HEADER TRANSFERASE 21-NOV-07 2VHE TITLE PGLD-COA COMPLEX: AN ACETYL TRANSFERASE FROM CAMPYLOBACTER JEJUNI COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 2-195; COMPND 5 SYNONYM: N-ACETYLTRANSFERASE; COMPND 6 EC: 2.7.7.23; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMPYLOBACTER JEJUNI; SOURCE 3 ORGANISM_TAXID: 197; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(RIPL) KEYWDS COENZYME A, TRANSFERASE, N-ACETYL TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.S.RANGARAJAN,K.M.RUANE,T.SULEA,D.C.WATSON,A.PROTEAU,S.LECLERC, AUTHOR 2 M.CYGLER,A.MATTE,N.M.YOUNG REVDAT 7 31-JAN-24 2VHE 1 REMARK REVDAT 6 02-NOV-22 2VHE 1 REMARK REVDAT 5 28-SEP-11 2VHE 1 REMARK HET HETATM REVDAT 4 13-JUL-11 2VHE 1 VERSN REVDAT 3 24-FEB-09 2VHE 1 VERSN REVDAT 2 26-FEB-08 2VHE 1 JRNL REVDAT 1 29-JAN-08 2VHE 0 JRNL AUTH E.S.RANGARAJAN,K.M.RUANE,T.SULEA,D.C.WATSON,A.PROTEAU, JRNL AUTH 2 S.LECLERC,M.CYGLER,A.MATTE,N.M.YOUNG JRNL TITL STRUCTURE AND ACTIVE SITE RESIDUES OF PGLD, AN JRNL TITL 2 N-ACETYLTRANSFERASE FROM THE BACILLOSAMINE SYNTHETIC PATHWAY JRNL TITL 3 REQUIRED FOR N-GLYCAN SYNTHESIS IN CAMPYLOBACTER JEJUNI JRNL REF BIOCHEMISTRY V. 47 1827 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18198901 JRNL DOI 10.1021/BI702032R REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 46151 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2457 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3388 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 184 REMARK 3 BIN FREE R VALUE : 0.3390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2810 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 263 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : 0.13000 REMARK 3 B12 (A**2) : -0.04000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.109 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.977 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2999 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4058 ; 1.604 ; 2.008 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 379 ; 8.424 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 109 ;40.852 ;25.596 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 531 ;14.335 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;10.317 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 462 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2124 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1421 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2043 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 236 ; 0.133 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 102 ; 0.195 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 31 ; 0.155 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1922 ; 0.880 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2988 ; 1.341 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1208 ; 2.289 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1066 ; 3.417 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 195 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7410 10.0760 -0.1380 REMARK 3 T TENSOR REMARK 3 T11: -0.0543 T22: -0.0561 REMARK 3 T33: -0.0026 T12: -0.0243 REMARK 3 T13: 0.0085 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 1.8689 L22: 