLY 'L-peptide linking' n N-DIMETHYL-LYSINE ? 'C8 H18 N2 O2' 174.241 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2VGY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.92 _exptl_crystal.density_percent_sol 68 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '40% PEG400, 5% PEG3350, 0.1M SODIUM ACTATE PH 5.5 AT 4 DEGREES CELSIUS' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2007-08-30 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.934 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-1 _diffrn_source.pdbx_wavelength 0.934 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2VGY _reflns.observed_criterion_sigma_I 3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 39.20 _reflns.d_resolution_high 2.60 _reflns.number_obs 8163 _reflns.number_all ? _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.12 _reflns.pdbx_Rsym_value 0.11 _reflns.pdbx_netI_over_sigmaI 20.00 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.2 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.60 _reflns_shell.d_res_low 2.70 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.60 _reflns_shell.pdbx_Rsym_value 0.56 _reflns_shell.meanI_over_sigI_obs 3.70 _reflns_shell.pdbx_redundancy 7.3 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2VGY _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 8120 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 39.2474 _refine.ls_d_res_high 2.60 _refine.ls_percent_reflns_obs 99.42 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2134 _refine.ls_R_factor_R_free 0.2343 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 407 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;TLS REFINEMENT CARRIED OUT IN PHENIX. ANISOU RECORDS CONTAIN THE ANISOTROPIC B-FACTOR THAT IS THE TOTAL B-FACTOR (B_TLS + B_INDIVIDUAL). ATOM RECORDS CONTAINISOTROPIC EQUIVALENTS OF THE TOTAL B-FACTOR THAT IS THE MEAN OF THE ANISOU MATRIX TRACE DIVIDED BY 10000 AND MULTIPLIED BY 8*PI^2. INDIVIDUAL B-FACTORS ARE OBTAINED BY SUBTRACTING THE TLS COMPONENT (B_TLS), CALCULATED BY THE TLS RECORDS FROM THE PDB FILE HEADER, FROM THE TOTAL B-FACTORS (ANISOU RECORDS). ; _refine.pdbx_starting_model 'PDB ENTRY 2VGX' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1069 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 28 _refine_hist.number_atoms_total 1097 _refine_hist.d_res_high 2.60 _refine_hist.d_res_low 39.2474 # _struct.entry_id 2VGY _struct.title 'Crystal structure of the Yersinia enterocolitica Type III Secretion Translocator Chaperone SycD (alternative dimer)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2VGY _struct_keywords.pdbx_keywords CHAPERONE _struct_keywords.text 'ALTERNATIVE DIMER ASSEMBLY, CHAPERONE, SYCD, TETRATRICOPEPTIDE REPEAT, TYPE III SECRETION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ;ACCORDING TO THE AUTHOR THE BIOLOGICAL UNIT IS A HOMODIMER, WHERE MONOMERS ARE RELATED BY TWO-FOLD CRYSTALLOGRAPHIC ROTATIONAL SYMMETRY (ALTERNATIVE DIMER ASSEMBLY = DIMER 3) ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 20 ? SER A 34 ? THR A 35 SER A 49 1 ? 