HEADER HYDROLASE 30-NOV-07 2VID TITLE SERINE PROTEASE SPLB FROM STAPHYLOCOCCUS AUREUS AT 1.8A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE PROTEASE SPLB; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 37-240; COMPND 5 SYNONYM: SPLB SERINE PROTEASE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 STRAIN: 8325-4; SOURCE 5 EXPRESSION_SYSTEM: BACILLUS SUBTILIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1423; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: WB800; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PWB980 KEYWDS PROTEASE, SERINE PROTEASE, STAPHYLOCOCCUS AUREUS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.DUBIN,J.STEC-NIEMCZYK,M.KISIELEWSKA,K.PUSTELNY,G.M.POPOWICZ, AUTHOR 2 M.BISTA,T.KANTYKA,K.T.BOULWARE,H.R.STENNICKE,A.CZARNA,M.PHOPAISARN, AUTHOR 3 P.S.DAUGHERTY,I.B.THOGERSEN,J.J.ENGHILD,N.THORNBERRY,A.DUBIN, AUTHOR 4 J.POTEMPA REVDAT 7 13-DEC-23 2VID 1 REMARK REVDAT 6 15-MAY-19 2VID 1 REMARK REVDAT 5 08-MAY-19 2VID 1 REMARK REVDAT 4 26-MAY-09 2VID 1 REMARK REVDAT 3 24-FEB-09 2VID 1 VERSN REVDAT 2 27-MAY-08 2VID 1 JRNL REVDAT 1 13-MAY-08 2VID 0 JRNL AUTH G.DUBIN,J.STEC-NIEMCZYK,M.KISIELEWSKA,K.PUSTELNY, JRNL AUTH 2 G.M.POPOWICZ,M.BISTA,T.KANTYKA,K.T.BOULWARE,H.R.STENNICKE, JRNL AUTH 3 A.CZARNA,M.PHOPAISARN,P.S.DAUGHERTY,I.B.THOGERSEN, JRNL AUTH 4 J.J.ENGHILD,N.THORNBERRY,A.DUBIN,J.POTEMPA JRNL TITL ENZYMATIC ACTIVITY OF THE STAPHYLOCOCCUS AUREUS SPLB SERINE JRNL TITL 2 PROTEASE IS INDUCED BY SUBSTRATES CONTAINING THE SEQUENCE JRNL TITL 3 TRP-GLU-LEU-GLN. JRNL REF J.MOL.BIOL. V. 379 343 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18448121 JRNL DOI 10.1016/J.JMB.2008.03.059 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.M.POPOWICZ,G.DUBIN,J.STEC-NIEMCZYK,A.CZARNY,A.DUBIN, REMARK 1 AUTH 2 J.POTEMPA,T.A.HOLAK REMARK 1 TITL FUNCTIONAL AND STRUCTURAL CHARACTERIZATION OF SPL PROTEASES REMARK 1 TITL 2 FROM STAPHYLOCOCCUS AUREUS REMARK 1 REF J.MOL.BIOL. V. 358 270 2006 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 16516230 REMARK 1 DOI 10.1016/J.JMB.2006.01.098 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 45454 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2403 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3277 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 197 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3032 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 322 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.91000 REMARK 3 B22 (A**2) : 0.91000 REMARK 3 B33 (A**2) : -1.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.126 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.834 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3098 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4202 ; 1.516 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 394 ; 6.629 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;33.000 ;24.741 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 484 ;13.203 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;22.105 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 464 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2380 