0.7314 REMARK 3 L33: 0.7307 L12: 0.4277 REMARK 3 L13: -0.6579 L23: -0.1787 REMARK 3 S TENSOR REMARK 3 S11: 0.0148 S12: -0.0121 S13: 0.1134 REMARK 3 S21: 0.0436 S22: -0.0141 S23: -0.1242 REMARK 3 S31: -0.0512 S32: 0.0726 S33: -0.0007 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 195 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8920 8.1660 71.5430 REMARK 3 T TENSOR REMARK 3 T11: -0.0319 T22: -0.0223 REMARK 3 T33: 0.0121 T12: -0.0288 REMARK 3 T13: 0.0225 T23: 0.0697 REMARK 3 L TENSOR REMARK 3 L11: 1.5870 L22: 0.8383 REMARK 3 L33: 1.0379 L12: 0.3436 REMARK 3 L13: -0.4175 L23: -0.1696 REMARK 3 S TENSOR REMARK 3 S11: -0.1352 S12: 0.1936 S13: 0.1058 REMARK 3 S21: -0.1519 S22: -0.0203 S23: -0.1639 REMARK 3 S31: -0.0483 S32: 0.1027 S33: 0.1555 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 36-46 AND 182-183 ARE DISORDERED REMARK 4 REMARK 4 2VHE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1290034502. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9756 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48692 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2NPO REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE PH 5.6, 0.16 M REMARK 280 SODIUM TARTRATE AND 2.0 M AMMONIUM SULFATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.62500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.65101 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.67567 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 49.62500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 28.65101 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 47.67567 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 49.62500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 28.65101 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.67567 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.30201 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 95.35133 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 57.30201 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 95.35133 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 57.30201 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 95.35133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 532 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 511 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP B 36 REMARK 465 PHE B 37 REMARK 465 LYS B 38 REMARK 465 GLY B 39 REMARK 465 MET B 40 REMARK 465 LYS B 41 REMARK 465 PHE B 42 REMARK 465 GLU B 43 REMARK 465 SER B 44 REMARK 465 THR B 45 REMARK 465 LEU B 46 REMARK 465 ASP B 182 REMARK 465 GLU B 183 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 30 CD OE1 OE2 REMARK 470 ASP A 35 CG OD1 OD2 REMARK 470 LYS A 63 CD CE NZ REMARK 470 LYS A 67 CD CE NZ REMARK 470 GLU A 183 CG CD OE1 OE2 REMARK 470 LYS B 6 CD CE NZ REMARK 470 GLU B 30 CG CD OE1 OE2 REMARK 470 LYS B 63 CD CE NZ REMARK 470 LYS B 67 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 144 O HOH B 401 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 67 C ILE A 68 N -0.152 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 48 O - C - N ANGL. DEV. = 11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 13 -178.77 -68.45 REMARK 500 LYS A 38 42.23 -149.66 REMARK 500 TYR A 102 15.76 59.97 REMARK 500 ASN A 162 -1.11 74.98 REMARK 500 SER B 13 -174.32 -66.80 REMARK 500 ASN B 162 -6.58 74.