15 HELX_P HELX_P2 2 TYR A 37 ? LEU A 50 ? TYR A 52 LEU A 65 1 ? 14 HELX_P HELX_P3 3 SER A 55 ? MET A 68 ? SER A 70 MET A 83 1 ? 14 HELX_P HELX_P4 4 TYR A 71 ? MET A 84 ? TYR A 86 MET A 99 1 ? 14 HELX_P HELX_P5 5 PRO A 89 ? MLY A 102 ? PRO A 104 MLY A 117 1 ? 14 HELX_P HELX_P6 6 LEU A 105 ? ILE A 119 ? LEU A 120 ILE A 134 1 ? 15 HELX_P HELX_P7 7 MLY A 126 ? MLY A 143 ? MLY A 141 MLY A 158 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 35 C ? ? ? 1_555 A MLY 36 N ? ? A GLY 50 A MLY 51 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale2 covale both ? A MLY 36 C ? ? ? 1_555 A TYR 37 N ? ? A MLY 51 A TYR 52 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale3 covale both ? A HIS 41 C ? ? ? 1_555 A MLY 42 N ? ? A HIS 56 A MLY 57 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale4 covale both ? A MLY 42 C ? ? ? 1_555 A VAL 43 N ? ? A MLY 57 A VAL 58 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? A ILE 86 C ? ? ? 1_555 A MLY 87 N ? ? A ILE 101 A MLY 102 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale6 covale both ? A MLY 87 C ? ? ? 1_555 A GLU 88 N ? ? A MLY 102 A GLU 103 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale7 covale both ? A GLN 101 C ? ? ? 1_555 A MLY 102 N ? ? A GLN 116 A MLY 117 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale8 covale both ? A MLY 102 C ? ? ? 1_555 A GLY 103 N ? ? A MLY 117 A GLY 118 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale9 covale both ? A ASN 121 C ? ? ? 1_555 A MLY 122 N ? ? A ASN 136 A MLY 137 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale10 covale both ? A MLY 122 C ? ? ? 1_555 A PRO 123 N ? ? A MLY 137 A PRO 138 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale11 covale both ? A PHE 125 C ? ? ? 1_555 A MLY 126 N ? ? A PHE 140 A MLY 141 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale12 covale both ? A MLY 126 C ? ? ? 1_555 A GLU 127 N ? ? A MLY 141 A GLU 142 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale13 covale both ? A ILE 139 C ? ? ? 1_555 A MLY 140 N ? ? A ILE 154 A MLY 155 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale14 covale both ? A MLY 140 C ? ? ? 1_555 A LEU 141 N ? ? A MLY 155 A LEU 156 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale15 covale both ? A LEU 141 C ? ? ? 1_555 A MLY 142 N ? ? A LEU 156 A MLY 157 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale16 covale both ? A MLY 142 C ? ? ? 