HEADER OXIDOREDUCTASE 26-NOV-07 2VHY TITLE CRYSTAL STRUCTURE OF APO L-ALANINE DEHYDROGENASE FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALANINE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 40 KDA ANTIGEN, TB43; COMPND 5 EC: 1.4.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET26 KEYWDS NAD, SECRETED, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.AGREN,G.SCHNEIDER REVDAT 5 13-DEC-23 2VHY 1 REMARK REVDAT 4 17-JAN-18 2VHY 1 REMARK REVDAT 3 24-FEB-09 2VHY 1 VERSN REVDAT 2 11-NOV-08 2VHY 1 JRNL REMARK REVDAT 1 11-MAR-08 2VHY 0 JRNL AUTH D.AGREN,M.STEHR,C.L.BERTHOLD,S.KAPOOR,W.OEHLMANN,M.SINGH, JRNL AUTH 2 G.SCHNEIDER JRNL TITL THREE-DIMENSIONAL STRUCTURES OF APO- AND HOLO-L-ALANINE JRNL TITL 2 DEHYDROGENASE FROM MYCOBACTERIUM TUBERCULOSIS REVEAL JRNL TITL 3 CONFORMATIONAL CHANGES UPON COENZYME BINDING. JRNL REF J.MOL.BIOL. V. 377 1161 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18304579 JRNL DOI 10.1016/J.JMB.2008.01.091 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : LEAST SQUARES RESIDUAL FOR HEMIHEDRAL REMARK 3 TWINNING REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 48604 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM BUT WITH TWIN RELATED REMARK 3 REFLECTIONS IN SAME SET REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 2332 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.40 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4295 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4796 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 48 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.97200 REMARK 3 B22 (A**2) : -0.97200 REMARK 3 B33 (A**2) : 1.94400 REMARK 3 B12 (A**2) : -7.21200 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.396 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 50.23 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE PROTOCOLL FOR HEMIHEDRALLY TWINNED REMARK 3 DATA WAS USED. THE R-VALUES ARE FOR TWINNED DATA. RESIDUES A239- REMARK 3 A258, A269-A294, A297-A301, B242-B255, B268- B293 AND B298-B301 REMARK 3 ARE REMOVED FROM THE MODEL SINCE THERE IS NO DENSITY FOR THESE REMARK 3 RESIDUES. REMARK 4 REMARK 4 2VHY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1290034568. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : RH-COATED TOROIDAL SI MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47413 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.900 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1PJC REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4M AMMONIUM BICARBONATE. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 20770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 84810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -149.