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO B 47 LYS B 48 -57.08 REMARK 500 LYS B 48 TYR B 49 -98.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 518 DISTANCE = 5.90 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BHP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF APO-PGLD FROM CAMPYLOBACTER JEJUNI REMARK 999 REMARK 999 SEQUENCE REMARK 999 FIRST XXX CORESPOND TO THE TAG. NO. STARTS FROM ALA 2. REMARK 999 EXPAND DBREF 2VHE A 2 195 UNP Q0P9D1 Q0P9D1_CAMJE 2 195 DBREF 2VHE B 2 195 UNP Q0P9D1 Q0P9D1_CAMJE 2 195 SEQRES 1 A 194 ALA ARG THR GLU LYS ILE TYR ILE TYR GLY ALA SER GLY SEQRES 2 A 194 HIS GLY LEU VAL CYS GLU ASP VAL ALA LYS ASN MET GLY SEQRES 3 A 194 TYR LYS GLU CYS ILE PHE LEU ASP ASP PHE LYS GLY MET SEQRES 4 A 194 LYS PHE GLU SER THR LEU PRO LYS TYR ASP PHE PHE ILE SEQRES 5 A 194 ALA ILE GLY ASN ASN GLU ILE ARG LYS LYS ILE TYR GLN SEQRES 6 A 194 LYS ILE SER GLU ASN GLY PHE LYS ILE VAL ASN LEU ILE SEQRES 7 A 194 HIS LYS SER ALA LEU ILE SER PRO SER ALA ILE VAL GLU SEQRES 8 A 194 GLU ASN ALA GLY ILE LEU ILE MET PRO TYR VAL VAL ILE SEQRES 9 A 194 ASN ALA LYS ALA LYS ILE GLU LYS GLY VAL ILE LEU ASN SEQRES 10 A 194 THR SER SER VAL ILE GLU HIS GLU CYS VAL ILE GLY GLU SEQRES 11 A 194 PHE SER HIS VAL SER VAL GLY ALA LYS CYS ALA GLY ASN SEQRES 12 A 194 VAL LYS ILE GLY LYS ASN CYS PHE LEU GLY ILE ASN SER SEQRES 13 A 194 CYS VAL LEU PRO ASN LEU SER LEU ALA ASP ASP SER ILE SEQRES 14 A 194 LEU GLY GLY GLY ALA THR LEU VAL LYS ASN GLN ASP GLU SEQRES 15 A 194 LYS GLY VAL PHE VAL GLY VAL PRO ALA LYS ARG MET SEQRES 1 B 194 ALA ARG THR GLU LYS ILE TYR ILE TYR GLY ALA SER GLY SEQRES 2 B 194 HIS GLY LEU VAL CYS GLU ASP VAL ALA LYS ASN MET GLY SEQRES 3 B 194 TYR LYS GLU CYS ILE PHE LEU ASP ASP PHE LYS GLY MET SEQRES 4 B 194 LYS PHE GLU SER THR LEU PRO LYS TYR ASP PHE PHE ILE SEQRES 5 B 194 ALA ILE GLY ASN ASN GLU ILE ARG LYS LYS ILE TYR GLN SEQRES 6 B 194 LYS ILE SER GLU ASN GLY PHE LYS ILE VAL ASN LEU ILE SEQRES 7 B 194 HIS LYS SER ALA LEU ILE SER PRO SER ALA ILE VAL GLU SEQRES 8 B 194 GLU ASN ALA GLY ILE LEU ILE MET PRO TYR VAL VAL ILE SEQRES 9 B 194 ASN ALA LYS ALA LYS ILE GLU LYS GLY VAL ILE LEU ASN SEQRES 10 B 194 THR SER SER VAL ILE GLU HIS GLU CYS VAL ILE GLY GLU SEQRES 11 B 194 PHE SER HIS VAL SER VAL GLY ALA LYS CYS ALA GLY ASN SEQRES 12 B 194 VAL LYS ILE GLY LYS ASN CYS PHE LEU GLY ILE ASN SER SEQRES 13 B 194 CYS VAL LEU PRO ASN LEU SER LEU ALA ASP ASP SER ILE SEQRES 14 B 194 LEU GLY GLY GLY ALA THR LEU VAL LYS ASN GLN ASP GLU SEQRES 15 B 194 LYS GLY VAL PHE VAL GLY VAL PRO ALA LYS ARG MET HET COA A 300 48 HET SO4 A 301 5 HET SO4 A 302 5 HET COA B 300 48 HETNAM COA COENZYME A HETNAM SO4 SULFATE ION FORMUL 3 COA 2(C21 H36 N7 O16 P3 S) FORMUL 4 SO4 2(O4 S 2-) FORMUL 7 HOH *263(H2 O) HELIX 1 1 SER A 13 MET A 26 1 14 HELIX 2 2 ASN A 57 ASN A 71 1 15 HELIX 3 3 SER B 13 GLY B 27 1 15 HELIX 4 4 ASN B 57 ASN B 71 1 15 SHEET 1 AA 3 GLU A 30 LEU A 34 0 SHEET 2 AA 3 LYS A 6 TYR A 10 1 O ILE A 7 N ILE A 32 SHEET 3 AA 3 ASP A 50 ILE A 53 1 O ASP A 50 N TYR A 8 SHEET 1 AB 8 LEU A 78 ILE A 79 0 SHEET 2 AB 8 LEU A 98 ILE A 99 1 N ILE A 99 O LEU A 78 SHEET 3 AB 8 ILE A 116 LEU A 117 