1_555 A MLY 143 N ? ? A MLY 157 A MLY 158 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale17 covale both ? A MLY 143 C ? ? ? 1_555 A GLU 144 N ? ? A MLY 158 A GLU 159 1_555 ? ? ? ? ? ? ? 1.330 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 2VGY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2VGY _atom_sites.fract_transf_matrix[1][1] 0.011033 _atom_sites.fract_transf_matrix[1][2] 0.006370 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012740 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018448 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -5 ? ? ? A . n A 1 2 PRO 2 -4 ? ? ? A . n A 1 3 LEU 3 -3 ? ? ? A . n A 1 4 GLY 4 -2 ? ? ? A . n A 1 5 SER 5 -1 ? ? ? A . n A 1 6 GLY 6 21 ? ? ? A . n A 1 7 GLY 7 22 ? ? ? A . n A 1 8 GLY 8 23 ? ? ? A . n A 1 9 THR 9 24 ? ? ? A . n A 1 10 ILE 10 25 ? ? ? A . n A 1 11 ALA 11 26 ? ? ? A . n A 1 12 MET 12 27 ? ? ? A . n A 1 13 LEU 13 28 ? ? ? A . n A 1 14 ASN 14 29 29 ASN ASN A . n A 1 15 GLU 15 30 30 GLU GLU A . n A 1 16 ILE 16 31 31 ILE ILE A . n A 1 17 SER 17 32 32 SER SER A . n A 1 18 SER 18 33 33 SER SER A . n A 1 19 ASP 19 34 34 ASP ASP A . n A 1 20 THR 20 35 35 THR THR A . n A 1 21 LEU 21 36 36 LEU LEU A . n A 1 22 GLU 22 37 37 GLU GLU A . n A 1 23 GLN 23 38 38 GLN GLN A . n A 1 24 LEU 24 39 39 LEU LEU A . n A 1 25 TYR 25 40 40 TYR TYR A . n A 1 26 SER 26 41 41 SER SER A . n A 1 27 LEU 27 42 42 LEU LEU A . n A 1 28 ALA 28 43 43 ALA ALA A . n A 1 29 PHE 29 44 44 PHE PHE A . n A 1 30 ASN 30 45 45 ASN ASN A . n A 1 31 GLN 31 46 46 GLN GLN A . n A 1 32 TYR 32 47 47 TYR TYR A . n A 1 33 GLN 33 48 48 GLN GLN A . n A 1 34 SER 34 49 49 SER SER A . n A 1 35 GLY 35 50 50 GLY GLY A . n A 1 36 MLY 36 51 51 MLY MLY A . n A 1 37 TYR 37 52 52 TYR TYR A . n A 1 38 GLU 38 53 53 GLU GLU A . n A 1 39 ASP 39 54 54 ASP ASP A . n A 1 40 ALA 40 55 55 ALA ALA A . n A 1 41 HIS 41 56 56 HIS HIS A . n A 1 42 MLY 42 57 57 MLY MLY A . n A 1 43 VAL 43 58 58 VAL VAL A . n A 1 44 PHE 44 59 59 PHE PHE A . n A 1 45 GLN 45 60 60 GLN GLN A . n A 1 46 ALA 46 61 61 ALA ALA A . n A 1 47 LEU 47 62 62 LEU LEU A . n A 1 48 CYS 48 63 63 CYS CYS A . n A 1 49 VAL 49 64 64 VAL VAL A . n A 1 50 LEU 50 65 65 LEU LEU A . n A 1 51 ASP 51 66 66 ASP ASP A . n A 1 52 HIS 52 67 67 HIS HIS A . n A 1 53 TYR 53 68 68 TYR TYR A . n A 1 54 ASP 54 69 69 ASP ASP A . n A 1 55 SER 55 70 70 SER SER A . n A 1 56 ARG 56 71 71 ARG ARG A . n A 1 57 PHE 57 72 72 PHE PHE A . n A 1 58 PHE 58 73 73 PHE PHE A . n A 1 59 LEU 59 74 74 LEU LEU A . n A 1 60 GLY 60 75 75 GLY GLY A . n A 1 61 LEU 61 76 76 LEU LEU A . n A 1 62 GLY 62 77 77 GLY GLY A . n A 1 63 ALA 63 78 78 ALA ALA A . n A 1 64 CYS 64 79 79 CYS CYS A . n A 1 65 ARG 65 80 80 ARG ARG A . n A 1 66 GLN 66 81 81 GLN GLN A . n A 1 67 ALA 67 82 82 ALA ALA A . n A 1 68 MET 68 83 83 MET MET A . n A 1 69 GLY 69 84 84 GLY GLY A . n A 