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1428 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2123 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 337 ; 0.122 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.194 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.091 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2013 ; 1.093 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3188 ; 1.804 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1217 ; 2.614 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1014 ; 3.736 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. DISORDERED REGIONS WERE EXCLUDED FROM THE MODEL. REMARK 3 AUTHOR SUGGESTS TO RETAIN THE ORIGINAL WATERS AND NOT TO MOVE REMARK 3 THEM TO SYMMETRY RELATED POSITIONS. REMARK 4 REMARK 4 2VID COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1290034609. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48001 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 14.40 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2AS9 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SITTING DROP VAPOR DIFFUSION; 20C; REMARK 280 GROWN BY MIXING EQUAL VOLUMES OF SPLB (35 MG/ML IN 5MM TRIS-HCL, REMARK 280 PH 8.0 CONTAINING 50MM NACL) AND 0.1M TRIS-HCL, PH 8.5-9.0 REMARK 280 CONTAINING 30% PEG 3350 (OPTIMIZED HAMPTON RESEARCH INDEX REMARK 280 SOLUTION NUMBER 45), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.64650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 58.73750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 58.73750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 18.32325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 58.73750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 58.73750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 54.96975 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 58.73750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.73750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 18.32325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 58.73750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.73750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 54.96975 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 36.64650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 126 REMARK 465 ASN A 127 REMARK 465 LYS A 178 REMARK 465 ASN A 179 REMARK 465 ASP A 180 REMARK 465 ASN B 179 REMARK 465 ASP B 180 REMARK 465 ASP B 181 REMARK 465 ASN B 182 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 6 CE NZ REMARK 470 LYS A 8 CG CD CE NZ REMARK 470 ASN A 11 CG OD1 ND2 REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 ASN A 55 CG OD1 ND2 REMARK 470 ASP A 57 CG OD1 OD2 REMARK 470 LYS A 58 CG CD CE NZ REMARK 470 LYS A 105 CE NZ REMARK 470 LYS A 111 CD CE NZ REMARK 470 TYR A 125 CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 128 CG CD CE NZ REMARK 470 GLU A 142 CD OE1 OE2 REMARK 470 ASP A 181 CB CG OD1 OD2 REMARK 470 LYS B 6 CE NZ REMARK 470 LYS B 8 CE NZ REMARK 470 LYS B 22 CE NZ REMARK 470 LYS B 58 CG CD CE NZ REMARK 470 LYS B 111 CD CE NZ REMARK 470 LYS B 178 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2064 O HOH B 2018 4554 0.