data_2VHG # _entry.id 2VHG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2VHG pdb_00002vhg 10.2210/pdb2vhg/pdb PDBE EBI-34532 ? ? WWPDB D_1290034532 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2A6M unspecified 'CRYSTAL STRUCTURE OF THE ISHP608 TRANSPOSASE' PDB 2A6O unspecified 'CRYSTAL STRUCTURE OF THE ISHP608 TRANSPOSASE IN COMPLEXWITH STEM-LOOP DNA' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2VHG _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2007-11-21 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Barabas, O.' 1 'Ronning, D.R.' 2 'Guynet, C.' 3 'Hickman, A.B.' 4 'Ton-Hoang, B.' 5 'Chandler, M.' 6 'Dyda, F.' 7 # _citation.id primary _citation.title 'Mechanism of is200/is605 Family DNA Transposases: Activation and Transposon-Directed Target Site Selection.' _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_volume 132 _citation.page_first 208 _citation.page_last ? _citation.year 2008 _citation.journal_id_ASTM CELLB5 _citation.country US _citation.journal_id_ISSN 0092-8674 _citation.journal_id_CSD 0998 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18243097 _citation.pdbx_database_id_DOI 10.1016/J.CELL.2007.12.029 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Barabas, O.' 1 ? primary 'Ronning, D.R.' 2 ? primary 'Guynet, C.' 3 ? primary 'Hickman, A.B.' 4 ? primary 'Ton-Hoang, B.' 5 ? primary 'Chandler, M.' 6 ? primary 'Dyda, F.' 7 ? # _cell.entry_id 2VHG _cell.length_a 66.466 _cell.length_b 90.925 _cell.length_c 93.418 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VHG _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'TRANSPOSASE ORFA' 18392.430 2 ? ? 'RESIDUES 2-155' ? 2 polymer syn 'RIGHT END 31-MER' 9543.145 2 ? ? ? ? 3 non-polymer syn 'MANGANESE (II) ION' 54.938 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'TRANSPOSASE, IS608 TRANSPOSASE' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSAMASNAVLYKSNHNVVYSCKYHIVWCPKYRRKVLVGAVEMRLKEIIQEVAKELRVEIIEMQTDKDHIHILADIDPSFG VMKFIKTAKGRSSRILRQEFNHLKTKLPTLWTNSCFISTVGGAPLNVVKQYIENQQNSNRPKQKEKWKSYVDNLQTKAL ; ;GSAMASNAVLYKSNHNVVYSCKYHIVWCPKYRRKVLVGAVEMRLKEIIQEVAKELRVEIIEMQTDKDHIHILADIDPSFG VMKFIKTAKGRSSRILRQEFNHLKTKLPTLWTNSCFISTVGGAPLNVVKQYIENQQNSNRPKQKEKWKSYVDNLQTKAL ; A,B ? 2 polydeoxyribonucleotide no no ;(DC)(DC)(DC)(DC)(DT)(DA)(DG)(DC)(DT)(DT)(DT)(DA)(DG)(DC)(DT)(DA)(DT)(DG)(DG)(DG) (DG)(DA)(DG)(DT)(DA)(DT)(DG)(DT)(DC)(DA)(DA) ; CCCCTAGCTTTAGCTATGGGGAGTATGTCAA C,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 ALA n 1 4 MET n 1 5 ALA n 1 6 SER n 1 7 ASN n 1 8 ALA n 1 9 VAL n 1 10 LEU n 1 11 TYR n 1 12 LYS n 1 13 SER n 1 14 ASN n 1 15 HIS n 1 16 ASN n 1 17 VAL n 1 18 VAL n 1 19 TYR n 1 20 SER n 1 21 CYS n 1 22 LYS n 1 23 TYR n 1 24 HIS n 1 25 ILE n 1 26 VAL n 1 27 TRP n 1 28 CYS n 1 29 PRO n 1 30 LYS n 1 31 TYR n 1 32 ARG n 1 33 ARG n 1 34 LYS n 1 35 VAL n 1 36 LEU n 1 37 VAL n 1 38 GLY n 1 39 ALA n 1 40 VAL n 1 41 GLU n 1 42 MET n 1 43 ARG n 1 44 LEU n 1 45 LYS n 1 46 GLU n 1 47 ILE n 1 48 ILE n 1 49 GLN n 1 50 GLU n 1 51 VAL n 1 52 ALA n 1 53 LYS n 1 54 GLU n 1 55 LEU n 1 56 ARG n 1 57 VAL n 1 58 GLU n 1 59 ILE n 1 60 ILE n 1 61 GLU n 1 62 MET n 1 63 GLN n 1 64 THR n 1 65 ASP n 1 66 LYS n 1 67 ASP n 1 68 HIS n 1 69 ILE n 1 70 HIS n 1 71 ILE n 1 72 LEU n 1 73 ALA n 1 74 ASP n 1 75 ILE n 1 76 ASP n 1 77 PRO n 1 78 SER n 1 79 PHE n 1 80 GLY n 1 81 VAL n 1 82 MET n 1 83 LYS n 1 84 PHE n 1 85 ILE n 1 86 LYS n 1 87 THR n 1 88 ALA n 1 89 LYS n 1 90 GLY n 1 91 ARG n 1 92 SER n 1 93 SER n 1 94 ARG n 1 95 ILE n 1 96 LEU n 1 97 ARG n 1 98 GLN n 1 99 GLU n 1 100 PHE n 1 101 ASN n 1 102 HIS n 1 103 LEU n 1 104 LYS n 1 105 THR n 1 106 LYS n 1 107 LEU n 1 108 PRO n 1 109 THR n 1 110 LEU n 1 111 TRP n 1 112 THR n 1 113 ASN n 1 114 SER n 1 115 CYS n 1 116 PHE n 1 117 ILE n 1 118 SER n 1 119 THR n 1 120 VAL n 1 121 GLY n 1 122 GLY n 1 123 ALA n 1 124 PRO n 1 125 LEU n 1 126 ASN n 1 127 VAL n 1 128 VAL n 1 129 LYS n 1 130 GLN n 1 131 TYR n 1 132 ILE n 1 133 GLU n 1 134 ASN n 1 135 GLN n 1 136 GLN n 1 137 ASN n 1 138 SER n 1 139 ASN n 1 140 ARG n 1 141 PRO n 1 142 LYS n 1 143 GLN n 1 144 LYS n 1 145 GLU n 1 146 LYS n 1 147 TRP n 1 148 LYS n 1 149 SER n 1 150 TYR n 1 151 VAL n 1 152 ASP n 1 153 ASN n 1 154 LEU n 1 155 GLN n 1 156 THR n 1 157 LYS n 1 158 ALA n 1 159 LEU n 2 1 DC n 2 2 DC n 2 3 DC n 2 4 DC n 2 5 DT n 2 6 DA n 2 7 DG n 2 8 DC n 2 9 DT n 2 10 DT n 2 11 DT n 2 12 DA n 2 13 DG n 2 14 DC n 2 15 DT n 2 16 DA n 2 17 DT n 2 18 DG n 2 19 DG n 2 20 DG n 2 21 DG n 2 22 DA n 2 23 DG n 2 24 DT n 2 25 DA n 2 26 DT n 2 27 DG n 2 28 DT n 2 29 DC n 2 30 DA n 2 31 DA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain PECAN2A _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HELICOBACTER PYLORI' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 210 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector PET32B _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'HELICOBACTER PYLORI' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 210 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2VHG 1 ? ? 2VHG ? 2 UNP Q933Z0_HELPY 1 ? ? Q933Z0 ? 3 PDB 2VHG 2 ? ? 2VHG ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2VHG A 1 ? 5 ? 2VHG -3 ? 1 ? -3 1 2 2 2VHG A 6 ? 159 ? Q933Z0 2 ? 155 ? 2 155 3 1 2VHG B 1 ? 5 ? 2VHG -3 ? 1 ? -3 1 4 2 2VHG B 6 ? 159 ? Q933Z0 2 ? 155 ? 2 155 5 3 2VHG C 1 ? 31 ? 2VHG -31 ? -1 ? -31 -1 6 3 2VHG D 1 ? 31 ? 