1 70 GLN 70 85 85 GLN GLN A . n A 1 71 TYR 71 86 86 TYR TYR A . n A 1 72 ASP 72 87 87 ASP ASP A . n A 1 73 LEU 73 88 88 LEU LEU A . n A 1 74 ALA 74 89 89 ALA ALA A . n A 1 75 ILE 75 90 90 ILE ILE A . n A 1 76 HIS 76 91 91 HIS HIS A . n A 1 77 SER 77 92 92 SER SER A . n A 1 78 TYR 78 93 93 TYR TYR A . n A 1 79 GLU 79 94 94 GLU GLU A . n A 1 80 GLU 80 95 95 GLU GLU A . n A 1 81 GLY 81 96 96 GLY GLY A . n A 1 82 ALA 82 97 97 ALA ALA A . n A 1 83 VAL 83 98 98 VAL VAL A . n A 1 84 MET 84 99 99 MET MET A . n A 1 85 ASP 85 100 100 ASP ASP A . n A 1 86 ILE 86 101 101 ILE ILE A . n A 1 87 MLY 87 102 102 MLY MLY A . n A 1 88 GLU 88 103 103 GLU GLU A . n A 1 89 PRO 89 104 104 PRO PRO A . n A 1 90 ARG 90 105 105 ARG ARG A . n A 1 91 PHE 91 106 106 PHE PHE A . n A 1 92 PRO 92 107 107 PRO PRO A . n A 1 93 PHE 93 108 108 PHE PHE A . n A 1 94 HIS 94 109 109 HIS HIS A . n A 1 95 ALA 95 110 110 ALA ALA A . n A 1 96 ALA 96 111 111 ALA ALA A . n A 1 97 GLU 97 112 112 GLU GLU A . n A 1 98 CYS 98 113 113 CYS CYS A . n A 1 99 LEU 99 114 114 LEU LEU A . n A 1 100 LEU 100 115 115 LEU LEU A . n A 1 101 GLN 101 116 116 GLN GLN A . n A 1 102 MLY 102 117 117 MLY MLY A . n A 1 103 GLY 103 118 118 GLY GLY A . n A 1 104 GLU 104 119 119 GLU GLU A . n A 1 105 LEU 105 120 120 LEU LEU A . n A 1 106 ALA 106 121 121 ALA ALA A . n A 1 107 GLU 107 122 122 GLU GLU A . n A 1 108 ALA 108 123 123 ALA ALA A . n A 1 109 GLU 109 124 124 GLU GLU A . n A 1 110 SER 110 125 125 SER SER A . n A 1 111 GLY 111 126 126 GLY GLY A . n A 1 112 LEU 112 127 127 LEU LEU A . n A 1 113 PHE 113 128 128 PHE PHE A . n A 1 114 LEU 114 129 129 LEU LEU A . n A 1 115 ALA 115 130 130 ALA ALA A . n A 1 116 GLN 116 131 131 GLN GLN A . n A 1 117 GLU 117 132 132 GLU GLU A . n A 1 118 LEU 118 133 133 LEU LEU A . n A 1 119 ILE 119 134 134 ILE ILE A . n A 1 120 ALA 120 135 135 ALA ALA A . n A 1 121 ASN 121 136 136 ASN ASN A . n A 1 122 MLY 122 137 137 MLY MLY A . n A 1 123 PRO 123 138 138 PRO PRO A . n A 1 124 GLU 124 139 139 GLU GLU A . n A 1 125 PHE 125 140 140 PHE PHE A . n A 1 126 MLY 126 141 141 MLY MLY A . n A 1 127 GLU 127 142 142 GLU GLU A . n A 1 128 LEU 128 143 143 LEU LEU A . n A 1 129 SER 129 144 144 SER SER A . n A 1 130 THR 130 145 145 THR THR A . n A 1 131 ARG 131 146 146 ARG ARG A . n A 1 132 VAL 132 147 147 VAL VAL A . n A 1 133 SER 133 148 148 SER SER A . n A 1 134 SER 134 149 149 SER SER A . n A 1 135 MET 135 150 150 MET MET A . n A 1 136 LEU 136 151 151 LEU LEU A . n A 1 137 GLU 137 152 152 GLU GLU A . n A 1 138 ALA 138 153 153 ALA ALA A . n A 1 139 ILE 139 154 154 ILE ILE A . n A 1 140 MLY 140 155 155 MLY MLY A . n A 1 141 LEU 141 156 156 LEU LEU A . n A 1 142 MLY 142 157 157 MLY MLY A . n A 1 143 MLY 143 158 158 MLY MLY A . n A 1 144 GLU 144 159 159 GLU GLU A . n A 1 145 MET 