HEADER HYDROLASE 20-NOV-07 2VH9 TITLE CRYSTAL STRUCTURE OF NXG1-DELTAYNIIG IN COMPLEX WITH XLLG, A TITLE 2 XYLOGLUCAN DERIVED OLIGOSACCHARIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: XYLOGLUCAN HYDROLASE; COMPND 5 EC: 3.2.1.151, 3.2.1.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TROPAEOLUM MAJUS; SOURCE 3 ORGANISM_COMMON: NASTURTIUM; SOURCE 4 ORGANISM_TAXID: 4020; SOURCE 5 TISSUE: SEEDLING; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PPIC9 KEYWDS HYDROLASE, GLYCOSIDASE, FAMILY GH16, TROPAEOLUM MAJUS XYLOGLUCANASE, KEYWDS 2 XLLG OLIGOSACCHARIDE, LOOP MUTANT NXG1-YNIIG, SUBSTRATE COMPLEX, KEYWDS 3 GLYCOSIDE HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.CZJZEK,P.MARK,M.J.BAUMANN,J.M.EKLOF,G.MICHEL,H.BRUMER REVDAT 8 13-DEC-23 2VH9 1 HETSYN LINK REVDAT 7 29-JUL-20 2VH9 1 COMPND REMARK HETNAM LINK REVDAT 7 2 1 SITE ATOM REVDAT 6 08-MAY-19 2VH9 1 REMARK REVDAT 5 12-JUL-17 2VH9 1 REVDAT 4 17-AUG-11 2VH9 1 TITLE REMARK HETNAM HETSYN REVDAT 4 2 1 LINK HETATM VERSN REVDAT 3 16-MAR-11 2VH9 1 JRNL REMARK FORMUL SITE REVDAT 2 24-FEB-09 2VH9 1 VERSN REVDAT 1 25-NOV-08 2VH9 0 JRNL AUTH P.MARK,M.J.BAUMANN,J.M.EKLOF,F.GULLFOT,G.MICHEL,A.M.KALLAS, JRNL AUTH 2 T.T.TEERI,H.BRUMER,M.CZJZEK JRNL TITL ANALYSIS OF NASTURTIUM TMNXG1 COMPLEXES BY CRYSTALLOGRAPHY JRNL TITL 2 AND MOLECULAR DYNAMICS PROVIDES DETAILED INSIGHT INTO JRNL TITL 3 SUBSTRATE RECOGNITION BY FAMILY GH16 XYLOGLUCAN JRNL TITL 4 ENDO-TRANSGLYCOSYLASES AND ENDO-HYDROLASES. JRNL REF PROTEINS V. 75 820 2009 JRNL REFN ISSN 0887-3585 JRNL PMID 19004021 JRNL DOI 10.1002/PROT.22291 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 37994 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2719 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1950 REMARK 3 BIN FREE R VALUE SET COUNT : 139 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4298 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 200 REMARK 3 SOLVENT ATOMS : 515 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.18000 REMARK 3 B22 (A**2) : -0.18000 REMARK 3 B33 (A**2) : 0.27000 REMARK 3 B12 (A**2) : -0.09000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.168 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.158 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.913 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4654 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3822 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6348 ; 1.472 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8938 ; 0.815 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 530 ; 7.176 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 226 ;35.172 ;23.894 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 650 ;13.002 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;16.877 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 674 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5046 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 976 