2VHG -31 ? -1 ? -31 -1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2VHG _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.5 _exptl_crystal.density_percent_sol 54 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '15-20% PEG 3350 AND 0.1 M MES PH 6.5' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details 'ROSENBAUM-ROCK VERTICAL FOCUSING MIRROR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DOUBLE-CRYSTAL (SI220)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength 1.00 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2VHG _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40.00 _reflns.d_resolution_high 2.90 _reflns.number_obs 13127 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 25.00 _reflns.B_iso_Wilson_estimate 67 _reflns.pdbx_redundancy 7.2 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.90 _reflns_shell.d_res_low 3.00 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.56 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.50 _reflns_shell.pdbx_redundancy 7.0 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2VHG _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 11788 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 10000 _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.0 _refine.ls_d_res_high 2.9 _refine.ls_percent_reflns_obs 90.3 _refine.ls_R_factor_obs 0.2847 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2847 _refine.ls_R_factor_R_free 0.3197 _refine.ls_R_factor_R_free_error 0.011 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 6.5 _refine.ls_number_reflns_R_free 843 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 86.2 _refine.aniso_B[1][1] -26.228 _refine.aniso_B[2][2] 17.764 _refine.aniso_B[3][3] 8.465 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol 0.221686 _refine.solvent_model_param_bsol 10 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 2A6O' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 2VHG _refine_analyze.Luzzati_coordinate_error_obs 0.5 _refine_analyze.Luzzati_sigma_a_obs 0.57 _refine_analyze.Luzzati_d_res_low_obs 5.0 _refine_analyze.Luzzati_coordinate_error_free 0.62 _refine_analyze.Luzzati_sigma_a_free 0.53 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2073 _refine_hist.pdbx_number_atoms_nucleic_acid 958 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 3032 _refine_hist.d_res_high 2.9 _refine_hist.d_res_low 40.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.0055 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.37 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 21.9 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.22 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.59 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.95 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 13.01 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 12.74 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_restr_ncs.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_restr_ncs.dom_id 1 _refine_ls_restr_ncs.ncs_model_details RESTRAINTS _refine_ls_restr_ncs.rms_dev_position ? _refine_ls_restr_ncs.weight_position ? _refine_ls_restr_ncs.rms_dev_B_iso ? _refine_ls_restr_ncs.weight_B_iso ? _refine_ls_restr_ncs.pdbx_ordinal 1 _refine_ls_restr_ncs.pdbx_type . _refine_ls_restr_ncs.pdbx_auth_asym_id . _refine_ls_restr_ncs.pdbx_ens_id 1 _refine_ls_restr_ncs.pdbx_number ? _refine_ls_restr_ncs.pdbx_asym_id ? _refine_ls_restr_ncs.pdbx_rms ? _refine_ls_restr_ncs.pdbx_weight ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.90 _refine_ls_shell.d_res_low 3.08 _refine_ls_shell.number_reflns_R_work 1359 _refine_ls_shell.R_factor_R_work 0.403 _refine_ls_shell.percent_reflns_obs 70 _refine_ls_shell.R_factor_R_free 0.445 _refine_ls_shell.R_factor_R_free_error 0.041 _refine_ls_shell.percent_reflns_R_free 7.9 _refine_ls_shell.number_reflns_R_free 117 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.details _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] 1 given ? -0.996639 0.045058 0.068410 0.050682 -0.316905 0.947102 0.064354 0.947386 0.313556 40.88390 29.46710 -23.29910 2 given ? -0.996639 0.045058 0.068410 0.050682 -0.316905 0.947102 0.064354 0.947386 0.313556 40.88390 29.46710 -23.29910 # _struct_ncs_dom.id 1 _struct_ncs_dom.details ? _struct_ncs_dom.pdbx_ens_id 1 # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 2VHG _struct.title 'Crystal Structure of the ISHp608 Transposase in Complex with Right End 31-mer DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2VHG _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' _struct_keywords.text 'HUH MOTIF, DNA STEM LOOP, TRANSPOSITION, PROTEIN-DNA COMLPEX, DNA-BINDING PROTEIN, DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 30 ? ARG A 33 ? LYS A 26 ARG A 29 5 ? 4 HELX_P HELX_P2 2 GLY A 38 ? LEU A 55 ? GLY A 34 LEU A 51 1 ? 18 HELX_P HELX_P3 3 GLY A 80 ? PHE A 100 ? GLY A 76 PHE A 96 1 ? 21 HELX_P HELX_P4 4 ASN A 101 ? LYS A 106 ? ASN A 97 LYS A 102 1 ? 6 HELX_P HELX_P5 5 VAL A 127 ? ASN A 134 ? VAL A 123 ASN A 130 1 ? 8 HELX_P HELX_P6 6 LYS B 30 ? ARG B 33 ? LYS B 26 ARG B 29 5 ? 4 HELX_P HELX_P7 7 VAL B 37 ? LEU B 55 ? VAL B 33 LEU B 51 1 ? 19 HELX_P HELX_P8 8 GLY B 80 ? PHE B 100 ? GLY B 76 PHE B 96 1 ? 21 HELX_P HELX_P9 9 ASN B 101 ? LYS B 106 ? ASN B 97 LYS B 102 1 ? 6 HELX_P HELX_P10 10 VAL B 127 ? ASN B 134 ? VAL B 123 ASN B 130 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? C DC 1 O2 ? ? ? 1_555 C DG 21 N2 ? ? C DC -31 C DG -11 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog2 hydrog ? ? C DC 1 N4 ? ? ? 1_555 C DA 22 N1 ? ? C DC -31 C DA -10 1_555 ? ? ? ? ? ? 'DC-DA MISPAIR' ? ? ? hydrog3 hydrog ? ? C DC 2 N3 ? ? ? 1_555 C DG 20 N1 ? ? C DC -30 C DG -12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C DC 2 N4 ? ? ? 1_555 C DG 20 O6 ? ? C DC -30 C DG -12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C DC 2 O2 ? ? ? 1_555 C DG 20 N2 ? ? C DC -30 C DG -12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C DC 3 N3 ? ? ? 1_555 C DG 19 N1 ? ? C DC -29 C DG -13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C DC 3 N4 ? ? ? 1_555 C DG 19 O6 ? ? C DC -29 C DG -13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C DC 3 O2 ? ? ? 1_555 C DG 19 N2 ? ? C DC -29 C DG -13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C DC 4 N3 ? ? ? 1_555 C DG 18 N1 ? ? C DC -28 C DG -14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C DC 4 N4 ? ? ? 1_555 C DG 18 O6 ? ? C DC -28 C DG -14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C DC 4 O2 ? ? ? 1_555 C DG 18 N2 ? ? C DC -28 C DG -14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C DT 5 N3 ? ? ? 1_555 C DA 16 N1 ? ? C DT -27 C DA -16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C DT 5 O4 ? ? ? 1_555 C DA 16 N6 ? ? C DT -27 C DA -16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C DA 6 N1 ? ? ? 1_555 C DT 15 N3 ? ? C DA -26 C DT -17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C DA 6 N6 ? ? ? 1_555 C DT 15 O4 ? ? C DA -26 C DT -17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C DG 7 N1 ? ? ? 