145 160 160 MET MET A . n A 1 146 LYS 146 161 ? ? ? A . n A 1 147 HIS 147 162 ? ? ? A . n A 1 148 GLU 148 163 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 2001 2001 HOH HOH A . B 2 HOH 2 2002 2002 HOH HOH A . B 2 HOH 3 2003 2003 HOH HOH A . B 2 HOH 4 2004 2004 HOH HOH A . B 2 HOH 5 2005 2005 HOH HOH A . B 2 HOH 6 2006 2006 HOH HOH A . B 2 HOH 7 2007 2007 HOH HOH A . B 2 HOH 8 2008 2008 HOH HOH A . B 2 HOH 9 2009 2009 HOH HOH A . B 2 HOH 10 2010 2010 HOH HOH A . B 2 HOH 11 2011 2011 HOH HOH A . B 2 HOH 12 2012 2012 HOH HOH A . B 2 HOH 13 2013 2013 HOH HOH A . B 2 HOH 14 2014 2014 HOH HOH A . B 2 HOH 15 2015 2015 HOH HOH A . B 2 HOH 16 2016 2016 HOH HOH A . B 2 HOH 17 2017 2017 HOH HOH A . B 2 HOH 18 2018 2018 HOH HOH A . B 2 HOH 19 2019 2019 HOH HOH A . B 2 HOH 20 2020 2020 HOH HOH A . B 2 HOH 21 2021 2021 HOH HOH A . B 2 HOH 22 2022 2022 HOH HOH A . B 2 HOH 23 2023 2023 HOH HOH A . B 2 HOH 24 2024 2024 HOH HOH A . B 2 HOH 25 2025 2025 HOH HOH A . B 2 HOH 26 2026 2026 HOH HOH A . B 2 HOH 27 2027 2027 HOH HOH A . B 2 HOH 28 2028 2028 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MLY 36 A MLY 51 ? LYS N-DIMETHYL-LYSINE 2 A MLY 42 A MLY 57 ? LYS N-DIMETHYL-LYSINE 3 A MLY 87 A MLY 102 ? LYS N-DIMETHYL-LYSINE 4 A MLY 102 A MLY 117 ? LYS N-DIMETHYL-LYSINE 5 A MLY 122 A MLY 137 ? LYS N-DIMETHYL-LYSINE 6 A MLY 126 A MLY 141 ? LYS N-DIMETHYL-LYSINE 7 A MLY 140 A MLY 155 ? LYS N-DIMETHYL-LYSINE 8 A MLY 142 A MLY 157 ? LYS N-DIMETHYL-LYSINE 9 A MLY 143 A MLY 158 ? LYS N-DIMETHYL-LYSINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1420 ? 1 MORE -16.0 ? 1 'SSA (A^2)' 17640 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 36.1366666667 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-12-04 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2019-04-03 5 'Structure model' 1 4 2023-12-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Experimental preparation' 6 4 'Structure model' Other 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Database references' 9 5 'Structure model' Other 10 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' exptl_crystal_grow 2 4 'Structure model' pdbx_database_proc 3 4 'Structure model' pdbx_database_status 4 4 'Structure model' pdbx_seq_map_depositor_info 5 4 'Structure model' struct_conn 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond 8 5 'Structure model' database_2 9 5 'Structure model' pdbx_database_status 10 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_exptl_crystal_grow.temp' 2 4 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 4 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code_mod' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 5 'Structure model' '_database_2.pdbx_DOI' 6 5 'Structure model' '_database_2.pdbx_database_accession' 