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 86 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 23 42.50 -145.08 REMARK 500 HIS A 53 58.50 30.49 REMARK 500 ASP A 57 -66.83 -93.00 REMARK 500 LYS A 58 -14.20 -167.12 REMARK 500 TYR A 121 74.30 -119.39 REMARK 500 SER B 23 30.71 -142.77 REMARK 500 HIS B 53 52.87 37.14 REMARK 500 SER B 56 -125.99 45.72 REMARK 500 TYR B 125 -65.15 -132.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "AA" IN REMARK 700 EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 8-STRANDED REMARK 700 BARREL THIS IS REPRESENTED BY A 9-STRANDED SHEET IN WHICH THE REMARK 700 FIRST AND LAST STRANDS ARE IDENTICAL. THE SHEETS PRESENTED AS " REMARK 700 AB" AND "BA" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN REMARK 700 7-STRANDED BARREL THIS IS REPRESENTED BY A 8-STRANDED SHEET IN REMARK 700 WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. THE SHEETS REMARK 700 PRESENTED AS "BB" IN EACH CHAIN ON SHEET RECORDS BELOW IS REMARK 700 ACTUALLY AN 5-STRANDED BARREL THIS IS REPRESENTED BY A 6- REMARK 700 STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. DBREF 2VID A 1 204 UNP Q9KH50 Q9KH50_STAAU 37 240 DBREF 2VID B 1 204 UNP Q9KH50 Q9KH50_STAAU 37 240 SEQRES 1 A 204 GLU ASN ASN VAL THR LYS VAL LYS ASP THR ASN ILE PHE SEQRES 2 A 204 PRO TYR THR GLY VAL VAL ALA PHE LYS SER ALA THR GLY SEQRES 3 A 204 PHE VAL VAL GLY LYS ASN THR ILE LEU THR ASN LYS HIS SEQRES 4 A 204 VAL SER LYS ASN TYR LYS VAL GLY ASP ARG ILE THR ALA SEQRES 5 A 204 HIS PRO ASN SER ASP LYS GLY ASN GLY GLY ILE TYR SER SEQRES 6 A 204 ILE LYS LYS ILE ILE ASN TYR PRO GLY LYS GLU ASP VAL SEQRES 7 A 204 SER VAL ILE GLN VAL GLU GLU ARG ALA ILE GLU ARG GLY SEQRES 8 A 204 PRO LYS GLY PHE ASN PHE ASN ASP ASN VAL THR PRO PHE SEQRES 9 A 204 LYS TYR ALA ALA GLY ALA LYS ALA GLY GLU ARG ILE LYS SEQRES 10 A 204 VAL ILE GLY TYR PRO HIS PRO TYR LYS ASN LYS TYR VAL SEQRES 11 A 204 LEU TYR GLU SER THR GLY PRO VAL MET SER VAL GLU GLY SEQRES 12 A 204 SER SER ILE VAL TYR SER ALA HIS THR GLU SER GLY ASN SEQRES 13 A 204 SER GLY SER PRO VAL LEU ASN SER ASN ASN GLU LEU VAL SEQRES 14 A 204 GLY ILE HIS PHE ALA SER ASP VAL LYS ASN ASP ASP ASN SEQRES 15 A 204 ARG ASN ALA TYR GLY VAL TYR PHE THR PRO GLU ILE LYS SEQRES 16 A 204 LYS PHE ILE ALA GLU ASN ILE ASP LYS SEQRES 1 B 204 GLU ASN ASN VAL THR LYS VAL LYS ASP THR ASN ILE PHE SEQRES 2 B 204 PRO TYR THR GLY VAL VAL ALA PHE LYS SER ALA THR GLY SEQRES 3 B 204 PHE VAL VAL GLY LYS ASN THR ILE LEU THR ASN LYS HIS SEQRES 4 B 204 VAL SER LYS ASN TYR LYS VAL GLY ASP ARG ILE THR ALA SEQRES 5 B 204 HIS PRO ASN SER ASP LYS GLY ASN GLY GLY ILE TYR SER SEQRES 6 B 204 ILE LYS LYS ILE ILE ASN TYR PRO GLY LYS GLU ASP VAL SEQRES 7 B 204 SER VAL ILE GLN VAL GLU GLU ARG ALA ILE GLU ARG GLY SEQRES 8 B 204 PRO LYS GLY PHE ASN PHE ASN ASP ASN VAL THR PRO PHE SEQRES 9 B 204 LYS TYR ALA ALA GLY ALA LYS ALA GLY GLU ARG ILE LYS SEQRES 10 B 204 VAL ILE GLY TYR PRO HIS PRO TYR LYS ASN LYS TYR VAL SEQRES 11 B 204 LEU TYR GLU SER THR GLY PRO VAL MET SER VAL GLU GLY SEQRES 12 B 204 SER SER ILE VAL TYR SER ALA