1_555 C DC 14 N3 ? ? C DG -25 C DC -18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C DG 7 N2 ? ? ? 1_555 C DC 14 O2 ? ? C DG -25 C DC -18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DG 7 O6 ? ? ? 1_555 C DC 14 N4 ? ? C DG -25 C DC -18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C DC 8 N3 ? ? ? 1_555 C DG 13 N1 ? ? C DC -24 C DG -19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C DC 8 N4 ? ? ? 1_555 C DG 13 O6 ? ? C DC -24 C DG -19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C DC 8 O2 ? ? ? 1_555 C DG 13 N2 ? ? C DC -24 C DG -19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C DT 9 N3 ? ? ? 1_555 C DA 12 N7 ? ? C DT -23 C DA -20 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog23 hydrog ? ? C DT 9 O4 ? ? ? 1_555 C DA 12 N6 ? ? C DT -23 C DA -20 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog24 hydrog ? ? D DC 1 N3 ? ? ? 1_555 D DG 21 N1 ? ? D DC -31 D DG -11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? D DC 1 N4 ? ? ? 1_555 D DG 21 O6 ? ? D DC -31 D DG -11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? D DC 1 O2 ? ? ? 1_555 D DG 21 N2 ? ? D DC -31 D DG -11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? D DC 2 N3 ? ? ? 1_555 D DG 20 N1 ? ? D DC -30 D DG -12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? D DC 2 N4 ? ? ? 1_555 D DG 20 O6 ? ? D DC -30 D DG -12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? D DC 2 O2 ? ? ? 1_555 D DG 20 N2 ? ? D DC -30 D DG -12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? D DC 3 N3 ? ? ? 1_555 D DG 19 N1 ? ? D DC -29 D DG -13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? D DC 3 N4 ? ? ? 1_555 D DG 19 O6 ? ? D DC -29 D DG -13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? D DC 3 O2 ? ? ? 1_555 D DG 19 N2 ? ? D DC -29 D DG -13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? D DC 4 N3 ? ? ? 1_555 D DG 18 N1 ? ? D DC -28 D DG -14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? D DC 4 N4 ? ? ? 1_555 D DG 18 O6 ? ? D DC -28 D DG -14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? D DC 4 O2 ? ? ? 1_555 D DG 18 N2 ? ? D DC -28 D DG -14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? D DT 5 N3 ? ? ? 1_555 D DA 16 N1 ? ? D DT -27 D DA -16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? D DT 5 O4 ? ? ? 1_555 D DA 16 N6 ? ? D DT -27 D DA -16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? D DA 6 N1 ? ? ? 1_555 D DT 15 N3 ? ? D DA -26 D DT -17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? D DA 6 N6 ? ? ? 1_555 D DT 15 O4 ? ? D DA -26 D DT -17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? D DG 7 N1 ? ? ? 1_555 D DC 14 N3 ? ? D DG -25 D DC -18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? D DG 7 N2 ? ? ? 1_555 D DC 14 O2 ? ? D DG -25 D DC -18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? D DG 7 O6 ? ? ? 1_555 D DC 14 N4 ? ? D DG -25 D DC -18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? D DC 8 N3 ? ? ? 1_555 D DG 13 N1 ? ? D DC -24 D DG -19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? D DC 8 N4 ? ? ? 1_555 D DG 13 O6 ? ? D DC -24 D DG -19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? D DC 8 O2 ? ? ? 1_555 D DG 13 N2 ? ? D DC -24 D DG -19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? D DT 9 N3 ? ? ? 1_555 D DA 12 N7 ? ? D DT -23 D DA -20 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog47 hydrog ? ? D DT 9 O4 ? ? ? 1_555 D DA 12 N6 ? ? D DT -23 D DA -20 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 6 ? AB ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AA 5 6 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel AB 4 5 ? parallel AB 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LYS A 12 ? SER A 13 ? LYS A 8 SER A 9 AA 2 VAL A 17 ? SER A 20 ? VAL A 13 SER A 16 AA 3 CYS B 115 ? VAL B 120 ? CYS B 111 VAL B 116 AA 4 LYS B 22 ? TRP B 27 ? LYS B 18 TRP B 23 AA 5 HIS B 68 ? ASP B 74 ? HIS B 64 ASP B 70 AA 6 GLU B 58 ? ASP B 65 ? GLU B 54 ASP B 61 AB 1 GLU A 58 ? ASP A 65 ? GLU A 54 ASP A 61 AB 2 HIS A 68 ? ASP A 74 ? HIS A 64 ASP A 70 AB 3 LYS A 22 ? TRP A 27 ? LYS A 18 TRP A 23 AB 4 CYS A 115 ? VAL A 120 ? CYS A 111 VAL A 116 AB 5 VAL B 17 ? SER B 20 ? VAL B 13 SER B 16 AB 6 LYS B 12 ? SER B 13 ? LYS B 8 SER B 9 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N LYS A 12 ? N LYS A 8 O TYR A 19 ? O TYR A 15 AA 2 3 N VAL A 18 ? N VAL A 14 O CYS B 115 ? O CYS B 111 AA 3 4 N VAL B 120 ? N VAL B 116 O LYS B 22 ? O LYS B 18 AA 4 5 N TRP B 27 ? N TRP B 23 O ILE B 69 ? O ILE B 65 AA 5 6 N ASP B 74 ? N ASP B 70 O GLU B 58 ? O GLU B 54 AB 1 2 N ASP A 65 ? N ASP A 61 O HIS A 68 ? O HIS A 64 AB 2 3 N ALA A 73 ? N ALA A 69 O TYR A 23 ? O TYR A 19 AB 3 4 N VAL A 26 ? N VAL A 22 O PHE A 116 ? O PHE A 112 AB 4 5 N ILE A 117 ? N ILE A 113 O VAL B 18 ? O VAL B 14 AB 5 6 N TYR B 19 ? N TYR B 15 O LYS B 12 ? O LYS B 8 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'BINDING SITE FOR RESIDUE MN A1132' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 ASP A 65 ? ASP A 61 . ? 1_555 ? 2 AC1 3 HIS A 68 ? HIS A 64 . ? 1_555 ? 3 AC1 3 HIS A 70 ? HIS A 66 . ? 1_555 ? # _database_PDB_matrix.entry_id 2VHG _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2VHG _atom_sites.fract_transf_matrix[1][1] 0.015045 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010998 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010705 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MN N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 ? ? ? A . n A 1 2 SER 2 -2 ? ? ? A . n A 1 3 ALA 3 -1 ? ? ? A . n A 1 4 MET 4 0 ? ? ? A . n A 1 5 ALA 5 1 ? ? ? A . n A 1 6 SER 6 2 ? ? ? A . n A 1 7 ASN 7 3 ? ? ? A . n A 1 8 ALA 8 4 ? ? ? A . n A 1 9 VAL 9 5 ? ? ? A . n A 1 10 LEU 10 6 6 LEU LEU A . n A 1 11 TYR 11 7 7 TYR TYR A . n A 1 12 LYS 12 8 8 LYS LYS A . n A 1 13 SER 13 9 9 SER SER A . n A 1 14 ASN 14 10 10 ASN ASN A . n A 1 15 HIS 15 11 11 HIS HIS A . n A 1 16 ASN 16 12 12 ASN ASN A . n A 1 17 VAL 17 13 13 VAL VAL A . n A 1 18 VAL 18 14 14 VAL VAL A . n A 1 19 TYR 19 15 15 TYR TYR A . n A 1 20 SER 20 16 16 SER SER A . n A 1 21 CYS 21 17 17 CYS CYS A . n A 1 22 LYS 22 18 18 LYS LYS A . n A 1 23 TYR 23 19 19 TYR TYR A . n A 1 24 HIS 24 20 20 HIS HIS A . n A 1 25 ILE 