7 5 'Structure model' '_pdbx_database_status.status_code_sf' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 34.5442 _pdbx_refine_tls.origin_y -24.9209 _pdbx_refine_tls.origin_z 14.3549 _pdbx_refine_tls.T[1][1] 0.2012 _pdbx_refine_tls.T[2][2] 0.1613 _pdbx_refine_tls.T[3][3] 0.1210 _pdbx_refine_tls.T[1][2] -0.0578 _pdbx_refine_tls.T[1][3] 0.0511 _pdbx_refine_tls.T[2][3] 0.0311 _pdbx_refine_tls.L[1][1] 1.4691 _pdbx_refine_tls.L[2][2] 0.3514 _pdbx_refine_tls.L[3][3] 0.7189 _pdbx_refine_tls.L[1][2] 0.4534 _pdbx_refine_tls.L[1][3] -0.5932 _pdbx_refine_tls.L[2][3] -0.1603 _pdbx_refine_tls.S[1][1] 0.2608 _pdbx_refine_tls.S[1][2] -0.0368 _pdbx_refine_tls.S[1][3] 0.2026 _pdbx_refine_tls.S[2][1] 0.1606 _pdbx_refine_tls.S[2][2] -0.0130 _pdbx_refine_tls.S[2][3] 0.1125 _pdbx_refine_tls.S[3][1] 0.0780 _pdbx_refine_tls.S[3][2] -0.0209 _pdbx_refine_tls.S[3][3] -0.0800 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details 'CHAIN A' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE)' ? 1 XDS 'data reduction' . ? 2 XSCALE 'data scaling' . ? 3 PHASER phasing . ? 4 # _pdbx_database_remark.id 650 _pdbx_database_remark.text ; HELIX DETERMINATION METHOD: AUTHOR PROVIDED. ; # _pdbx_entry_details.entry_id 2VGY _pdbx_entry_details.compound_details ;ENGINEERED RESIDUE IN CHAIN A, SER 94 TO GLU ENGINEERED RESIDUE IN CHAIN A, TYR 95 TO GLU ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details 'N-DIMETHYL-LYSINE (MLY): REDUCTIVE METHYLATION' _pdbx_entry_details.sequence_details ;SYCD RESIDUES 21-163. FIVE ADDITIONAL RESIDUES AT THE N- TERMINUS DUE TO PRESCISSION PROTEASE CLEAVAGE. DOUBLE-SITE MUTATION S94E_Y95E. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 34 ? ? -71.68 22.01 2 1 ASP A 66 ? ? -152.68 85.12 3 1 ASP A 100 ? ? -159.75 86.15 4 1 GLU A 119 ? ? -108.80 78.10 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -5 ? A GLY 1 2 1 Y 1 A PRO -4 ? A PRO 2 3 1 Y 1 A LEU -3 ? A LEU 3 4 1 Y 1 A GLY -2 ? A GLY 4 5 1 Y 1 A SER -1 ? A SER 5 6 1 Y 1 A GLY 21 ? A GLY 6 7 1 Y 1 A GLY 22 ? A GLY 7 8 1 Y 1 A GLY 23 ? A GLY 8 9 1 Y 1 A THR 24 ? A THR 9 10 1 Y 1 A ILE 25 ? A ILE 10 11 1 Y 1 A ALA 26 ? A ALA 11 12 1 Y 1 A MET 27 ? A MET 12 13 1 Y 1 A LEU 28 ? A LEU 13 14 1 Y 1 A LYS 161 ? A LYS 146 15 1 Y 1 A HIS 162 ? A HIS 147 16 1 Y 1 A GLU 163 ? A GLU 148 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 MLY N N N N 250 MLY CA C N S 251 MLY CB C N N 252 MLY CG C N N 253 MLY CD C N N 254 MLY CE C N N 255 MLY NZ N N N 256 MLY CH1 C N N 257 MLY CH2 C N N 258 MLY C C N N 259 MLY O O N N 260 MLY OXT O N N 261 MLY H H N N 262 MLY H2 H N N 263 MLY HA H N N 264 MLY HB2 H N N 265 MLY HB3 H N N 266 MLY HG2 H N N 267 MLY HG3 H N N 268 MLY HD2 H N N 269 MLY HD3 H N N 270 MLY HE2 H N N 271 MLY HE3 H N N 272 MLY HH11 H N N 273 MLY