1 N LEU A 117 O LEU A 98 SHEET 4 AB 8 HIS A 134 VAL A 135 1 N VAL A 135 O ILE A 116 SHEET 5 AB 8 PHE A 152 LEU A 153 1 N LEU A 153 O HIS A 134 SHEET 6 AB 8 ILE A 170 LEU A 171 1 N LEU A 171 O PHE A 152 SHEET 7 AB 8 VAL A 186 VAL A 188 1 N PHE A 187 O ILE A 170 SHEET 8 AB 8 LYS A 193 ARG A 194 -1 O LYS A 193 N VAL A 188 SHEET 1 AC 6 LEU A 84 ILE A 85 0 SHEET 2 AC 6 VAL A 104 ILE A 105 1 N ILE A 105 O LEU A 84 SHEET 3 AC 6 VAL A 122 ILE A 123 1 N ILE A 123 O VAL A 104 SHEET 4 AC 6 LYS A 140 CYS A 141 1 N CYS A 141 O VAL A 122 SHEET 5 AC 6 CYS A 158 VAL A 159 1 N VAL A 159 O LYS A 140 SHEET 6 AC 6 THR A 176 LEU A 177 1 N LEU A 177 O CYS A 158 SHEET 1 AD 5 ILE A 90 VAL A 91 0 SHEET 2 AD 5 LYS A 110 ILE A 111 1 N ILE A 111 O ILE A 90 SHEET 3 AD 5 VAL A 128 ILE A 129 1 N ILE A 129 O LYS A 110 SHEET 4 AD 5 LYS A 146 ILE A 147 1 N ILE A 147 O VAL A 128 SHEET 5 AD 5 SER A 164 LEU A 165 1 N LEU A 165 O LYS A 146 SHEET 1 BA 3 GLU B 30 LEU B 34 0 SHEET 2 BA 3 LYS B 6 TYR B 10 1 O ILE B 7 N ILE B 32 SHEET 3 BA 3 ASP B 50 ILE B 53 1 O ASP B 50 N TYR B 8 SHEET 1 BB 8 LEU B 78 ILE B 79 0 SHEET 2 BB 8 LEU B 98 ILE B 99 1 N ILE B 99 O LEU B 78 SHEET 3 BB 8 ILE B 116 LEU B 117 1 N LEU B 117 O LEU B 98 SHEET 4 BB 8 HIS B 134 VAL B 135 1 N VAL B 135 O ILE B 116 SHEET 5 BB 8 PHE B 152 LEU B 153 1 N LEU B 153 O HIS B 134 SHEET 6 BB 8 ILE B 170 LEU B 171 1 N LEU B 171 O PHE B 152 SHEET 7 BB 8 VAL B 186 VAL B 188 1 N PHE B 187 O ILE B 170 SHEET 8 BB 8 LYS B 193 ARG B 194 -1 O LYS B 193 N VAL B 188 SHEET 1 BC 6 LEU B 84 ILE B 85 0 SHEET 2 BC 6 VAL B 104 ILE B 105 1 N ILE B 105 O LEU B 84 SHEET 3 BC 6 VAL B 122 ILE B 123 1 N ILE B 123 O VAL B 104 SHEET 4 BC 6 LYS B 140 CYS B 141 1 N CYS B 141 O VAL B 122 SHEET 5 BC 6 CYS B 158 VAL B 159 1 N VAL B 159 O LYS B 140 SHEET 6 BC 6 THR B 176 LEU B 177 1 N LEU B 177 O CYS B 158 SHEET 1 BD 5 ILE B 90 VAL B 91 0 SHEET 2 BD 5 LYS B 110 ILE B 111 1 N ILE B 111 O ILE B 90 SHEET 3 BD 5 VAL B 128 ILE B 129 1 N ILE B 129 O LYS B 110 SHEET 4 BD 5 LYS B 146 ILE B 147 1 N ILE B 147 O VAL B 128 SHEET 5 BD 5 SER B 164 LEU B 165 1 N LEU B 165 O LYS B 146 CISPEP 1 VAL A 190 PRO A 191 0 6.76 CISPEP 2 VAL B 190 PRO B 191 0 3.60 SITE 1 AC1 17 SER A 136 VAL A 137 ALA A 142 PHE A 152 SITE 2 AC1 17 GLY A 154 ILE A 155 LEU A 160 PRO A 161 SITE 3 AC1 17 GLY A 172 GLY A 173 VAL A 188 PRO A 191 SITE 4 AC1 17 MET A 195 HOH A 486 HOH A 453 HOH A 488 SITE 5 AC1 17 HOH A 409 SITE 1 AC2 20 SER A 44 HOH A 422 HOH A 457 SER B 136 SITE 2 AC2 20 VAL B 137 ALA B 142 PHE B 152 GLY B 154 SITE 3 AC2 20 ILE B 155 LEU B 160 PRO B 161 GLY B 172 SITE 4 AC2 20 GLY B 173 VAL B 178 LYS B 179 PRO B 191 SITE 5 AC2 20 MET B 195 HOH B 408 HOH B 464 HOH B 438 SITE 1 AC3 11 PRO A 47 LYS A 48 HOH A 420 SER B 13 SITE 2 AC3 11 GLY B 14 HIS B 15 HIS B 125 ASN B 144 SITE 3 AC3 11 HOH B 454 HOH B 404 HOH A 418 SITE 1 AC4 5 SER A 13 GLY A 14 HIS A 15 HIS A 125 SITE 2 AC4 5 HOH A 429 CRYST1 99.250 99.250 143.027 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010076 0.005817 0.000000 0.00000 SCALE2 0.000000 0.011634 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006992 0.00000 MTRIX1 1 0.990700 -0.136100 -0.008404 0.40160 1 MTRIX2 1 0.136100 0.990700 -0.006127 0.62430 1 MTRIX3 1 0.009160 0.004926 0.999900 -71.73000 1