25 21 21 ILE ILE A . n A 1 26 VAL 26 22 22 VAL VAL A . n A 1 27 TRP 27 23 23 TRP TRP A . n A 1 28 CYS 28 24 24 CYS CYS A . n A 1 29 PRO 29 25 25 PRO PRO A . n A 1 30 LYS 30 26 26 LYS LYS A . n A 1 31 TYR 31 27 27 TYR TYR A . n A 1 32 ARG 32 28 28 ARG ARG A . n A 1 33 ARG 33 29 29 ARG ARG A . n A 1 34 LYS 34 30 30 LYS LYS A . n A 1 35 VAL 35 31 31 VAL VAL A . n A 1 36 LEU 36 32 32 LEU LEU A . n A 1 37 VAL 37 33 33 VAL VAL A . n A 1 38 GLY 38 34 34 GLY GLY A . n A 1 39 ALA 39 35 35 ALA ALA A . n A 1 40 VAL 40 36 36 VAL VAL A . n A 1 41 GLU 41 37 37 GLU GLU A . n A 1 42 MET 42 38 38 MET MET A . n A 1 43 ARG 43 39 39 ARG ARG A . n A 1 44 LEU 44 40 40 LEU LEU A . n A 1 45 LYS 45 41 41 LYS LYS A . n A 1 46 GLU 46 42 42 GLU GLU A . n A 1 47 ILE 47 43 43 ILE ILE A . n A 1 48 ILE 48 44 44 ILE ILE A . n A 1 49 GLN 49 45 45 GLN GLN A . n A 1 50 GLU 50 46 46 GLU GLU A . n A 1 51 VAL 51 47 47 VAL VAL A . n A 1 52 ALA 52 48 48 ALA ALA A . n A 1 53 LYS 53 49 49 LYS LYS A . n A 1 54 GLU 54 50 50 GLU GLU A . n A 1 55 LEU 55 51 51 LEU LEU A . n A 1 56 ARG 56 52 52 ARG ARG A . n A 1 57 VAL 57 53 53 VAL VAL A . n A 1 58 GLU 58 54 54 GLU GLU A . n A 1 59 ILE 59 55 55 ILE ILE A . n A 1 60 ILE 60 56 56 ILE ILE A . n A 1 61 GLU 61 57 57 GLU GLU A . n A 1 62 MET 62 58 58 MET MET A . n A 1 63 GLN 63 59 59 GLN GLN A . n A 1 64 THR 64 60 60 THR THR A . n A 1 65 ASP 65 61 61 ASP ASP A . n A 1 66 LYS 66 62 62 LYS LYS A . n A 1 67 ASP 67 63 63 ASP ASP A . n A 1 68 HIS 68 64 64 HIS HIS A . n A 1 69 ILE 69 65 65 ILE ILE A . n A 1 70 HIS 70 66 66 HIS HIS A . n A 1 71 ILE 71 67 67 ILE ILE A . n A 1 72 LEU 72 68 68 LEU LEU A . n A 1 73 ALA 73 69 69 ALA ALA A . n A 1 74 ASP 74 70 70 ASP ASP A . n A 1 75 ILE 75 71 71 ILE ILE A . n A 1 76 ASP 76 72 72 ASP ASP A . n A 1 77 PRO 77 73 73 PRO PRO A . n A 1 78 SER 78 74 74 SER SER A . n A 1 79 PHE 79 75 75 PHE PHE A . n A 1 80 GLY 80 76 76 GLY GLY A . n A 1 81 VAL 81 77 77 VAL VAL A . n A 1 82 MET 82 78 78 MET MET A . n A 1 83 LYS 83 79 79 LYS LYS A . n A 1 84 PHE 84 80 80 PHE PHE A . n A 1 85 ILE 85 81 81 ILE ILE A . n A 1 86 LYS 86 82 82 LYS LYS A . n A 1 87 THR 87 83 83 THR THR A . n A 1 88 ALA 88 84 84 ALA ALA A . n A 1 89 LYS 89 85 85 LYS LYS A . n A 1 90 GLY 90 86 86 GLY GLY A . n A 1 91 ARG 91 87 87 ARG ARG A . n A 1 92 SER 92 88 88 SER SER A . n A 1 93 SER 93 89 89 SER SER A . n A 1 94 ARG 94 90 90 ARG ARG A . n A 1 95 ILE 95 91 91 ILE ILE A . n A 1 96 LEU 96 92 92 LEU LEU A . n A 1 97 ARG 97 93 93 ARG ARG A . n A 1 98 GLN 98 94 94 GLN GLN A . n A 1 99 GLU 99 95 95 GLU GLU A . n A 1 100 PHE 100 96 96 PHE PHE A . n A 1 101 ASN 101 97 97 ASN ASN A . n A 1 102 HIS 102 98 98 HIS HIS A . n A 1 103 LEU 103 99 99 LEU LEU A . n A 1 104 LYS 104 100 100 LYS LYS A . n A 1 105 THR 105 101 101 THR THR A . n A 1 106 LYS 106 102 102 LYS LYS A . n A 1 107 LEU 107 103 103 LEU LEU A . n A 1 108 PRO 108 104 104 PRO PRO A . n A 1 109 THR 109 105 105 THR THR A . n A 1 110 LEU 110 106 106 LEU LEU A . n A 1 111 TRP 111 107 107 TRP TRP A . n A 1 112 THR 112 108 108 THR THR A . n A 1 113 ASN 113 109 109 ASN ASN A . n A 1 114 SER 114 110 110 SER SER A . n A 1 115 CYS 115 111 111 CYS CYS A . n A 1 116 PHE 116 112 112 PHE PHE A . n A 1 117 ILE 117 113 113 ILE ILE A . n A 1 118 SER 118 114 114 SER SER A . n A 1 119 THR 119 115 115 THR THR A . n A 1 120 VAL 120 116 116 VAL VAL A . n A 1 121 GLY 121 117 117 GLY GLY A . n A 1 122 GLY 122 118 118 GLY GLY A . n A 1 123 ALA 123 119 119 ALA ALA A . n A 1 124 PRO 124 120 120 PRO PRO A . n A 1 125 LEU 125 121 121 LEU LEU A . n A 1 126 ASN 126 122 122 ASN ASN A . n A 1 127 VAL 127 123 123 VAL VAL A . n A 1 128 VAL 128 124 124 VAL VAL A . n A 1 129 LYS 129 125 125 LYS LYS A . n A 1 130 GLN 130 126 126 GLN GLN A . n A 1 131 TYR 131 127 127 TYR TYR A . n A 1 132 ILE 132 128 128 ILE ILE A . n A 1 133 GLU 133 129 129 GLU GLU A . n A 1 134 ASN 134 130 130 ASN ASN A . n A 1 135 GLN 135 131 131 GLN GLN A . n A 1 136 GLN 136 132 ? ? ? A . n A 1 137 ASN 137 133 ? ? ? A . n A 1 138 SER 138 134 ? ? ? A . n A 1 139 ASN 139 135 ? ? ? A . n A 1 140 ARG 140 136 ? ? ? A . n A 1 141 PRO 141 137 ? ? ? A . n A 1 142 LYS 142 138 ? ? ? A . n A 1 143 GLN 143 139 ? ? ? A . n A 1 144 LYS 144 140 ? ? ? A . n A 1 145 GLU 145 141 ? ? ? A . n A 1 146 LYS 146 142 ? ? ? A . n A 1 147 TRP 147 143 ? ? ? A . n A 1 148 LYS 148 144 ? ? ? A . n A 1 149 SER 149 145 ? ? ? A . n A 1 150 TYR 150 146 ? ? ? A . n A 1 151 VAL 151 147 ? ? ? A . n A 1 152 ASP 152 148 ? ? ? A . n A 1 153 ASN 153 149 ? ? ? A . n A 1 154 LEU 154 150 ? ? ? A . n A 1 155 GLN 155 151 ? ? ? A . n A 1 156 THR 156 152 ? ? ? A . n A 1 157 LYS 157 153 ? ? ? A . n A 1 158 ALA 158 154 ? ? ? A . n A 1 159 LEU 159 155 ? ? ? A . n B 1 1 GLY 1 -3 ? ? ? B . n B 1 2 SER 2 -2 ? ? ? B . n B 1 3 ALA 3 -1 ? ? ? B . n B 1 4 MET 4 0 ? ? ? B . n B 1 5 ALA 5 1 ? ? ? B . n B 1 6 SER 6 2 ? ? ? B . n B 1 7 ASN 7 3 ? ? ? B . n B 1 8 ALA 8 4 ? ? ? B . n B 1 9 VAL 9 5 ? ? ? B . n B 1 10 LEU 10 6 6 LEU LEU B . n B 1 11 TYR 11 7 7 TYR TYR B . n B 1 12 LYS 12 8 8 LYS LYS B . n B 1 13 SER 13 9 9 SER SER B . n B 1 14 ASN 14 10 10 ASN ASN B . n B 1 15 HIS 15 11 11 HIS HIS B . n B 1 16 ASN 16 12 12 ASN ASN B . n B 1 17 VAL 17 13 13 VAL VAL B . n B 1 18 VAL 18 14 14 VAL VAL B . n B 1 19 TYR 19 15 15 TYR TYR B . n B 1 20 SER 20 16 16 SER SER B . n B 1 21 CYS 21 17 17 CYS CYS B . n B 1 22 LYS 22 18 18 LYS LYS B . n B 1 23 TYR 23 19 19 TYR TYR B . n B 1 24 HIS 24 20 20 HIS HIS B . n B 1 25 ILE 25 21 21 ILE ILE B . n B 1 26 VAL 26 22 22 VAL VAL B . n B 1 27 TRP 27 23 23 TRP TRP B . n B 1 28 CYS 28 24 24 CYS CYS B . n B 1 29 PRO 29 25 25 PRO PRO B . n B 1 30 LYS 30 26 26 LYS LYS B . n B 1 31 TYR 31 27 27 TYR TYR B . n B 1 32 ARG 32 28 28 ARG ARG B . n B 1 33 ARG 33 29 29 ARG ARG B . n B 1 34 LYS 34 30 30 LYS LYS B . n B 1 35 VAL 35 31 31 VAL VAL B . n B 1 36 LEU 36 32 32 LEU LEU B . n B 1 37 VAL 37 33 33 VAL VAL B . n B 1 38 GLY 38 34 34 GLY GLY B . n B 1 39 ALA 39 35 35 ALA ALA B . n B 1 40 VAL 40 36 36 VAL VAL B . n B 1 41 GLU 41 37 37 GLU GLU B . n B 1 42 MET 42 38 38 MET MET B . n B 1 43 ARG 43 39 39 ARG ARG B . n B 1 44 LEU 44 40 40 LEU LEU B . n B 1 45 LYS 45 41 41 LYS LYS B . n B 1 46 GLU 46 42 42 GLU GLU B . n B 1 47 ILE 47 43 43 ILE ILE B . n B 1 48 ILE 48 