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -73.55500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 127.40100 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -147.11000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2001 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 240 REMARK 465 VAL A 241 REMARK 465 PRO A 242 REMARK 465 GLY A 243 REMARK 465 ALA A 244 REMARK 465 LYS A 245 REMARK 465 ALA A 246 REMARK 465 PRO A 247 REMARK 465 LYS A 248 REMARK 465 LEU A 249 REMARK 465 VAL A 250 REMARK 465 SER A 251 REMARK 465 ASN A 252 REMARK 465 SER A 253 REMARK 465 LEU A 254 REMARK 465 VAL A 255 REMARK 465 ALA A 256 REMARK 465 HIS A 257 REMARK 465 ILE A 269 REMARK 465 ASP A 270 REMARK 465 GLN A 271 REMARK 465 GLY A 272 REMARK 465 GLY A 273 REMARK 465 CYS A 274 REMARK 465 PHE A 275 REMARK 465 GLU A 276 REMARK 465 GLY A 277 REMARK 465 SER A 278 REMARK 465 ARG A 279 REMARK 465 PRO A 280 REMARK 465 THR A 281 REMARK 465 THR A 282 REMARK 465 TYR A 283 REMARK 465 ASP A 284 REMARK 465 HIS A 285 REMARK 465 PRO A 286 REMARK 465 THR A 287 REMARK 465 PHE A 288 REMARK 465 ALA A 289 REMARK 465 VAL A 290 REMARK 465 HIS A 291 REMARK 465 ASP A 292 REMARK 465 THR A 293 REMARK 465 VAL A 298 REMARK 465 ALA A 299 REMARK 465 ASN A 300 REMARK 465 HIS A 372 REMARK 465 HIS A 373 REMARK 465 HIS A 374 REMARK 465 HIS A 375 REMARK 465 HIS A 376 REMARK 465 HIS A 377 REMARK 465 PRO B 242 REMARK 465 GLY B 243 REMARK 465 ALA B 244 REMARK 465 LYS B 245 REMARK 465 ALA B 246 REMARK 465 PRO B 247 REMARK 465 LYS B 248 REMARK 465 LEU B 249 REMARK 465 VAL B 250 REMARK 465 SER B 251 REMARK 465 ASN B 252 REMARK 465 SER B 253 REMARK 465 LEU B 254 REMARK 465 ALA B 268 REMARK 465 ILE B 269 REMARK 465 ASP B 270 REMARK 465 GLN B 271 REMARK 465 GLY B 272 REMARK 465 GLY B 273 REMARK 465 CYS B 274 REMARK 465 PHE B 275 REMARK 465 GLU B 276 REMARK 465 GLY B 277 REMARK 465 SER B 278 REMARK 465 ARG B 279 REMARK 465 PRO B 280 REMARK 465 THR B 281 REMARK 465 THR B 282 REMARK 465 TYR B 283 REMARK 465 ASP B 284 REMARK 465 HIS B 285 REMARK 465 PRO B 286 REMARK 465 THR B 287 REMARK 465 PHE B 288 REMARK 465 ALA B 289 REMARK 465 VAL B 290 REMARK 465 HIS B 291 REMARK 465 ASP B 292 REMARK 465 VAL B 298 REMARK 465 ALA B 299 REMARK 465 ASN B 300 REMARK 465 HIS B 373 REMARK 465 HIS B 374 REMARK 465 HIS B 375 REMARK 465 HIS B 376 REMARK 465 HIS B 377 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 371 CA C O CB REMARK 470 HIS B 372 CA C O CB CG ND1 CD2 REMARK 470 HIS B 372 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 337 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 51 -76.02 -63.27 REMARK 500 ALA A 52 56.98 -67.95 REMARK 500 ALA A 53 -8.12 -153.82 REMARK 500 ALA A 68 111.90 -31.22 REMARK 500 ALA A 80 7.63 -68.11 REMARK 500 ASP A 124 4.20 -57.03 REMARK 500 PRO A 164 132.99 -38.61 REMARK 500 ALA A 238 44.92 -106.73 REMARK 500 TYR A 296 125.12 -179.07 REMARK 500 SER A 335 23.51 -76.88 REMARK 500 ASN A 336 91.20 -165.54 REMARK 500 GLU A 347 40.20 34.87 REMARK 500 SER A 352 110.71 -178.02 REMARK 