HIS THR GLU SER GLY ASN SEQRES 13 B 204 SER GLY SER PRO VAL LEU ASN SER ASN ASN GLU LEU VAL SEQRES 14 B 204 GLY ILE HIS PHE ALA SER ASP VAL LYS ASN ASP ASP ASN SEQRES 15 B 204 ARG ASN ALA TYR GLY VAL TYR PHE THR PRO GLU ILE LYS SEQRES 16 B 204 LYS PHE ILE ALA GLU ASN ILE ASP LYS FORMUL 3 HOH *322(H2 O) HELIX 1 1 PRO A 14 THR A 16 5 3 HELIX 2 2 ASN A 37 LYS A 42 1 6 HELIX 3 3 PHE A 97 VAL A 101 1 5 HELIX 4 4 GLU A 153 SER A 157 5 5 HELIX 5 5 THR A 191 ILE A 202 1 12 HELIX 6 6 PRO B 14 THR B 16 5 3 HELIX 7 7 ASN B 37 LYS B 42 1 6 HELIX 8 8 ASN B 98 ASN B 100 5 3 HELIX 9 9 GLU B 153 SER B 157 5 5 HELIX 10 10 THR B 191 ASN B 201 1 11 SHEET 1 AA 9 ASN A 3 LYS A 6 0 SHEET 2 AA 9 TYR A 132 GLU A 142 -1 O GLU A 133 N THR A 5 SHEET 3 AA 9 SER A 145 TYR A 148 -1 O SER A 145 N GLU A 142 SHEET 4 AA 9 ALA A 185 VAL A 188 -1 O ALA A 185 N TYR A 148 SHEET 5 AA 9 LEU A 168 SER A 175 -1 O ILE A 171 N VAL A 188 SHEET 6 AA 9 PRO A 160 LEU A 162 -1 O VAL A 161 N VAL A 169 SHEET 7 AA 9 ARG A 115 GLY A 120 -1 O LYS A 117 N LEU A 162 SHEET 8 AA 9 TYR A 132 GLU A 142 1 O TYR A 132 N GLY A 120 SHEET 9 AA 9 ASN A 3 LYS A 6 -1 O ASN A 3 N THR A 135 SHEET 1 AB 8 VAL A 18 ALA A 20 0 SHEET 2 AB 8 THR A 25 GLY A 30 -1 O GLY A 26 N VAL A 19 SHEET 3 AB 8 THR A 33 THR A 36 -1 O THR A 33 N VAL A 29 SHEET 4 AB 8 SER A 79 VAL A 83 -1 O SER A 79 N THR A 36 SHEET 5 AB 8 ILE A 63 ASN A 71 -1 N LYS A 67 O GLN A 82 SHEET 6 AB 8 ARG A 49 ALA A 52 -1 O ILE A 50 N TYR A 64 SHEET 7 AB 8 VAL A 18 ALA A 20 -1 O ALA A 20 N THR A 51 SHEET 8 AB 8 VAL A 18 ALA A 20 0 SHEET 1 AC 2 ARG A 86 GLY A 91 0 SHEET 2 AC 2 GLY A 94 ASN A 96 -1 O GLY A 94 N GLY A 91 SHEET 1 BA 8 ASN B 3 LYS B 6 0 SHEET 2 BA 8 TYR B 132 GLU B 142 -1 O GLU B 133 N THR B 5 SHEET 3 BA 8 SER B 145 TYR B 148 -1 O SER B 145 N GLU B 142 SHEET 4 BA 8 ALA B 185 VAL B 188 -1 O ALA B 185 N TYR B 148 SHEET 5 BA 8 LEU B 168 SER B 175 -1 O ILE B 171 N VAL B 188 SHEET 6 BA 8 PRO B 160 LEU B 162 -1 O VAL B 161 N VAL B 169 SHEET 7 BA 8 ARG B 115 GLY B 120 -1 O LYS B 117 N LEU B 162 SHEET 8 BA 8 ASN B 3 LYS B 6 0 SHEET 1 BB15 VAL B 18 ALA B 20 0 SHEET 2 BB15 THR B 25 GLY B 30 -1 O GLY B 26 N VAL B 19 SHEET 3 BB15 THR B 33 THR B 36 -1 O THR B 33 N VAL B 29 SHEET 4 BB15 SER B 79 VAL B 83 -1 O SER B 79 N THR B 36 SHEET 5 BB15 ILE B 63 ASN B 71 -1 N LYS B 67 O GLN B 82 SHEET 6 BB15 THR B 25 GLY B 30 0 SHEET 7 BB15 VAL B 18 ALA B 20 -1 O VAL B 19 N GLY B 26 SHEET 8 BB15 THR B 33 THR B 36 0 SHEET 9 BB15 THR B 25 GLY B 30 -1 O PHE B 27 N LEU B 35 SHEET 10 BB15 ARG B 49 ALA B 52 0 SHEET 11 BB15 VAL B 18 ALA B 20 -1 O ALA B 20 N THR B 51 SHEET 12 BB15 ILE B 63 ASN B 71 0 SHEET 13 BB15 ARG B 49 ALA B 52 -1 O ILE B 50 N TYR B 64 SHEET 14 BB15 SER B 79 VAL B 83 0 SHEET 15 BB15 THR B 33 THR B 36 -1 O ILE B 34 N ILE B 81 SHEET 1 BC 2 ARG B 86 GLY B 91 0 SHEET 2 BC 2 GLY B 94 ASN B 96 -1 O GLY B 94 N GLY B 91 CISPEP 1 PHE A 13 PRO A 14 0 5.11 CISPEP 2 PHE B 13 PRO B 14 0 6.59 CRYST1 117.475 117.475 73.293 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008512 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008512 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013644 0.00000