44 44 ILE ILE B . n B 1 49 GLN 49 45 45 GLN GLN B . n B 1 50 GLU 50 46 46 GLU GLU B . n B 1 51 VAL 51 47 47 VAL VAL B . n B 1 52 ALA 52 48 48 ALA ALA B . n B 1 53 LYS 53 49 49 LYS LYS B . n B 1 54 GLU 54 50 50 GLU GLU B . n B 1 55 LEU 55 51 51 LEU LEU B . n B 1 56 ARG 56 52 52 ARG ARG B . n B 1 57 VAL 57 53 53 VAL VAL B . n B 1 58 GLU 58 54 54 GLU GLU B . n B 1 59 ILE 59 55 55 ILE ILE B . n B 1 60 ILE 60 56 56 ILE ILE B . n B 1 61 GLU 61 57 57 GLU GLU B . n B 1 62 MET 62 58 58 MET MET B . n B 1 63 GLN 63 59 59 GLN GLN B . n B 1 64 THR 64 60 60 THR THR B . n B 1 65 ASP 65 61 61 ASP ASP B . n B 1 66 LYS 66 62 62 LYS LYS B . n B 1 67 ASP 67 63 63 ASP ASP B . n B 1 68 HIS 68 64 64 HIS HIS B . n B 1 69 ILE 69 65 65 ILE ILE B . n B 1 70 HIS 70 66 66 HIS HIS B . n B 1 71 ILE 71 67 67 ILE ILE B . n B 1 72 LEU 72 68 68 LEU LEU B . n B 1 73 ALA 73 69 69 ALA ALA B . n B 1 74 ASP 74 70 70 ASP ASP B . n B 1 75 ILE 75 71 71 ILE ILE B . n B 1 76 ASP 76 72 72 ASP ASP B . n B 1 77 PRO 77 73 73 PRO PRO B . n B 1 78 SER 78 74 74 SER SER B . n B 1 79 PHE 79 75 75 PHE PHE B . n B 1 80 GLY 80 76 76 GLY GLY B . n B 1 81 VAL 81 77 77 VAL VAL B . n B 1 82 MET 82 78 78 MET MET B . n B 1 83 LYS 83 79 79 LYS LYS B . n B 1 84 PHE 84 80 80 PHE PHE B . n B 1 85 ILE 85 81 81 ILE ILE B . n B 1 86 LYS 86 82 82 LYS LYS B . n B 1 87 THR 87 83 83 THR THR B . n B 1 88 ALA 88 84 84 ALA ALA B . n B 1 89 LYS 89 85 85 LYS LYS B . n B 1 90 GLY 90 86 86 GLY GLY B . n B 1 91 ARG 91 87 87 ARG ARG B . n B 1 92 SER 92 88 88 SER SER B . n B 1 93 SER 93 89 89 SER SER B . n B 1 94 ARG 94 90 90 ARG ARG B . n B 1 95 ILE 95 91 91 ILE ILE B . n B 1 96 LEU 96 92 92 LEU LEU B . n B 1 97 ARG 97 93 93 ARG ARG B . n B 1 98 GLN 98 94 94 GLN GLN B . n B 1 99 GLU 99 95 95 GLU GLU B . n B 1 100 PHE 100 96 96 PHE PHE B . n B 1 101 ASN 101 97 97 ASN ASN B . n B 1 102 HIS 102 98 98 HIS HIS B . n B 1 103 LEU 103 99 99 LEU LEU B . n B 1 104 LYS 104 100 100 LYS LYS B . n B 1 105 THR 105 101 101 THR THR B . n B 1 106 LYS 106 102 102 LYS LYS B . n B 1 107 LEU 107 103 103 LEU LEU B . n B 1 108 PRO 108 104 104 PRO PRO B . n B 1 109 THR 109 105 105 THR THR B . n B 1 110 LEU 110 106 106 LEU LEU B . n B 1 111 TRP 111 107 107 TRP TRP B . n B 1 112 THR 112 108 108 THR THR B . n B 1 113 ASN 113 109 109 ASN ASN B . n B 1 114 SER 114 110 110 SER SER B . n B 1 115 CYS 115 111 111 CYS CYS B . n B 1 116 PHE 116 112 112 PHE PHE B . n B 1 117 ILE 117 113 113 ILE ILE B . n B 1 118 SER 118 114 114 SER SER B . n B 1 119 THR 119 115 115 THR THR B . n B 1 120 VAL 120 116 116 VAL VAL B . n B 1 121 GLY 121 117 117 GLY GLY B . n B 1 122 GLY 122 118 118 GLY GLY B . n B 1 123 ALA 123 119 119 ALA ALA B . n B 1 124 PRO 124 120 120 PRO PRO B . n B 1 125 LEU 125 121 121 LEU LEU B . n B 1 126 ASN 126 122 122 ASN ASN B . n B 1 127 VAL 127 123 123 VAL VAL B . n B 1 128 VAL 128 124 124 VAL VAL B . n B 1 129 LYS 129 125 125 LYS LYS B . n B 1 130 GLN 130 126 126 GLN GLN B . n B 1 131 TYR 131 127 127 TYR TYR B . n B 1 132 ILE 132 128 128 ILE ILE B . n B 1 133 GLU 133 129 129 GLU GLU B . n B 1 134 ASN 134 130 130 ASN ASN B . n B 1 135 GLN 135 131 131 GLN GLN B . n B 1 136 GLN 136 132 132 GLN GLN B . n B 1 137 ASN 137 133 ? ? ? B . n B 1 138 SER 138 134 ? ? ? B . n B 1 139 ASN 139 135 ? ? ? B . n B 1 140 ARG 140 136 ? ? ? B . n B 1 141 PRO 141 137 ? ? ? B . n B 1 142 LYS 142 138 ? ? ? B . n B 1 143 GLN 143 139 ? ? ? B . n B 1 144 LYS 144 140 ? ? ? B . n B 1 145 GLU 145 141 ? ? ? B . n B 1 146 LYS 146 142 ? ? ? B . n B 1 147 TRP 147 143 ? ? ? B . n B 1 148 LYS 148 144 ? ? ? B . n B 1 149 SER 149 145 ? ? ? B . n B 1 150 TYR 150 146 ? ? ? B . n B 1 151 VAL 151 147 ? ? ? B . n B 1 152 ASP 152 148 ? ? ? B . n B 1 153 ASN 153 149 ? ? ? B . n B 1 154 LEU 154 150 ? ? ? B . n B 1 155 GLN 155 151 ? ? ? B . n B 1 156 THR 156 152 ? ? ? B . n B 1 157 LYS 157 153 ? ? ? B . n B 1 158 ALA 158 154 ? ? ? B . n B 1 159 LEU 159 155 ? ? ? B . n C 2 1 DC 1 -31 -31 DC DC C . n C 2 2 DC 2 -30 -30 DC DC C . n C 2 3 DC 3 -29 -29 DC DC C . n C 2 4 DC 4 -28 -28 DC DC C . n C 2 5 DT 5 -27 -27 DT DT C . n C 2 6 DA 6 -26 -26 DA DA C . n C 2 7 DG 7 -25 -25 DG DG C . n C 2 8 DC 8 -24 -24 DC DC C . n C 2 9 DT 9 -23 -23 DT DT C . n C 2 10 DT 10 -22 -22 DT DT C . n C 2 11 DT 11 -21 -21 DT DT C . n C 2 12 DA 12 -20 -20 DA DA C . n C 2 13 DG 13 -19 -19 DG DG C . n C 2 14 DC 14 -18 -18 DC DC C . n C 2 15 DT 15 -17 -17 DT DT C . n C 2 16 DA 16 -16 -16 DA DA C . n C 2 17 DT 17 -15 -15 DT DT C . n C 2 18 DG 18 -14 -14 DG DG C . n C 2 19 DG 19 -13 -13 DG DG C . n C 2 20 DG 20 -12 -12 DG DG C . n C 2 21 DG 21 -11 -11 DG DG C . n C 2 22 DA 22 -10 -10 DA DA C . n C 2 23 DG 23 -9 -9 DG DG C . n C 2 24 DT 24 -8 ? ? ? C . n C 2 25 DA 25 -7 ? ? ? C . n C 2 26 DT 26 -6 ? ? ? C . n C 2 27 DG 27 -5 ? ? ? C . n C 2 28 DT 28 -4 ? ? ? C . n C 2 29 DC 29 -3 ? ? ? C . n C 2 30 DA 30 -2 ? ? ? C . n C 2 31 DA 31 -1 ? ? ? C . n D 2 1 DC 1 -31 -31 DC DC D . n D 2 2 DC 2 -30 -30 DC DC D . n D 2 3 DC 3 -29 -29 DC DC D . n D 2 4 DC 4 -28 -28 DC DC D . n D 2 5 DT 5 -27 -27 DT DT D . n D 2 6 DA 6 -26 -26 DA DA D . n D 2 7 DG 7 -25 -25 DG DG D . n D 2 8 DC 8 -24 -24 DC DC D . n D 2 9 DT 9 -23 -23 DT DT D . n D 2 10 DT 10 -22 -22 DT DT D . n D 2 11 DT 11 -21 -21 DT DT D . n D 2 12 DA 12 -20 -20 DA DA D . n D 2 13 DG 13 -19 -19 DG DG D . n D 2 14 DC 14 -18 -18 DC DC D . n D 2 15 DT 15 -17 -17 DT DT D . n D 2 16 DA 16 -16 -16 DA DA D . n D 2 17 DT 17 -15 -15 DT DT D . n D 2 18 DG 18 -14 -14 DG DG D . n D 2 19 DG 19 -13 -13 DG DG D . n D 2 20 DG 20 -12 -12 DG DG D . n D 2 21 DG 21 -11 -11 DG DG D . n D 2 22 DA 22 -10 -10 DA DA D . n D 2 23 DG 23 -9 -9 DG DG D . n D 2 24 DT 24 -8 -8 DT DT D . n D 2 25 DA 25 -7 ? ? ? D . n D 2 26 DT 26 -6 ? ? ? D . n D 2 27 DG 27 -5 ? ? ? D . n D 2 28 DT 28 -4 ? ? ? D . n D 2 29 DC 29 -3 ? ? ? D . n D 2 30 DA 30 -2 ? ? ? D . n D 2 31 DA 31 -1 ? ? ? D . n # _pdbx_nonpoly_scheme.asym_id E _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id MN _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1132 _pdbx_nonpoly_scheme.auth_seq_num 1132 _pdbx_nonpoly_scheme.pdb_mon_id MN _pdbx_nonpoly_scheme.auth_mon_id MN _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5090 ? 1 MORE -31.9 ? 