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 877 ; 0.258 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3901 ; 0.207 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2222 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2427 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 417 ; 0.180 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 24 ; 0.140 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 74 ; 0.186 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.226 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3402 ; 0.899 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4300 ; 1.037 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2466 ; 1.676 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2048 ; 2.520 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VH9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1290034490. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 213252 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2UWB REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE PROTEIN CRYSTALLIZED IN SITTING REMARK 280 DROPS (CORNING 96 WELL PLATE) MIXING 300 NL OF PROTEIN SOLUTION REMARK 280 WITH 150 NL OF WELL SOLUTION CONTAINING 0.2 M MAGNESIUM CHLORIDE, REMARK 280 0.1 M MES BUFFER AT PH 6.0 AND 20% PEG 6000, VAPOR DIFFUSION, REMARK 280 SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 20.37667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.75333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 PRO A -22 REMARK 465 PRO A -21 REMARK 465 ASN A -20 REMARK 465 ILE A -19 REMARK 465 LEU A -18 REMARK 465 SER A -17 REMARK 465 ILE A -16 REMARK 465 PHE A -15 REMARK 465 LEU A -14 REMARK 465 HIS A -13 REMARK 465 LEU A -12 REMARK 465 LEU A -11 REMARK 465 PRO A -10 REMARK 465 ILE A -9 REMARK 465 LEU A -8 REMARK 465 MET A -7 REMARK 465 PHE A -6 REMARK 465 SER A -5 REMARK 465 SER A -4 REMARK 465 SER A -3 REMARK 465 CYS A -2 REMARK 465 LEU A -1 REMARK 465 GLY A 0 REMARK 465 MET B -23 REMARK 465 PRO B -22 REMARK 465 PRO B -21 REMARK 465 ASN B -20 REMARK 465 ILE B -19 REMARK 465 LEU B -18 REMARK 465 SER B -17 REMARK 465 ILE B -16 REMARK 465 PHE B -15 REMARK 465 LEU B -14 REMARK 465 HIS B -13 REMARK 465 LEU B -12 REMARK 465 LEU B -11 REMARK 465 PRO B -10 REMARK 465 ILE B -9 REMARK 465 LEU B -8 REMARK 465 MET B -7 REMARK 465 PHE B -6 REMARK 465 SER B -5 REMARK 465 SER B -4 REMARK 465 SER B -3 REMARK 465 CYS B -2 REMARK 465 LEU B -1 REMARK 465 GLY B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 BGC G 1 C1 BGC H 1 1.60 REMARK 500 O4 BGC F 1 C1 BGC G 1 1.62 REMARK 500 C1 BGC C 1 O4 BGC A 303 1.64 REMARK 500 O4 BGC D 1 C1 BGC E 1 1.64 REMARK 500 O4 BGC C 1 C1 BGC D 1 1.66 REMARK 500 C1 BGC F 1 O4 BGC B 303 1.72 REMARK 500 O4 BGC C 1 O5 BGC D 1 2.02 REMARK 500 O4 BGC F 1 O5 BGC G 1 2.03 REMARK 500 O HOH B 402 O HOH B 548 2.14 REMARK 500 O HOH B 490 O HOH B 624 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 47 149.43 -173.55 REMARK 500 LYS A 91 60.95 -150.49 REMARK 500 TRP A 185 -14.09 -142.27 REMARK 500 SER B 47 147.69 -174.86 REMARK 500 PRO B 145 -9.78 -58.12 REMARK 500 TRP B 185 -14.30 -143.