HH12 H N N 274 MLY HH13 H N N 275 MLY HH21 H N N 276 MLY HH22 H N N 277 MLY HH23 H N N 278 MLY HXT H N N 279 PHE N N N N 280 PHE CA C N S 281 PHE C C N N 282 PHE O O N N 283 PHE CB C N N 284 PHE CG C Y N 285 PHE CD1 C Y N 286 PHE CD2 C Y N 287 PHE CE1 C Y N 288 PHE CE2 C Y N 289 PHE CZ C Y N 290 PHE OXT O N N 291 PHE H H N N 292 PHE H2 H N N 293 PHE HA H N N 294 PHE HB2 H N N 295 PHE HB3 H N N 296 PHE HD1 H N N 297 PHE HD2 H N N 298 PHE HE1 H N N 299 PHE HE2 H N N 300 PHE HZ H N N 301 PHE HXT H N N 302 PRO N N N N 303 PRO CA C N S 304 PRO C C N N 305 PRO O O N N 306 PRO CB C N N 307 PRO CG C N N 308 PRO CD C N N 309 PRO OXT O N N 310 PRO H H N N 311 PRO HA H N N 312 PRO HB2 H N N 313 PRO HB3 H N N 314 PRO HG2 H N N 315 PRO HG3 H N N 316 PRO HD2 H N N 317 PRO HD3 H N N 318 PRO HXT H N N 319 SER N N N N 320 SER CA C N S 321 SER C C N N 322 SER O O N N 323 SER CB C N N 324 SER OG O N N 325 SER OXT O N N 326 SER H H N N 327 SER H2 H N N 328 SER HA H N N 329 SER HB2 H N N 330 SER HB3 H N N 331 SER HG H N N 332 SER HXT H N N 333 THR N N N N 334 THR CA C N S 335 THR C C N N 336 THR O O N N 337 THR CB C N R 338 THR OG1 O N N 339 THR CG2 C N N 340 THR OXT O N N 341 THR H H N N 342 THR H2 H N N 343 THR HA H N N 344 THR HB H N N 345 THR HG1 H N N 346 THR HG21 H N N 347 THR HG22 H N N 348 THR HG23 H N N 349 THR HXT H N N 350 TYR N N N N 351 TYR CA C N S 352 TYR C C N N 353 TYR O O N N 354 TYR CB C N N 355 TYR CG C Y N 356 TYR CD1 C Y N 357 TYR CD2 C Y N 358 TYR CE1 C Y N 359 TYR CE2 C Y N 360 TYR CZ C Y N 361 TYR OH O N N 362 TYR OXT O N N 363 TYR H H N N 364 TYR H2 H N N 365 TYR HA H N N 366 TYR HB2 H N N 367 TYR HB3 H N N 368 TYR HD1 H N N 369 TYR HD2 H N N 370 TYR HE1 H N N 371 TYR HE2 H N N 372 TYR HH H N N 373 TYR HXT H N N 374 VAL N N N N 375 VAL CA C N S 376 VAL C C N N 377 VAL O O N N 378 VAL CB C N N 379 VAL CG1 C N N 380 VAL CG2 C N N 381 VAL OXT O N N 382 VAL H H N N 383 VAL H2 H N N 384 VAL HA H N N 385 VAL HB H N N 386 VAL HG11 H N N 387 VAL HG12 H N N 388 VAL HG13 H N N 389 VAL HG21 H N N 390 VAL HG22 H N N 391 VAL HG23 H N N 392 VAL HXT H N N 393 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 MLY N CA sing N N 237 MLY N H sing N N 238 MLY N H2 sing N N 239 MLY CA CB sing N N 240 MLY CA C sing N N 241 MLY CA HA sing N N 242 MLY CB CG sing N N 243 MLY CB HB2 sing N N 244 MLY CB HB3 sing N N 245 MLY CG CD sing N N 246 MLY CG HG2 sing N N 247 MLY CG HG3 sing N N 248 MLY CD CE sing N N 249 MLY CD HD2 sing N N 250 MLY CD HD3 sing N N 251 MLY CE NZ sing N N 252 MLY CE HE2 sing N N 253 MLY CE HE3 sing N N 254 MLY NZ CH1 sing N N 255 MLY NZ CH2 sing N N 256 MLY CH1 HH11 sing N N 257 MLY CH1 HH12 sing N N 258 MLY CH1 HH13 sing N N 259 MLY CH2 HH21 sing N N 260 MLY CH2 HH22 sing N N 261 MLY CH2 HH23 sing N N 262 MLY C O doub