500 THR A 357 24.77 -79.40 REMARK 500 GLU A 365 106.45 -51.13 REMARK 500 LEU A 370 50.72 -92.77 REMARK 500 THR B 27 -73.23 -59.37 REMARK 500 ARG B 28 35.43 -68.11 REMARK 500 ASP B 67 -0.15 74.40 REMARK 500 ILE B 78 -167.12 -100.49 REMARK 500 LEU B 85 106.47 -48.97 REMARK 500 THR B 93 -174.05 -172.38 REMARK 500 ASP B 124 20.64 -68.41 REMARK 500 CYS B 212 48.58 38.07 REMARK 500 ALA B 232 145.55 -38.31 REMARK 500 ALA B 256 151.47 164.11 REMARK 500 MET B 258 -165.81 -103.62 REMARK 500 LYS B 341 -3.45 -58.86 REMARK 500 HIS B 346 108.49 -163.29 REMARK 500 THR B 364 78.99 -113.09 REMARK 500 GLU B 365 124.60 -13.29 REMARK 500 ALA B 371 -165.98 40.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VHV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE D270A MUTANT OF L-ALANINE DEHYDROGENASE REMARK 900 FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH NADH. REMARK 900 RELATED ID: 2VHW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HOLO L-ALANINE DEHYDROGENASE FROM REMARK 900 MYCOBACTERIUM TUBERCULOSIS IN THE OPEN AND CLOSED CONFORMATION REMARK 900 RELATED ID: 2VHX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TERNARY COMPLEX OF L-ALANINE DEHYDROGENASE REMARK 900 FROM MYCOBACTERIUM TUBERCULOSIS WITH NAD+ AND PYRUVATE REMARK 900 RELATED ID: 2VHZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HOLO L-ALANINE DEHYDROGENASE FROM REMARK 900 MYCOBACTERIUM TUBERCULOSIS IN THE CLOSED CONFORMATION REMARK 999 REMARK 999 SEQUENCE REMARK 999 EXPRESSED WITH A C-TERMINAL 6XHIS TAG. DBREF 2VHY A 1 371 UNP P30234 DHA_MYCTU 1 371 DBREF 2VHY A 372 377 PDB 2VHY 2VHY 372 377 DBREF 2VHY B 1 371 UNP P30234 DHA_MYCTU 1 371 DBREF 2VHY B 372 377 PDB 2VHY 2VHY 372 377 SEQRES 1 A 377 MET ARG VAL GLY ILE PRO THR GLU THR LYS ASN ASN GLU SEQRES 2 A 377 PHE ARG VAL ALA ILE THR PRO ALA GLY VAL ALA GLU LEU SEQRES 3 A 377 THR ARG ARG GLY HIS GLU VAL LEU ILE GLN ALA GLY ALA SEQRES 4 A 377 GLY GLU GLY SER ALA ILE THR ASP ALA ASP PHE LYS ALA SEQRES 5 A 377 ALA GLY ALA GLN LEU VAL GLY THR ALA ASP GLN VAL TRP SEQRES 6 A 377 ALA ASP ALA ASP LEU LEU LEU LYS VAL LYS GLU PRO ILE SEQRES 7 A 377 ALA ALA GLU TYR GLY ARG LEU ARG HIS GLY GLN ILE LEU SEQRES 8 A 377 PHE THR PHE LEU HIS LEU ALA ALA SER ARG ALA CYS THR SEQRES 9 A 377 ASP ALA LEU LEU ASP SER GLY THR THR SER ILE ALA TYR SEQRES 10 A 377 GLU THR VAL GLN THR ALA ASP GLY ALA LEU PRO LEU LEU SEQRES 11 A 377 ALA PRO MET SER GLU VAL ALA GLY ARG LEU ALA ALA GLN SEQRES 12 A 377 VAL GLY ALA TYR HIS LEU MET ARG THR GLN GLY GLY ARG SEQRES 13 A 377 GLY VAL LEU MET GLY GLY VAL PRO GLY VAL GLU PRO ALA SEQRES 14 A 377 ASP VAL VAL VAL ILE GLY ALA GLY THR ALA GLY TYR ASN SEQRES 15 A 377 ALA ALA ARG ILE ALA ASN GLY MET GLY ALA THR VAL THR SEQRES 16 A 377 VAL LEU ASP ILE ASN ILE ASP LYS LEU ARG GLN LEU ASP SEQRES 17 A 377 ALA GLU PHE CYS GLY ARG ILE HIS THR ARG TYR SER SER SEQRES 18 A 377 ALA TYR GLU LEU GLU GLY