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 BGC C 1 REMARK 610 BGC D 1 REMARK 610 BGC E 1 REMARK 610 BGC F 1 REMARK 610 BGC G 1 REMARK 610 BGC H 1 REMARK 610 BGC A 303 REMARK 610 BGC B 303 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 259 OD1 REMARK 620 2 THR A 261 OG1 84.2 REMARK 620 3 HOH B 436 O 161.9 85.0 REMARK 620 4 HOH B 565 O 91.0 171.8 98.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 489 O REMARK 620 2 HOH A 535 O 97.6 REMARK 620 3 ASP B 259 OD1 163.2 86.0 REMARK 620 4 THR B 261 OG1 82.3 170.4 91.5 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2UWA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE NASTURTIUM SEEDLING XYLOGLUCANASE ISOFORM REMARK 900 NXG1 REMARK 900 RELATED ID: 2UWB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE NASTURTIUM SEEDLING MUTANT XYLOGLUCANASE REMARK 900 ISOFORM NXG1-DELTA-YNIIG REMARK 900 RELATED ID: 2UWC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NASTURTIUM XYLOGLUCAN HYDROLASE ISOFORM NXG2 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE LOOP YNIIG (RESIDUES 122-126) HAS BEEN DELETED DBREF 2VH9 A -23 121 UNP Q07524 Q07524_TROMA 1 145 DBREF 2VH9 A 122 266 UNP Q07524 Q07524_TROMA 151 295 DBREF 2VH9 B -23 121 UNP Q07524 Q07524_TROMA 1 145 DBREF 2VH9 B 122 266 UNP Q07524 Q07524_TROMA 151 295 SEQRES 1 A 290 MET PRO PRO ASN ILE LEU SER ILE PHE LEU HIS LEU LEU SEQRES 2 A 290 PRO ILE LEU MET PHE SER SER SER CYS LEU GLY GLN GLY SEQRES 3 A 290 PRO PRO SER PRO GLY TYR TYR PRO SER SER GLN ILE THR SEQRES 4 A 290 SER LEU GLY PHE ASP GLN GLY TYR THR ASN LEU TRP GLY SEQRES 5 A 290 PRO GLN HIS GLN ARG VAL ASP GLN GLY SER LEU THR ILE SEQRES 6 A 290 TRP LEU ASP SER THR SER GLY SER GLY PHE LYS SER ILE SEQRES 7 A 290 ASN ARG TYR ARG SER GLY TYR PHE GLY ALA ASN ILE LYS SEQRES 8 A 290 LEU GLN SER GLY TYR THR ALA GLY VAL ILE THR SER PHE SEQRES 9 A 290 TYR LEU SER ASN ASN GLN ASP TYR PRO GLY LYS HIS ASP SEQRES 10 A 290 GLU ILE ASP ILE GLU PHE LEU GLY THR ILE PRO GLY LYS SEQRES 11 A 290 PRO TYR THR LEU GLN THR ASN VAL PHE ILE GLU GLY SER SEQRES 12 A 290 GLY ASP ARG GLU MET ARG ILE HIS LEU TRP PHE ASP PRO SEQRES 13 A 290 THR GLN ASP TYR HIS ASN TYR ALA ILE TYR TRP THR PRO SEQRES 14 A 290 SER GLU ILE ILE PHE PHE VAL ASP ASP VAL PRO ILE ARG SEQRES 15 A 290 ARG TYR PRO ARG LYS SER ASP ALA THR PHE PRO LEU ARG SEQRES 16 A 290 PRO LEU TRP VAL TYR GLY SER VAL TRP ASP ALA SER SER SEQRES 17 A 290 TRP ALA THR GLU ASN GLY LYS TYR LYS ALA ASP TYR ARG SEQRES 18 A 290 TYR GLN PRO PHE VAL GLY LYS TYR GLU ASP PHE LYS LEU SEQRES 19 A 290 GLY SER CYS THR VAL GLU ALA ALA SER SER CYS ASN PRO SEQRES 20 A 290 ALA SER VAL SER PRO TYR GLY GLN LEU SER GLN GLN GLN SEQRES 21 A 290 VAL ALA ALA MET GLU TRP VAL GLN LYS ASN TYR MET VAL SEQRES 22 A 290 TYR ASN TYR CYS ASP ASP PRO THR ARG ASP HIS THR LEU SEQRES 23 A 290 THR PRO GLU