N N 263 MLY C OXT sing N N 264 MLY OXT HXT sing N N 265 PHE N CA sing N N 266 PHE N H sing N N 267 PHE N H2 sing N N 268 PHE CA C sing N N 269 PHE CA CB sing N N 270 PHE CA HA sing N N 271 PHE C O doub N N 272 PHE C OXT sing N N 273 PHE CB CG sing N N 274 PHE CB HB2 sing N N 275 PHE CB HB3 sing N N 276 PHE CG CD1 doub Y N 277 PHE CG CD2 sing Y N 278 PHE CD1 CE1 sing Y N 279 PHE CD1 HD1 sing N N 280 PHE CD2 CE2 doub Y N 281 PHE CD2 HD2 sing N N 282 PHE CE1 CZ doub Y N 283 PHE CE1 HE1 sing N N 284 PHE CE2 CZ sing Y N 285 PHE CE2 HE2 sing N N 286 PHE CZ HZ sing N N 287 PHE OXT HXT sing N N 288 PRO N CA sing N N 289 PRO N CD sing N N 290 PRO N H sing N N 291 PRO CA C sing N N 292 PRO CA CB sing N N 293 PRO CA HA sing N N 294 PRO C O doub N N 295 PRO C OXT sing N N 296 PRO CB CG sing N N 297 PRO CB HB2 sing N N 298 PRO CB HB3 sing N N 299 PRO CG CD sing N N 300 PRO CG HG2 sing N N 301 PRO CG HG3 sing N N 302 PRO CD HD2 sing N N 303 PRO CD HD3 sing N N 304 PRO OXT HXT sing N N 305 SER N CA sing N N 306 SER N H sing N N 307 SER N H2 sing N N 308 SER CA C sing N N 309 SER CA CB sing N N 310 SER CA HA sing N N 311 SER C O doub N N 312 SER C OXT sing N N 313 SER CB OG sing N N 314 SER CB HB2 sing N N 315 SER CB HB3 sing N N 316 SER OG HG sing N N 317 SER OXT HXT sing N N 318 THR N CA sing N N 319 THR N H sing N N 320 THR N H2 sing N N 321 THR CA C sing N N 322 THR CA CB sing N N 323 THR CA HA sing N N 324 THR C O doub N N 325 THR C OXT sing N N 326 THR CB OG1 sing N N 327 THR CB CG2 sing N N 328 THR CB HB sing N N 329 THR OG1 HG1 sing N N 330 THR CG2 HG21 sing N N 331 THR CG2 HG22 sing N N 332 THR CG2 HG23 sing N N 333 THR OXT HXT sing N N 334 TYR N CA sing N N 335 TYR N H sing N N 336 TYR N H2 sing N N 337 TYR CA C sing N N 338 TYR CA CB sing N N 339 TYR CA HA sing N N 340 TYR C O doub N N 341 TYR C OXT sing N N 342 TYR CB CG sing N N 343 TYR CB HB2 sing N N 344 TYR CB HB3 sing N N 345 TYR CG CD1 doub Y N 346 TYR CG CD2 sing Y N 347 TYR CD1 CE1 sing Y N 348 TYR CD1 HD1 sing N N 349 TYR CD2 CE2 doub Y N 350 TYR CD2 HD2 sing N N 351 TYR CE1 CZ doub Y N 352 TYR CE1 HE1 sing N N 353 TYR CE2 CZ sing Y N 354 TYR CE2 HE2 sing N N 355 TYR CZ OH sing N N 356 TYR OH HH sing N N 357 TYR OXT HXT sing N N 358 VAL N CA sing N N 359 VAL N H sing N N 360 VAL N H2 sing N N 361 VAL CA C sing N N 362 VAL CA CB sing N N 363 VAL CA HA sing N N 364 VAL C O doub N N 365 VAL C OXT sing N N 366 VAL CB CG1 sing N N 367 VAL CB CG2 sing N N 368 VAL CB HB sing N N 369 VAL CG1 HG11 sing N N 370 VAL CG1 HG12 sing N N 371 VAL CG1 HG13 sing N N 372 VAL CG2 HG21 sing N N 373 VAL CG2 HG22 sing N N 374 VAL CG2 HG23 sing N N 375 VAL OXT HXT sing N N 376 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2VGX _pdbx_initial_refinement_model.details 'PDB ENTRY 2VGX' #