1 'SSA (A^2)' 22350 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-02-19 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-12-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' Other 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_database_status 5 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.status_code_sf' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 AMoRE phasing . ? 4 # _pdbx_entry_details.entry_id 2VHG _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE ADDITION OF THE FIRST 5 RESIDUES (GSAMA) TO THE DATABASE SEQUENCE ARE THE RESULT OF CLONING ARTIFACT ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 11 ? ? -54.62 96.79 2 1 ASN A 12 ? ? 69.51 -6.54 3 1 SER A 16 ? ? -152.38 89.25 4 1 TYR A 27 ? ? 59.26 11.95 5 1 ILE A 56 ? ? -90.90 -72.62 6 1 MET A 58 ? ? -163.12 98.95 7 1 ARG A 93 ? ? -58.67 -7.87 8 1 ASN A 109 ? ? -88.94 32.38 9 1 ALA A 119 ? ? -46.61 105.27 10 1 ASN A 122 ? ? 73.35 -4.54 11 1 HIS B 11 ? ? -54.22 96.59 12 1 ASN B 12 ? ? 69.31 -7.86 13 1 ILE B 56 ? ? -91.33 -71.04 14 1 MET B 58 ? ? -164.94 97.70 15 1 ARG B 93 ? ? -58.20 -7.70 16 1 ASN B 109 ? ? -90.01 32.87 17 1 ALA B 119 ? ? -43.80 105.52 18 1 ASN B 122 ? ? 78.32 -13.10 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 TYR B 7 ? ? 0.078 'SIDE CHAIN' 2 1 DC C -24 ? ? 0.079 'SIDE CHAIN' 3 1 DC D -24 ? ? 0.092 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -3 ? A GLY 1 2 1 Y 1 A SER -2 ? A SER 2 3 1 Y 1 A ALA -1 ? A ALA 3 4 1 Y 1 A MET 0 ? A MET 4 5 1 Y 1 A ALA 1 ? A ALA 5 6 1 Y 1 A SER 2 ? A SER 6 7 1 Y 1 A ASN 3 ? A ASN 7 8 1 Y 1 A ALA 4 ? A ALA 8 9 1 Y 1 A VAL 5 ? A VAL 9 10 1 Y 1 A GLN 132 ? A GLN 136 11 1 Y 1 A ASN 133 ? A ASN 137 12 1 Y 1 A SER 134 ? A SER 138 13 1 Y 1 A ASN 135 ? A ASN 139 14 1 Y 1 A ARG 136 ? A ARG 140 15 1 Y 1 A PRO 137 ? A PRO 141 16 1 Y 1 A LYS 138 ? A LYS 142 17 1 Y 1 A GLN 139 ? A GLN 143 18 1 Y 1 A LYS 140 ? A LYS 144 19 1 Y 1 A GLU 141 ? A GLU 145 20 1 Y 1 A LYS 142 ? A LYS 146 21 1 Y 1 A TRP 143 ? A TRP 147 22 1 Y 1 A LYS 144 ? A LYS 148 23 1 Y 1 A SER 145 ? A SER 149 24 1 Y 1 A TYR 146 ? A TYR 150 25 1 Y 1 A VAL 147 ? A VAL 151 26 1 Y 1 A ASP 148 ? A ASP 152 27 1 Y 1 A ASN 149 ? A ASN 153 28 1 Y 1 A LEU 150 ? A LEU 154 29 1 Y 1 A GLN 151 ? A GLN 155 30 1 Y 1 A THR 152 ? A THR 156 31 1 Y 1 A LYS 153 ? A LYS 157 32 1 Y 1 A ALA 154 ? A ALA 158 33 1 Y 1 A LEU 155 ? A LEU 159 34 1 Y 1 B GLY -3 ? B GLY 1 35 1 Y 1 B SER -2 ? B SER 2 36 1 Y 1 B ALA -1 ? B ALA 3 37 1 Y 1 B MET 0 ? B MET 4 38 1 Y 1 B ALA 1 ? B ALA 5 39 1 Y 1 B SER 2 ? B SER 6 40 1 Y 1 B ASN 3 ? B ASN 7 41 1 Y 1 B ALA 4 ? B ALA 8 42 1 Y 1 B VAL 5 ? B VAL 9 43 1 Y 1 B ASN 133 ? B ASN 137 44 1 Y 1 B SER 134 ? B SER 138 45 1 Y 1 B ASN 135 ? B ASN 139 46 1 Y 1 B ARG 136 ? B ARG 140 47 1 Y 1 B PRO 137 ? B PRO 141 48 1 Y 1 B LYS 138 ? B LYS 142 49 1 Y 1 B GLN 139 ? B GLN 143 50 1 Y 1 B LYS 140 ? B LYS 144 51 1 Y 1 B GLU 141 ? B GLU 145 52 1 Y 1 B LYS 142 ? B LYS 146 53 1 Y 1 B TRP 143 ? B TRP 147 54 1 Y 1 B LYS 144 ? B LYS 148 55 1 Y 1 B SER 145 ? B SER 149 56 1 Y 1 B TYR 146 ? B TYR 150 57 1 Y 1 B VAL 147 ? B VAL 151 58 1 Y 1 B ASP 148 ? B ASP 152 59 1 Y 1 B ASN 149 ? B ASN 153 60 1 Y 1 B LEU 150 ? B LEU 154 61 1 Y 1 B GLN 151 ? B GLN 155 62 1 Y 1 B THR 152 ? B THR 156 63 1 Y 1 B LYS 153 ? B LYS 157 64 1 Y 1 B ALA 154 ? B ALA 158 65 1 Y 1 B LEU 155 ? B LEU 159 66 1 Y 1 C DT -8 ? C DT 24 67 1 Y 1 C DA -7 ? C DA 25 68 1 Y 1 C DT -6 ? C DT 26 69 1 Y 1 C DG -5 ? C DG 27 70 1 Y 1 C DT -4 ? C DT 28 71 1 Y 1 C DC -3 ? C DC 29 72 1 Y 1 C DA -2 ? C DA 30 73 1 Y 1 C DA -1 ? C DA 31 74 1 Y 1 D DA -7 ? D DA 25 75 1 Y 1 D DT -6 ? D DT 26 76 1 Y 1 D DG -5 ? D DG 27 77 1 Y 1 D DT -4 ? D DT 28 78 1 Y 1 D DC -3 ? D DC 29 79 1 Y 1 D DA -2 ? D DA 30 80 1 Y 1 D DA -1 ? D DA 31 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 ILE N N N N 301 ILE CA C N S 302 ILE C C N N 303 ILE O O N N 304 ILE CB C N S 305 ILE CG1 C N N 306 ILE CG2 C N N 307 ILE CD1 C N N 308 ILE OXT O N N 309 ILE H H N N 310 ILE H2 H N N 311 ILE HA H N N 312 ILE HB H N N 313 ILE HG12 H N N 314 ILE HG13 H N N 315 ILE HG21 H N N 316 ILE HG22 H N N 317 ILE HG23 H N N 318 ILE HD11 H N N 319 ILE HD12 H N N 320 ILE HD13 H N N 321 ILE HXT H N N 322 LEU N N N N 323 LEU CA C N S 324 LEU C C N N 325 LEU O O N N 326 LEU CB C N N 327 LEU CG C N N 328 LEU CD1 C N N 329 LEU CD2 C N N 330 LEU OXT O N N 331 LEU H H N N 332 LEU H2 H N N 333 LEU HA H N N 334 LEU HB2 H N N 335 LEU HB3 H N N 336 LEU HG H N N 337 LEU HD11 H N N 338 LEU HD12 H N N 339 LEU HD13 H N N 340 LEU HD21 H N N 341 LEU HD22 H N N 342 LEU HD23 H N N 343 LEU HXT H N N 344 LYS N N N N 345 LYS CA C N S 346 LYS C C N N 347 LYS O O N N 348 LYS CB C N N 349 LYS CG C N N 350 LYS CD C N N 351 LYS CE C N N 352 LYS NZ N N N 353 LYS OXT O N N 354 LYS H H N N 355 LYS H2 H N N 356 LYS HA H N N 357 LYS HB2 H N N 358 LYS HB3 H N N 359 LYS HG2 H N N 360 LYS HG3 H N N 361 LYS HD2 H N N 362 LYS HD3 H N N 363 LYS HE2 H N N 364 LYS HE3 H N N 365 LYS HZ1 H N N 366 LYS HZ2 H N N 367 LYS HZ3 H N N 368 LYS HXT H N N 369 MET N N N N 370 MET CA C N S 371 MET C C N N 372 MET O O N N 373 MET CB C N N 374 MET CG C N N 375 MET SD S N N 376 MET CE C N N 377 MET OXT O N N 378 MET H H N N 379 MET H2 H N N 380 MET HA H N N 381 MET HB2 H N N 382 MET HB3 H N N 383 MET HG2 H N N 384 MET HG3 H N N 385 MET HE1 H N N 386 MET HE2 H N N 387 MET HE3 H N N 388 MET HXT H N N 389 MN MN MN N N 390 PHE N N N N 391 PHE CA C N S 392 PHE C C N N 393 PHE O O N N 394 PHE CB C N N 395 PHE CG C Y N 396 PHE CD1 C Y N 397 PHE CD2 C Y N 398 PHE CE1 C Y N 399 PHE CE2 C Y N 400 PHE CZ C Y N 401 PHE OXT O N N 402 PHE H H N N 403 PHE H2 H N N 404 PHE HA H N N 405 PHE HB2 H N N 406 PHE HB3 H N N 407 PHE HD1 H N N 408 PHE HD2 H N N 409 PHE HE1 H N N 410 PHE HE2 H N N 411 PHE HZ H N N 412 PHE HXT H N N 413 PRO N N N N 414 PRO CA C N S 415 PRO C C N N 416 PRO O O N N 417 PRO CB C N N 418 PRO CG C N N 419 PRO CD C N N 420 PRO OXT O N N 421 PRO H H N N 422 PRO HA H N N 423 PRO HB2 H N N 424 PRO HB3 H N N 425 PRO HG2 H N N 426 PRO HG3 H N N 427 PRO HD2 H N N 428 PRO HD3 H N N 429 PRO HXT H N N 430 SER N N N N 431 SER CA C N S 432 SER C C N N 433 SER O O N N 434 SER CB C N N 435 SER OG O N N 436 SER OXT O N N 437 SER H H N N 438 SER H2 H N N 439 SER HA H N N 440 SER HB2 H N N 441 SER HB3 