CYS SEQRES 1 B 290 MET PRO PRO ASN ILE LEU SER ILE PHE LEU HIS LEU LEU SEQRES 2 B 290 PRO ILE LEU MET PHE SER SER SER CYS LEU GLY GLN GLY SEQRES 3 B 290 PRO PRO SER PRO GLY TYR TYR PRO SER SER GLN ILE THR SEQRES 4 B 290 SER LEU GLY PHE ASP GLN GLY TYR THR ASN LEU TRP GLY SEQRES 5 B 290 PRO GLN HIS GLN ARG VAL ASP GLN GLY SER LEU THR ILE SEQRES 6 B 290 TRP LEU ASP SER THR SER GLY SER GLY PHE LYS SER ILE SEQRES 7 B 290 ASN ARG TYR ARG SER GLY TYR PHE GLY ALA ASN ILE LYS SEQRES 8 B 290 LEU GLN SER GLY TYR THR ALA GLY VAL ILE THR SER PHE SEQRES 9 B 290 TYR LEU SER ASN ASN GLN ASP TYR PRO GLY LYS HIS ASP SEQRES 10 B 290 GLU ILE ASP ILE GLU PHE LEU GLY THR ILE PRO GLY LYS SEQRES 11 B 290 PRO TYR THR LEU GLN THR ASN VAL PHE ILE GLU GLY SER SEQRES 12 B 290 GLY ASP ARG GLU MET ARG ILE HIS LEU TRP PHE ASP PRO SEQRES 13 B 290 THR GLN ASP TYR HIS ASN TYR ALA ILE TYR TRP THR PRO SEQRES 14 B 290 SER GLU ILE ILE PHE PHE VAL ASP ASP VAL PRO ILE ARG SEQRES 15 B 290 ARG TYR PRO ARG LYS SER ASP ALA THR PHE PRO LEU ARG SEQRES 16 B 290 PRO LEU TRP VAL TYR GLY SER VAL TRP ASP ALA SER SER SEQRES 17 B 290 TRP ALA THR GLU ASN GLY LYS TYR LYS ALA ASP TYR ARG SEQRES 18 B 290 TYR GLN PRO PHE VAL GLY LYS TYR GLU ASP PHE LYS LEU SEQRES 19 B 290 GLY SER CYS THR VAL GLU ALA ALA SER SER CYS ASN PRO SEQRES 20 B 290 ALA SER VAL SER PRO TYR GLY GLN LEU SER GLN GLN GLN SEQRES 21 B 290 VAL ALA ALA MET GLU TRP VAL GLN LYS ASN TYR MET VAL SEQRES 22 B 290 TYR ASN TYR CYS ASP ASP PRO THR ARG ASP HIS THR LEU SEQRES 23 B 290 THR PRO GLU CYS HET BGC C 1 11 HET XYS C 2 9 HET GAL C 3 11 HET BGC D 1 11 HET XYS D 2 9 HET GAL D 3 11 HET BGC E 1 11 HET XYS E 2 9 HET BGC F 1 11 HET XYS F 2 9 HET GAL F 3 11 HET BGC G 1 11 HET XYS G 2 9 HET GAL G 3 11 HET BGC H 1 11 HET XYS H 2 9 HET ZN A 301 1 HET GOL A 302 6 HET BGC A 303 11 HET GOL B 301 6 HET ZN B 302 1 HET BGC B 303 11 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM XYS ALPHA-D-XYLOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN XYS ALPHA-D-XYLOSE; D-XYLOSE; XYLOSE; XYLOPYRANOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 BGC 8(C6 H12 O6) FORMUL 3 XYS 6(C5 H10 O5) FORMUL 3 GAL 4(C6 H12 O6) FORMUL 9 ZN 2(ZN 2+) FORMUL 10 GOL 2(C3 H8 O3) FORMUL 15 HOH *515(H2 O) HELIX 1 AA1 TYR A 9 ILE A 14 5 6 HELIX 2 AA2 GLY A 18 GLY A 22 1 5 HELIX 3 AA3 GLY A 28 GLN A 30 5 3 HELIX 4 AA4 SER A 164 PHE A 168 5 5 HELIX 5 AA5 THR A 187 LYS A 191 5 5 HELIX 6 AA6 ASP A 195 GLN A 199 5 5 HELIX 7 AA7 SER A 233 TYR A 247 1 15 HELIX 8 AA8 CYS A 253 ASP A 255 5 3 HELIX 9 AA9 ASP A 259 THR A 263 5 5 HELIX 10 AB1 TYR B 9 ILE B 14 5 6 HELIX 11 AB2 GLY B 18 GLY B 22 1 5 HELIX 12 AB3 GLY B 28 GLN B 30 5 3 HELIX 13 AB4 SER B 164 PHE B 168 5 5 HELIX 14 AB5 THR B 187 LYS B 191 5 5 HELIX 15 AB6 ASP B 195 GLN B 199 5 5 HELIX 16 AB7 SER B 233 TYR B 247 1 15 HELIX 17 AB8 CYS B 253 ASP B 255 5 3 HELIX 18 AB9 ASP B 259 THR B 263 5 5 SHEET 1 AA1 8 TYR A 23 TRP A 27 0 SHEET 2 AA1 8 SER A 49 SER A 53 -1 O GLY A 50 N LEU A 26 SHEET 3 AA1 