ALA VAL LYS ARG ALA ASP LEU SEQRES 19 A 377 VAL ILE GLY ALA VAL LEU VAL PRO GLY ALA LYS ALA PRO SEQRES 20 A 377 LYS LEU VAL SER ASN SER LEU VAL ALA HIS MET LYS PRO SEQRES 21 A 377 GLY ALA VAL LEU VAL ASP ILE ALA ILE ASP GLN GLY GLY SEQRES 22 A 377 CYS PHE GLU GLY SER ARG PRO THR THR TYR ASP HIS PRO SEQRES 23 A 377 THR PHE ALA VAL HIS ASP THR LEU PHE TYR CYS VAL ALA SEQRES 24 A 377 ASN MET PRO ALA SER VAL PRO LYS THR SER THR TYR ALA SEQRES 25 A 377 LEU THR ASN ALA THR MET PRO TYR VAL LEU GLU LEU ALA SEQRES 26 A 377 ASP HIS GLY TRP ARG ALA ALA CYS ARG SER ASN PRO ALA SEQRES 27 A 377 LEU ALA LYS GLY LEU SER THR HIS GLU GLY ALA LEU LEU SEQRES 28 A 377 SER GLU ARG VAL ALA THR ASP LEU GLY VAL PRO PHE THR SEQRES 29 A 377 GLU PRO ALA SER VAL LEU ALA HIS HIS HIS HIS HIS HIS SEQRES 1 B 377 MET ARG VAL GLY ILE PRO THR GLU THR LYS ASN ASN GLU SEQRES 2 B 377 PHE ARG VAL ALA ILE THR PRO ALA GLY VAL ALA GLU LEU SEQRES 3 B 377 THR ARG ARG GLY HIS GLU VAL LEU ILE GLN ALA GLY ALA SEQRES 4 B 377 GLY GLU GLY SER ALA ILE THR ASP ALA ASP PHE LYS ALA SEQRES 5 B 377 ALA GLY ALA GLN LEU VAL GLY THR ALA ASP GLN VAL TRP SEQRES 6 B 377 ALA ASP ALA ASP LEU LEU LEU LYS VAL LYS GLU PRO ILE SEQRES 7 B 377 ALA ALA GLU TYR GLY ARG LEU ARG HIS GLY GLN ILE LEU SEQRES 8 B 377 PHE THR PHE LEU HIS LEU ALA ALA SER ARG ALA CYS THR SEQRES 9 B 377 ASP ALA LEU LEU ASP SER GLY THR THR SER ILE ALA TYR SEQRES 10 B 377 GLU THR VAL GLN THR ALA ASP GLY ALA LEU PRO LEU LEU SEQRES 11 B 377 ALA PRO MET SER GLU VAL ALA GLY ARG LEU ALA ALA GLN SEQRES 12 B 377 VAL GLY ALA TYR HIS LEU MET ARG THR GLN GLY GLY ARG SEQRES 13 B 377 GLY VAL LEU MET GLY GLY VAL PRO GLY VAL GLU PRO ALA SEQRES 14 B 377 ASP VAL VAL VAL ILE GLY ALA GLY THR ALA GLY TYR ASN SEQRES 15 B 377 ALA ALA ARG ILE ALA ASN GLY MET GLY ALA THR VAL THR SEQRES 16 B 377 VAL LEU ASP ILE ASN ILE ASP LYS LEU ARG GLN LEU ASP SEQRES 17 B 377 ALA GLU PHE CYS GLY ARG ILE HIS THR ARG TYR SER SER SEQRES 18 B 377 ALA TYR GLU LEU GLU GLY ALA VAL LYS ARG ALA ASP LEU SEQRES 19 B 377 VAL ILE GLY ALA VAL LEU VAL PRO GLY ALA LYS ALA PRO SEQRES 20 B 377 LYS LEU VAL SER ASN SER LEU VAL ALA HIS MET LYS PRO SEQRES 21 B 377 GLY ALA VAL LEU VAL ASP ILE ALA ILE ASP GLN GLY GLY SEQRES 22 B 377 CYS PHE GLU GLY SER ARG PRO THR THR TYR ASP HIS PRO SEQRES 23 B 377 THR PHE ALA VAL HIS ASP THR LEU PHE TYR CYS VAL ALA SEQRES 24 B 377 ASN MET PRO ALA SER VAL PRO LYS THR SER THR TYR ALA SEQRES 25 B 377 LEU THR ASN ALA THR MET PRO TYR VAL LEU GLU LEU ALA SEQRES 26 B 377 ASP HIS GLY TRP ARG ALA ALA CYS ARG SER ASN PRO ALA SEQRES 27 B 377 LEU ALA LYS GLY LEU SER THR HIS GLU GLY ALA LEU LEU SEQRES 28 B 377 SER GLU ARG VAL ALA THR ASP LEU GLY VAL PRO PHE THR SEQRES 29 B 377 GLU PRO ALA SER VAL LEU ALA HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *48(H2 O) HELIX 1 1 ALA A 21 LEU A 26 1 6 HELIX 2 2 THR A 27 GLY A 30 5 4 HELIX 3 3 THR A 46 ALA A 52 1 7 