H N N 442 SER HG H N N 443 SER HXT H N N 444 THR N N N N 445 THR CA C N S 446 THR C C N N 447 THR O O N N 448 THR CB C N R 449 THR OG1 O N N 450 THR CG2 C N N 451 THR OXT O N N 452 THR H H N N 453 THR H2 H N N 454 THR HA H N N 455 THR HB H N N 456 THR HG1 H N N 457 THR HG21 H N N 458 THR HG22 H N N 459 THR HG23 H N N 460 THR HXT H N N 461 TRP N N N N 462 TRP CA C N S 463 TRP C C N N 464 TRP O O N N 465 TRP CB C N N 466 TRP CG C Y N 467 TRP CD1 C Y N 468 TRP CD2 C Y N 469 TRP NE1 N Y N 470 TRP CE2 C Y N 471 TRP CE3 C Y N 472 TRP CZ2 C Y N 473 TRP CZ3 C Y N 474 TRP CH2 C Y N 475 TRP OXT O N N 476 TRP H H N N 477 TRP H2 H N N 478 TRP HA H N N 479 TRP HB2 H N N 480 TRP HB3 H N N 481 TRP HD1 H N N 482 TRP HE1 H N N 483 TRP HE3 H N N 484 TRP HZ2 H N N 485 TRP HZ3 H N N 486 TRP HH2 H N N 487 TRP HXT H N N 488 TYR N N N N 489 TYR CA C N S 490 TYR C C N N 491 TYR O O N N 492 TYR CB C N N 493 TYR CG C Y N 494 TYR CD1 C Y N 495 TYR CD2 C Y N 496 TYR CE1 C Y N 497 TYR CE2 C Y N 498 TYR CZ C Y N 499 TYR OH O N N 500 TYR OXT O N N 501 TYR H H N N 502 TYR H2 H N N 503 TYR HA H N N 504 TYR HB2 H N N 505 TYR HB3 H N N 506 TYR HD1 H N N 507 TYR HD2 H N N 508 TYR HE1 H N N 509 TYR HE2 H N N 510 TYR HH H N N 511 TYR HXT H N N 512 VAL N N N N 513 VAL CA C N S 514 VAL C C N N 515 VAL O O N N 516 VAL CB C N N 517 VAL CG1 C N N 518 VAL CG2 C N N 519 VAL OXT O N N 520 VAL H H N N 521 VAL H2 H N N 522 VAL HA H N N 523 VAL HB H N N 524 VAL HG11 H N N 525 VAL HG12 H N N 526 VAL HG13 H N N 527 VAL HG21 H N N 528 VAL HG22 H N N 529 VAL HG23 H N N 530 VAL HXT H N N 531 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 ILE N CA sing N N 299 ILE N H sing N N 300 ILE N H2 sing N N 301 ILE CA C sing N N 302 ILE CA CB sing N N 303 ILE CA HA sing N N 304 ILE C O doub N N 305 ILE C OXT sing N N 306 ILE CB CG1 sing N N 307 ILE CB CG2 sing N N 308 ILE CB HB sing N N 309 ILE CG1 CD1 sing N N 310 ILE CG1 HG12 sing N N 311 ILE CG1 HG13 sing N N 312 ILE CG2 HG21 sing N N 313 ILE CG2 HG22 sing N N 314 ILE CG2 HG23 sing N N 315 ILE CD1 HD11 sing N N 316 ILE CD1 HD12 sing N N 317 ILE CD1 HD13 sing N N 318 ILE OXT HXT sing N N 319 LEU N CA sing N N 320 LEU N H sing N N 321 LEU N H2 sing N N 322 LEU CA C sing N N 323 LEU CA CB sing N N 324 LEU CA HA sing N N 325 LEU C O doub N N 326 LEU C OXT sing N N 327 LEU CB CG sing N N 328 LEU CB HB2 sing N N 329 LEU CB HB3 sing N N 330 LEU CG CD1 sing N N 331 LEU CG CD2 sing N N 332 LEU CG HG sing N N 333 LEU CD1 HD11 sing N N 334 LEU CD1 HD12 sing N N 335 LEU CD1 HD13 sing N N 336 LEU CD2 HD21 sing N N 337 LEU CD2 HD22 sing N N 338 LEU CD2 HD23 sing N N 339 LEU OXT HXT sing N N 340 LYS N CA sing N N 341 LYS N H sing N N 342 LYS N H2 sing N N 343 LYS CA C sing N N 344 LYS CA CB sing N N 345 LYS CA HA sing N N 346 LYS C O doub N N 347 LYS C OXT sing N N 348 LYS CB CG sing N N 349 LYS CB HB2 sing N N 350 LYS CB HB3 sing N N 351 LYS CG CD sing N N 352 LYS CG HG2 sing N N 353 LYS CG HG3 sing N N 354 LYS CD CE sing N N 355 LYS CD HD2 sing N N 356 LYS CD HD3 sing N N 357 LYS CE NZ sing N N 358 LYS CE HE2 sing N N 359 LYS CE HE3 sing N N 360 LYS NZ HZ1 sing N N 361 LYS NZ HZ2 sing N N 362 LYS NZ HZ3 sing N N 363 LYS OXT HXT sing N N 364 MET N CA sing N N 365 MET N H sing N N 366 MET N H2 sing N N 367 MET CA C sing N N 368 MET CA CB sing N N 369 MET CA HA sing N N 370 MET C O doub N N 371 MET C OXT sing N N 372 MET CB CG sing N N 373 MET CB HB2 sing N N 374 MET CB HB3 sing N N 375 MET CG SD sing N N 376 MET CG HG2 sing N N 377 MET CG HG3 sing N N 378 MET SD CE sing N N 379 MET CE HE1 sing N N 380 MET CE HE2 sing N N 381 MET CE HE3 sing N N 382 MET OXT HXT sing N N 383 PHE N CA sing N N 384 PHE N H sing N N 385 PHE N H2 sing N N 386 PHE CA C sing N N 387 PHE CA CB sing N N 388 PHE CA HA sing N N 389 PHE C O doub N N 390 PHE C OXT sing N N 391 PHE CB CG sing N N 392 PHE CB HB2 sing N N 393 PHE CB HB3 sing N N 394 PHE CG CD1 doub Y N 395 PHE CG CD2 sing Y N 396 PHE CD1 CE1 sing Y N 397 PHE CD1 HD1 sing N N 398 PHE CD2 CE2 doub Y N 399 PHE CD2 HD2 sing N N 400 PHE CE1 CZ doub Y N 401 PHE CE1 HE1 sing N N 402 PHE CE2 CZ sing Y N 403 PHE CE2 HE2 sing N N 404 PHE CZ HZ sing N N 405 PHE OXT HXT sing N N 406 PRO N CA sing N N 407 PRO N CD sing N N 408 PRO N H sing N N 409 PRO CA C sing N N 410 PRO CA CB sing N N 411 PRO CA HA sing N N 412 PRO C O doub N N 413 PRO C OXT sing N N 414 PRO CB CG sing N N 415 PRO CB HB2 sing N N 416 PRO CB HB3 sing N N 417 PRO CG CD sing N N 418 PRO CG HG2 sing N N 419 PRO CG HG3 sing N N 420 PRO CD HD2 sing N N 421 PRO CD HD3 sing N N 422 PRO OXT HXT sing N N 423 SER N CA sing N N 424 SER N H sing N N 425 SER N H2 sing N N 426 SER CA C sing N N 427 SER CA CB sing N N 428 SER CA HA sing N N 429 SER C O doub N N 430 SER C OXT sing N N 431 SER CB OG sing N N 432 SER CB HB2 sing N N 433 SER CB HB3 sing N N 434 SER OG HG sing N N 435 SER OXT HXT sing N N 436 THR N CA sing N N 437 THR N H sing N N 438 THR N H2 sing N N 439 THR CA C sing N N 440 THR CA CB sing N N 441 THR CA HA sing N N 442 THR C O doub N N 443 THR C OXT sing N N 444 THR CB OG1 sing N N 445 THR CB CG2 sing N N 446 THR CB HB sing N N 447 THR OG1 HG1 sing N N 448 THR CG2 HG21 sing N N 449 THR CG2 HG22 sing N N 450 THR CG2 HG23 sing N N 451 THR OXT HXT sing N N 452 TRP N CA sing N N 453 TRP N H sing N N 454 TRP N H2 sing N N 455 TRP CA C sing N N 456 TRP CA CB sing N N 457 TRP CA HA sing N N 458 TRP C O doub N N 459 TRP C OXT sing N N 460 TRP CB CG sing N N 461 TRP CB HB2 sing N N 462 TRP CB HB3 sing N N 463 TRP CG CD1 doub Y N 464 TRP CG CD2 sing Y N 465 TRP CD1 NE1 sing Y N 466 TRP CD1 HD1 sing N N 467 TRP CD2 CE2 doub Y N 468 TRP CD2 CE3 sing Y N 469 TRP NE1 CE2 sing Y N 470 TRP NE1 HE1 sing N N 471 TRP CE2 CZ2 sing Y N 472 TRP CE3 CZ3 doub Y N 473 TRP CE3 HE3 sing N N 474 TRP CZ2 CH2 doub Y N 475 TRP CZ2 HZ2 sing N N 476 TRP CZ3 CH2 sing Y N 477 TRP CZ3 HZ3 sing N N 478 TRP CH2 HH2 sing N N 479 TRP OXT HXT sing N N 480 TYR N CA sing N N 481 TYR N H sing N N 482 TYR N H2 sing N N 483 TYR CA C sing N N 484 TYR CA CB sing N N 485 TYR CA HA sing N N 486 TYR C O doub N N 487 TYR C OXT sing N N 488 TYR CB CG sing N N 489 TYR CB HB2 sing N N 490 TYR CB HB3 sing N N 491 TYR CG CD1 doub Y N 492 TYR CG CD2 sing Y N 493 TYR CD1 CE1 sing Y N 494 TYR CD1 HD1 sing N N 495 TYR CD2 CE2 doub Y N 496 TYR CD2 HD2 sing N N 497 TYR CE1 CZ doub Y N 498 TYR CE1 HE1 sing N N 499 TYR CE2 CZ sing Y N 500 TYR CE2 HE2 sing N N 501 TYR CZ OH sing N N 502 TYR OH HH sing N N 503 TYR OXT HXT sing N N 504 VAL N CA sing N N 505 VAL N H sing N N 506 VAL N H2 sing N N 507 VAL CA C sing N N 508 VAL CA CB sing N N 509 VAL CA HA sing N N 510 VAL C O doub N N 511 VAL C OXT sing N N 512 VAL CB CG1 sing N N 513 VAL CB CG2 sing N N 514 VAL CB HB sing N N 515 VAL CG1 HG11 sing N N 516 VAL CG1 HG12 sing N N 517 VAL CG1 HG13 sing N N 518 VAL CG2 HG21 sing N N 519 VAL CG2 HG22 sing N N 520 VAL CG2 HG23 sing N N 521 VAL OXT HXT sing N N 522 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2VHG 'double helix' 2VHG 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DC 1 1_555 C DG 21 1_555 0.994 -0.480 -1.516 -15.325 39.876 -0.642 1 C_DC-31:DG-11_C C -31 ? C -11 ? ? 