8 TRP A 174 ASP A 181 -1 O VAL A 175 N SER A 53 SHEET 4 AA1 8 VAL A 76 SER A 83 -1 N TYR A 81 O TYR A 176 SHEET 5 AA1 8 GLU A 94 LEU A 100 -1 O PHE A 99 N THR A 78 SHEET 6 AA1 8 THR A 109 PHE A 115 -1 O GLN A 111 N GLU A 98 SHEET 7 AA1 8 MET A 124 ILE A 126 -1 O MET A 124 N THR A 112 SHEET 8 AA1 8 MET A 248 ASN A 251 -1 O VAL A 249 N ARG A 125 SHEET 1 AA2 7 GLN A 32 ASP A 35 0 SHEET 2 AA2 7 SER A 38 LEU A 43 -1 O THR A 40 N ARG A 33 SHEET 3 AA2 7 PHE A 201 THR A 214 -1 O TYR A 205 N LEU A 39 SHEET 4 AA2 7 TYR A 57 LYS A 67 -1 N ASN A 65 O GLU A 206 SHEET 5 AA2 7 HIS A 137 TRP A 143 -1 O TRP A 143 N GLY A 60 SHEET 6 AA2 7 GLU A 147 VAL A 152 -1 O ILE A 149 N TYR A 142 SHEET 7 AA2 7 VAL A 155 PRO A 161 -1 O TYR A 160 N ILE A 148 SHEET 1 AA3 8 TYR B 23 TRP B 27 0 SHEET 2 AA3 8 SER B 49 SER B 53 -1 O GLY B 50 N LEU B 26 SHEET 3 AA3 8 TRP B 174 ASP B 181 -1 O VAL B 175 N SER B 53 SHEET 4 AA3 8 VAL B 76 SER B 83 -1 N SER B 83 O TRP B 174 SHEET 5 AA3 8 GLU B 94 LEU B 100 -1 O PHE B 99 N THR B 78 SHEET 6 AA3 8 THR B 109 PHE B 115 -1 O THR B 109 N LEU B 100 SHEET 7 AA3 8 MET B 124 ILE B 126 -1 O MET B 124 N THR B 112 SHEET 8 AA3 8 MET B 248 ASN B 251 -1 O TYR B 250 N ARG B 125 SHEET 1 AA4 7 GLN B 32 ASP B 35 0 SHEET 2 AA4 7 SER B 38 LEU B 43 -1 O THR B 40 N ARG B 33 SHEET 3 AA4 7 PHE B 201 THR B 214 -1 O GLY B 203 N ILE B 41 SHEET 4 AA4 7 TYR B 57 LYS B 67 -1 N ASN B 65 O GLU B 206 SHEET 5 AA4 7 HIS B 137 THR B 144 -1 O ILE B 141 N PHE B 62 SHEET 6 AA4 7 GLU B 147 VAL B 152 -1 O GLU B 147 N THR B 144 SHEET 7 AA4 7 VAL B 155 PRO B 161 -1 O TYR B 160 N ILE B 148 SSBOND 1 CYS A 213 CYS A 221 1555 1555 2.11 SSBOND 2 CYS A 253 CYS A 266 1555 1555 2.07 SSBOND 3 CYS B 213 CYS B 221 1555 1555 2.12 SSBOND 4 CYS B 253 CYS B 266 1555 1555 2.07 LINK O6 BGC C 1 C1 XYS C 2 1555 1555 1.34 LINK O2 XYS C 2 C1 GAL C 3 1555 1555 1.42 LINK O6 BGC D 1 C1 XYS D 2 1555 1555 1.34 LINK O2 XYS D 2 C1 GAL D 3 1555 1555 1.44 LINK O6 BGC E 1 C1 XYS E 2 1555 1555 1.35 LINK O6 BGC F 1 C1 XYS F 2 1555 1555 1.33 LINK O2 XYS F 2 C1 GAL F 3 1555 1555 1.43 LINK O6 BGC G 1 C1 XYS G 2 1555 1555 1.34 LINK O2 XYS G 2 C1 GAL G 3 1555 1555 1.44 LINK O6 BGC H 1 C1 XYS H 2 1555 1555 1.34 LINK OD1 ASP A 259 ZN ZN A 301 1555 1555 2.26 LINK OG1 THR A 261 ZN ZN A 301 1555 1555 2.46 LINK ZN ZN A 301 O HOH B 436 1555 2655 2.34 LINK ZN ZN A 301 O HOH B 565 1555 2655 2.38 LINK O HOH A 489 ZN ZN B 302 3554 1555 2.16 LINK O HOH A 535 ZN ZN B 302 3554 1555 2.39 LINK OD1 ASP B 259 ZN ZN B 302 1555 1555 2.23 LINK OG1 THR B 261 ZN ZN B 302 1555 1555 2.48 CISPEP 1 GLN A 199 PRO A 200 0 -0.89 CISPEP 2 GLN B 199 PRO B 200 0 -3.04 CRYST1 100.540 100.540 61.130 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009946 0.005742 0.000000 0.00000 SCALE2 0.000000 0.011485 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016359 0.00000 MTRIX1 1 -0.499730 -0.866180 0.000270 50.24370 1 MTRIX2 1 -0.866180 -0.499730 -0.000530 29.07050 1 MTRIX3 1 0.000330 -0.000500 -1.000000 141.49600 1