HELIX 4 4 THR A 60 ALA A 68 1 9 HELIX 5 5 ILE A 78 TYR A 82 5 5 HELIX 6 6 HIS A 96 ALA A 99 5 4 HELIX 7 7 SER A 100 ASP A 109 1 10 HELIX 8 8 LEU A 130 HIS A 148 1 19 HELIX 9 9 MET A 150 GLY A 154 5 5 HELIX 10 10 GLY A 177 MET A 190 1 14 HELIX 11 11 ASN A 200 PHE A 211 1 12 HELIX 12 12 SER A 221 ALA A 232 1 12 HELIX 13 13 MET A 301 SER A 304 5 4 HELIX 14 14 VAL A 305 SER A 335 1 31 HELIX 15 15 ASN A 336 LYS A 341 1 6 HELIX 16 16 VAL A 355 GLY A 360 1 6 HELIX 17 17 THR B 19 ARG B 28 1 10 HELIX 18 18 GLY B 40 ALA B 44 5 5 HELIX 19 19 ASP B 47 ALA B 52 1 6 HELIX 20 20 THR B 60 ALA B 66 1 7 HELIX 21 21 ILE B 78 LEU B 85 5 8 HELIX 22 22 HIS B 96 ALA B 99 5 4 HELIX 23 23 SER B 100 ASP B 109 1 10 HELIX 24 24 GLU B 118 VAL B 120 5 3 HELIX 25 25 LEU B 130 HIS B 148 1 19 HELIX 26 26 MET B 150 GLY B 154 5 5 HELIX 27 27 GLY B 177 MET B 190 1 14 HELIX 28 28 ASN B 200 PHE B 211 1 12 HELIX 29 29 SER B 221 ALA B 232 1 12 HELIX 30 30 MET B 301 SER B 304 5 4 HELIX 31 31 VAL B 305 SER B 335 1 31 HELIX 32 32 ASN B 336 LYS B 341 1 6 HELIX 33 33 SER B 352 LEU B 359 1 8 HELIX 34 34 GLU B 365 ALA B 371 5 7 SHEET 1 AA 8 ALA A 55 VAL A 58 0 SHEET 2 AA 8 GLU A 32 GLN A 36 1 O VAL A 33 N GLN A 56 SHEET 3 AA 8 ARG A 2 ILE A 5 1 O VAL A 3 N LEU A 34 SHEET 4 AA 8 LEU A 70 LEU A 72 1 O LEU A 70 N GLY A 4 SHEET 5 AA 8 ILE A 90 THR A 93 1 O ILE A 90 N LEU A 71 SHEET 6 AA 8 THR A 113 ALA A 116 1 O THR A 113 N LEU A 91 SHEET 7 AA 8 LEU A 343 HIS A 346 -1 N SER A 344 O SER A 114 SHEET 8 AA 8 ALA A 349 LEU A 350 -1 O ALA A 349 N HIS A 346 SHEET 1 AB 5 HIS A 216 TYR A 219 0 SHEET 2 AB 5 THR A 193 ASP A 198 1 O VAL A 194 N HIS A 216 SHEET 3 AB 5 ASP A 170 ILE A 174 1 O VAL A 171 N THR A 195 SHEET 4 AB 5 LEU A 234 GLY A 237 1 O LEU A 234 N VAL A 172 SHEET 5 AB 5 VAL A 263 ASP A 266 1 O VAL A 263 N VAL A 235 SHEET 1 BA 7 GLU B 32 ILE B 35 0 SHEET 2 BA 7 ARG B 2 ILE B 5 1 O VAL B 3 N LEU B 34 SHEET 3 BA 7 LEU B 70 LEU B 72 1 O LEU B 70 N GLY B 4 SHEET 4 BA 7 ILE B 90 THR B 93 1 O ILE B 90 N LEU B 71 SHEET 5 BA 7 THR B 113 ALA B 116 1 O THR B 113 N LEU B 91 SHEET 6 BA 7 LEU B 343 HIS B 346 -1 N SER B 344 O SER B 114 SHEET 7 BA 7 ALA B 349 LEU B 350 -1 O ALA B 349 N HIS B 346 SHEET 1 BB 6 HIS B 216 TYR B 219 0 SHEET 2 BB 6 THR B 193 ASP B 198 1 O VAL B 194 N HIS B 216 SHEET 3 BB 6 ASP B 170 ILE B 174 1 O VAL B 171 N THR B 195 SHEET 4 BB 6 LEU B 234 GLY B 237 1 O LEU B 234 N VAL B 172 SHEET 5 BB 6 VAL B 263 ASP B 266 1 O VAL B 263 N VAL B 235 SHEET 6 BB 6 PHE B 295 TYR B 296 1 O TYR B 296 N ASP B 266 CRYST1 147.110 147.110 93.660 90.00 90.00 120.00 P 3 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006798 0.003925 0.000000 0.00000 SCALE2 0.000000 0.007849 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010677 0.00000 MTRIX1 1 -0.977540 0.210050 0.016970 -153.96642 1 MTRIX2 1 0.210140 0.977660 0.003630 16.47914 1 MTRIX3 1 -0.015830 0.007120 -0.999850 -33.72772 1