1 1 C DC 2 1_555 C DG 20 1_555 0.220 -0.105 -0.618 -3.794 -6.673 -2.345 2 C_DC-30:DG-12_C C -30 ? C -12 ? 19 1 1 C DC 3 1_555 C DG 19 1_555 0.593 -0.387 -0.775 4.364 -6.392 -1.942 3 C_DC-29:DG-13_C C -29 ? C -13 ? 19 1 1 C DC 4 1_555 C DG 18 1_555 -0.300 0.301 0.178 -13.114 6.906 -2.110 4 C_DC-28:DG-14_C C -28 ? C -14 ? 19 1 1 C DT 5 1_555 C DA 16 1_555 0.018 -0.206 -0.203 -2.409 -7.095 8.864 5 C_DT-27:DA-16_C C -27 ? C -16 ? 20 1 1 C DA 6 1_555 C DT 15 1_555 0.554 -0.245 0.337 -2.587 -1.801 -3.648 6 C_DA-26:DT-17_C C -26 ? C -17 ? 20 1 1 C DG 7 1_555 C DC 14 1_555 0.236 -0.110 -0.248 -8.014 -0.941 -1.138 7 C_DG-25:DC-18_C C -25 ? C -18 ? 19 1 1 C DC 8 1_555 C DG 13 1_555 0.418 -0.014 0.210 -6.706 6.135 5.036 8 C_DC-24:DG-19_C C -24 ? C -19 ? 19 1 1 C DT 9 1_555 C DA 12 1_555 -0.121 3.170 -0.053 17.611 -14.641 -67.881 9 C_DT-23:DA-20_C C -23 ? C -20 ? 23 3 1 D DC 1 1_555 D DG 21 1_555 0.499 -0.363 -0.985 -13.557 20.881 -12.835 10 D_DC-31:DG-11_D D -31 ? D -11 ? 19 1 1 D DC 2 1_555 D DG 20 1_555 0.199 -0.199 -0.337 -5.422 -3.605 -1.886 11 D_DC-30:DG-12_D D -30 ? D -12 ? 19 1 1 D DC 3 1_555 D DG 19 1_555 0.582 -0.363 -0.787 4.888 -6.520 -1.897 12 D_DC-29:DG-13_D D -29 ? D -13 ? 19 1 1 D DC 4 1_555 D DG 18 1_555 -0.294 0.297 0.175 -13.261 7.690 -1.960 13 D_DC-28:DG-14_D D -28 ? D -14 ? 19 1 1 D DT 5 1_555 D DA 16 1_555 -0.034 -0.209 -0.058 -0.216 -6.186 8.507 14 D_DT-27:DA-16_D D -27 ? D -16 ? 20 1 1 D DA 6 1_555 D DT 15 1_555 0.618 -0.297 0.242 -0.745 -2.176 -4.585 15 D_DA-26:DT-17_D D -26 ? D -17 ? 20 1 1 D DG 7 1_555 D DC 14 1_555 0.236 -0.212 -0.178 -6.690 -0.678 -0.957 16 D_DG-25:DC-18_D D -25 ? D -18 ? 19 1 1 D DC 8 1_555 D DG 13 1_555 0.381 0.007 0.288 -6.388 3.128 5.171 17 D_DC-24:DG-19_D D -24 ? D -19 ? 19 1 1 D DT 9 1_555 D DA 12 1_555 -0.118 3.139 0.075 16.835 -13.289 -67.541 18 D_DT-23:DA-20_D D -23 ? D -20 ? 23 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DC 1 1_555 C DG 21 1_555 C DC 2 1_555 C DG 20 1_555 -1.396 -0.312 3.970 -2.665 -14.428 29.666 2.530 1.888 3.819 -26.254 4.849 33.023 1 CC_DC-31DC-30:DG-12DG-11_CC C -31 ? C -11 ? C -30 ? C -12 ? 1 C DC 2 1_555 C DG 20 1_555 C DC 3 1_555 C DG 19 1_555 -0.601 0.897 3.408 -1.350 1.315 37.533 1.213 0.749 3.455 2.042 2.096 37.579 2 CC_DC-30DC-29:DG-13DG-12_CC C -30 ? C -12 ? C -29 ? C -13 ? 1 C DC 3 1_555 C DG 19 1_555 C DC 4 1_555 C DG 18 1_555 -0.114 -1.329 3.868 -11.720 4.389 32.557 -3.000 -1.891 3.499 7.492 20.007 34.818 3 CC_DC-29DC-28:DG-14DG-13_CC C -29 ? C -13 ? C -28 ? C -14 ? 1 C DC 4 1_555 C DG 18 1_555 C DT 5 1_555 C DA 16 1_555 -0.544 -0.661 2.949 4.382 0.651 26.999 -1.541 2.113 2.811 1.383 -9.306 27.353 4 CC_DC-28DT-27:DA-16DG-14_CC C -28 ? C -14 ? C -27 ? C -16 ? 1 C DT 5 1_555 C DA 16 1_555 C DA 6 1_555 C DT 15 1_555 -0.444 0.247 3.341 -9.106 2.039 39.910 0.121 -0.400 3.366 2.939 13.124 40.943 5 CC_DT-27DA-26:DT-17DA-16_CC C -27 ? C -16 ? C -26 ? C -17 ? 1 C DA 6 1_555 C DT 15 1_555 C DG 7 1_555 C DC 14 1_555 0.464 -1.048 3.544 4.112 4.640 34.984 -2.446 -0.117 3.412 7.644 -6.774 35.512 6 CC_DA-26DG-25:DC-18DT-17_CC C -26 ? C -17 ? C -25 ? C -18 ? 1 C DG 7 1_555 C DC 14 1_555 C DC 8 1_555 C DG 13 1_555 0.896 -0.625 3.069 -1.143 9.515 30.982 -2.641 -1.790 2.728 17.299 2.079 32.396 7 CC_DG-25DC-24:DG-19DC-18_CC C -25 ? C -18 ? C -24 ? C -19 ? 1 C DC 8 1_555 C DG 13 1_555 C DT 9 1_555 C DA 12 1_555 0.887 -2.140 3.031 -6.698 0.470 69.323 -1.890 -0.998 2.933 0.413 5.875 69.607 8 CC_DC-24DT-23:DA-20DG-19_CC C -24 ? C -19 ? C -23 ? C -20 ? 1 D DC 1 1_555 D DG 21 1_555 D DC 2 1_555 D DG 20 1_555 0.462 -0.565 3.386 -0.534 1.284 30.899 -1.315 -0.972 3.352 2.408 1.002 30.929 9 DD_DC-31DC-30:DG-12DG-11_DD D -31 ? D -11 ? D -30 ? D -12 ? 1 D DC 2 1_555 D DG 20 1_555 D DC 3 1_555 D DG 19 1_555 -0.598 0.967 3.205 -1.176 -0.435 37.254 1.570 0.782 3.211 -0.681 1.840 37.274 10 DD_DC-30DC-29:DG-13DG-12_DD D -30 ? D -12 ? D -29 ? D -13 ? 1 D DC 3 1_555 D DG 19 1_555 D DC 4 1_555 D DG 18 1_555 -0.096 -1.328 3.893 -11.537 4.292 32.719 -2.978 -1.892 3.529 7.305 19.634 34.899 11 DD_DC-29DC-28:DG-14DG-13_DD D -29 ? D -13 ? D -28 ? D -14 ? 1 D DC 4 1_555 D DG 18 1_555 D DT 5 1_555 D DA 16 1_555 -0.488 -0.709 2.917 3.437 -0.153 26.567 -1.495 1.839 2.836 -0.332 -7.439 26.785 12 DD_DC-28DT-27:DA-16DG-14_DD D -28 ? D -14 ? D -27 ? D -16 ? 1 D DT 5 1_555 D DA 16 1_555 D DA 6 1_555 D DT 15 1_555 -0.450 0.227 3.363 -6.635 2.369 40.756 0.057 -0.103 3.399 3.371 9.441 41.334 13 DD_DT-27DA-26:DT-17DA-16_DD D -27 ? D -16 ? D -26 ? D -17 ? 1 D DA 6 1_555 D DT 15 1_555 D DG 7 1_555 D DC 14 1_555 0.491 -1.035 3.503 3.189 5.196 34.284 -2.566 -0.308 3.346 8.729 -5.357 34.806 14 DD_DA-26DG-25:DC-18DT-17_DD D -26 ? D -17 ? D -25 ? D -18 ? 1 D DG 7 1_555 D DC 14 1_555 D DC 8 1_555 D DG 13 1_555 0.921 -0.687 3.103 -1.161 8.700 31.022 -2.660 -1.850 2.778 15.871 2.118 32.211 15 DD_DG-25DC-24:DG-19DC-18_DD D -25 ? D -18 ? D -24 ? D -19 ? 1 D DC 8 1_555 D DG 13 1_555 D DT 9 1_555 D DA 12 1_555 0.865 -2.187 3.065 -7.289 0.832 69.712 -1.932 -0.992 2.951 0.726 6.359 70.048 16 DD_DC-24DT-23:DA-20DG-19_DD D -24 ? D -19 ? D -23 ? D -20 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 'MANGANESE (II) ION' _pdbx_entity_nonpoly.comp_id MN # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2A6O _pdbx_initial_refinement_model.details 'PDB ENTRY 2A6O' #